BAC Information

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BAC

Clone NameB6Ng01-281B12
Chromosome15 (Build37)1 (Build37)
Map Location 80,184,035 - 80,184,085172,437,137 - 172,438,253
singlet/doubletsingletsinglet
Overlap geneCacna1i
Upstream geneMaff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1
Downstream geneEnthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281B12.bB6Ng01-281B12.g
ACCGA080658GA080659
length831,121
definitionB6Ng01-281B12.b B6Ng01-281B12.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,184,035 - 80,184,085)(172,437,137 - 172,438,253)
sequence
gaattctttattttatatgtatgaatgttttgcctgtatgtatgtatgta
tgtatataaatgtgtgtatatatatatatatat
gaattctcttaaggcaaattggtctgtgcatcctttgcagaagtaggagc
taggaattaagacttctgtagagtctagacagaaggaagtaacccggagt
ggagctagcacctgcgtggtatgcaggctgcatggaggactggcaacaga
catgctcctggcatctccatttgggttgcttgcagaaagagtttggcttt
gctgcttttagtatcttttctgacttgttggtacctgtgctgggtacaaa
atatgaggccagtgatgggccataggaatgacagtacaaagacccagcta
ggacttagctatcaaccattgacaatacagagccaccttcacacactgca
ccccagcactgactgtggtcctggtggtggacgttctgagtatcactact
gattctgcttgggctgggcaccggagagctcggataacatatccactgtg
tattcacagagaggtgatttcagtgtgaagtctgacttgtttgaatttat
tggttatataatataacttgtgtttaaattataaatctatataaggcctg
tatgcataagcagtttatatctagatgtatgttttacatatttaaatgat
attataatttgccaatacttttttgggtaatgactttattgagatatacc
tcatatactatataatttatacatcatacactatacaattttagcattgg
gatttagtatatatccatatacatcattatgcaaacgtcattatagaact
tacttcctccccaaaggaaactctggatttttaaagtttttgcagcgttg
gggatcaaactcaggacctccagcatgctagtcagtgctctaccacagga
ccacatacttctagctaactttgtgcttctaccctctcatctcccaatgt
ccccgaggctcccagccacaagtatcctccaccagttcacttcccaccct
gaatggatttgcctgtctggacattagctattgacggtctcattaaatta
tgtggacttcgtgtcttggcttcttttagtgtttgcacagttaactgtgc
ttttttttattgcacaacacttcatgtccctttattattggcctaaatat
tcaatatcatactttctagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80184035_80184085
seq2: B6Ng01-281B12.b_76_124 (reverse)

seq1  ATATATATATATATATACACACATATACATACATACATATATATACATAC  50
      |||||||||||||||||||||||| || ||||||||  ||| ||||||||
seq2  ATATATATATATATATACACACATTTATATACATAC--ATACATACATAC  48

seq1  A  51
      |
seq2  A  49

seq1: chr1_172437137_172438253
seq2: B6Ng01-281B12.g_65_1185 (reverse)

seq1  TACTAG-AAGTATGATATGGAATATT--AGCCAATAATAAAAGGACATGA  47
      |||||| ||||||||||| |||||