BAC Information

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BAC

Clone NameB6Ng01-281A06
Chromosome15 (Build37)
Map Location 86,548,953 - 86,679,740
singlet/doubletdoublet
Overlap genenone
Upstream genePpara, 2210021J22Rik, Pkdrej, AW124722, Gtse1, Trmu, Celsr1, BC021523, Cerk, LOC100042300, Tbc1d22a
Downstream geneLOC100042309, AW049604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281A06.bB6Ng01-281A06.g
ACCGA080603GA080604
length3691,151
definitionB6Ng01-281A06.b B6Ng01-281A06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,679,372 - 86,679,740)(86,548,953 - 86,550,076)
sequence
tcaatgctgaggacccagctagtgaaatcacagtgatggaagacagagta
tgaacaagagaaaaactacagtgggcagaggaacaggggaagtctggaca
gcagccacagagaagaggcacaggagaggaggaggctttgcatggtagag
cccagagaaatgggtggagaaaaaatagcatccccatcaccacatgggtg
cctttgcaacccttgtagatacacctgaaggaagacaagaccaagagaaa
atagaagtgggggaaatatcaggaaatagccctgtgcagactaagcaaat
attccaagaccctttgatagccaacaacaggcactgagaagagaaaaatc
tctgggggtgggggtgggg
gaattcaccccccttggagaggctaaagaggcctggtggtttccatggca
accaacaacagccgtcgtgggtcttaaatgccaggatgagtagaaacagg
ggcacaccaggccatcaccagcctgcctgccgtctgcctcaggtgggagc
aattgctttttcttcatggcctccctgttccacttccctgttcatcagtc
aaaacaaggtaattccagccagaccactgcctctcacgcaggcggggtgc
actcccctcaggcttgctggtttgattaccatgtttgttcagactcagaa
tggagggagaattttcacatggcagaaggcccttgccttcctgtaggcca
ggaaggtggagagaactgaagccagagaaagccctttcaccgctgcctcc
tgctgtctccttcctccagtgggccctccctccctgggatcccacccttc
ctgtgacctctcctccatccttccctctgacccctctcccctgtcaccgc
atttctccctgtgacccctcctccatctctccttctgaccctccctctga
ttcacctctccctgggaccccatctcttctcgggaccctctctctccgtg
tatgccctcacttctggtgacccctccttccctgtgacccctcctccatc
cttccctgtgactccgccctcctcacctttttgcccagccccatccgtct
ccctgcattggctcattgataggattcaccctgctctgcttctctaggca
cggcccacaatgcatacagacatcaaagcatcccatcgtactccgcgggt
atactgagcatgcgctgctcttcttattcgaacccttacactgtttcggt
gctttgtacttcctgttttgagtgtggtccacttccctgtcccaatggag
tttctctttcctgtcacgggagattcttgttgtcccaacaggtatttgag
ttactagggattgtccaaccttgtcttttcctttgctctcttcctcatac
catctgccttgttcacccacttcccagcggactttcttgttgttcacgtg
cttccgcttcagcttcccgccttggtcttgttccttcaatacaacataga
tttattccccttaggttcagtctggacgcgcgttttttgccaggagttct
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_86679372_86679740
seq2: B6Ng01-281A06.b_52_420 (reverse)

seq1  CCCCACCCCCACCCCCAGAGATTTTTCTCTTCTCAGTGCCTGTTGTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCCCACCCCCAGAGATTTTTCTCTTCTCAGTGCCTGTTGTTGGC  50

seq1  TATCAAAGGGTCTTGGAATATTTGCTTAGTCTGCACAGGGCTATTTCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAAGGGTCTTGGAATATTTGCTTAGTCTGCACAGGGCTATTTCCTG  100

seq1  ATATTTCCCCCACTTCTATTTTCTCTTGGTCTTGTCTTCCTTCAGGTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCCCCCACTTCTATTTTCTCTTGGTCTTGTCTTCCTTCAGGTGTA  150

seq1  TCTACAAGGGTTGCAAAGGCACCCATGTGGTGATGGGGATGCTATTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGGGTTGCAAAGGCACCCATGTGGTGATGGGGATGCTATTTTTT  200

seq1  CTCCACCCATTTCTCTGGGCTCTACCATGCAAAGCCTCCTCCTCTCCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCCATTTCTCTGGGCTCTACCATGCAAAGCCTCCTCCTCTCCTGT  250

seq1  GCCTCTTCTCTGTGGCTGCTGTCCAGACTTCCCCTGTTCCTCTGCCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCTCTGTGGCTGCTGTCCAGACTTCCCCTGTTCCTCTGCCCACT  300

seq1  GTAGTTTTTCTCTTGTTCATACTCTGTCTTCCATCACTGTGATTTCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTTTCTCTTGTTCATACTCTGTCTTCCATCACTGTGATTTCACTA  350

seq1  GCTGGGTCCTCAGCATTGA  369
      |||||||||||||||||||
seq2  GCTGGGTCCTCAGCATTGA  369

seq1: chr15_86548953_86550076
seq2: B6Ng01-281A06.g_67_1217

seq1  GAATTCACCCCCCTTGGAGAGGCTAAAGAGGCCTGGTGGTTTCCATGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCCCCTTGGAGAGGCTAAAGAGGCCTGGTGGTTTCCATGGCA  50

seq1  ACCAACAACAGCCGTCGTGGGTCTTAAATGCCAGGATGAGTAGAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAACAGCCGTCGTGGGTCTTAAATGCCAGGATGAGTAGAAACAGG  100

seq1  GGCACACCAGGCCATCACCAGCCTGCCTGCCGTCTGCCTCAGGTGGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACCAGGCCATCACCAGCCTGCCTGCCGTCTGCCTCAGGTGGGAGC  150

seq1  AATTGCTTTTTCTTCATGGCCTCCCTGTTCCACTTCCCTGTTCATCAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTTTCTTCATGGCCTCCCTGTTCCACTTCCCTGTTCATCAGTC  200

seq1  AAAACAAGGTAATTCCAGCCAGACCACTGCCTCTCACGCAGGCGGGGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGGTAATTCCAGCCAGACCACTGCCTCTCACGCAGGCGGGGTGC  250

seq1  ACTCCCCTCAGGCTTGCTGGTTTGATTACCATGTTTGTTCAGACTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCTCAGGCTTGCTGGTTTGATTACCATGTTTGTTCAGACTCAGAA  300

seq1  TGGAGGGAGAATTTTCACATGGCAGAAGGCCCTTGCCTTCCTGTAGGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGAGAATTTTCACATGGCAGAAGGCCCTTGCCTTCCTGTAGGCCA  350

seq1  GGAAGGTGGAGAGAACTGAAGCCAGAGAAAGCCCTTTCACCGCTGCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTGGAGAGAACTGAAGCCAGAGAAAGCCCTTTCACCGCTGCCTCC  400

seq1  TGCTGTCTCCTTCCTCCAGTGGGCCCTCCCTCCCTGGGATCCCACCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCTCCTTCCTCCAGTGGGCCCTCCCTCCCTGGGATCCCACCCTTC  450

seq1  CTGTGACCTCTCCTCCATCCTTCCCTCTGACCCCTCTCCCCTGTCACCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACCTCTCCTCCATCCTTCCCTCTGACCCCTCTCCCCTGTCACCGC  500

seq1  ATTTCTCCCTGTGACCCCTCCTCCATCTCTCCTTCTGACCCTCCCTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCCCTGTGACCCCTCCTCCATCTCTCCTTCTGACCCTCCCTCTGA  550

seq1  TTCACCTCTCCCTGGGACCCCATCTCTTCTCGGGACCCTCTCTCTCCGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCTCCCTGGGACCCCATCTCTTCTCGGGACCCTCTCTCTCCGTG  600

seq1  TATGCCCTCACTTCTGGTGACCCCTCCTTCCCTGTGACCCCTCCTCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCCTCACTTCTGGTGACCCCTCCTTCCCTGTGACCCCTCCTCCATC  650

seq1  CTTCCCTGTGACTCCGCCCTCCTCACCTTTTTGCCCAGCCCCATCCGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGTGACTCCGCCCTCCTCACCTTTTTGCCCAGCCCCATCCGTCT  700

seq1  CCCTGCATTGGCTCATTGATAGGATTCACCCTGCTCTGCTTCTCTAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCATTGGCTCATTGATAGGATTCACCCTGCTCTGCTTCTCTAGGCA  750

seq1  CGGCCCACAATGCATACAGACATCAAAGCATCCCATCGTACTCCGCGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCACAATGCATACAGACATCAAAGCATCCCATCGTACTCCGCGGGT  800

seq1  ATACTGAGCATGCGCTGCTCTTCTTATTCGAACCCTTACACTG-TTCGGT  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATACTGAGCATGCGCTGCTCTTCTTATTCGAACCCTTACACTGTTTCGGT  850

seq1  GCTTTGTACTTCCTGTTTTGAGTGTGGTCCACTT-CCTGTCCCAATGGAG  898
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GCTTTGTACTTCCTGTTTTGAGTGTGGTCCACTTCCCTGTCCCAATGGAG  900

seq1  TTTCTC-TTCCTGTCAC-GGAGATTCTTG-TGTCCCAACAGGTATTTGAG  945
      |||||| |||||||||| ||||||||||| ||||||||||||||||||||
seq2  TTTCTCTTTCCTGTCACGGGAGATTCTTGTTGTCCCAACAGGTATTTGAG  950

seq1  -TACTAGGGA-TGTCCAAACCTGTCTTT--CCTTGCTCCTCTTCCTCATA  991
       ||||||||| ||||||| | |||||||  | ||||| ||||||||||||
seq2  TTACTAGGGATTGTCCAACCTTGTCTTTTCCTTTGCT-CTCTTCCTCATA  999

seq1  CCATCTGCCT--GTCACCCACCTCCCAGCGGAC-TTCCTGT--GTCACGT  1036
      ||||||||||   |||||||| ||||||||||| ||| |||   ||||||
seq2  CCATCTGCCTTGTTCACCCACTTCCCAGCGGACTTTCTTGTTGTTCACGT  1049

seq1  GC-TCCGCTTCAGC-TCCCGC--TTGTCTTGT--CCTCAATAC-ACTAAG  1079
      || ||||||||||| ||||||  | |||||||  | ||||||| ||  ||
seq2  GCTTCCGCTTCAGCTTCCCGCCTTGGTCTTGTTCCTTCAATACAACATAG  1099

seq1  A-TTAT---CCCTAGTTCCAGTCT-GACGCG---TTTTTGCCAGAAAGTT  1121
      | ||||   || ||| | |||||| ||||||   ||||||||||  ||||
seq2  ATTTATTCCCCTTAGGTTCAGTCTGGACGCGCGTTTTTTGCCAG-GAGTT  1148

seq1  CTT  1124
      |||
seq2  CTT  1151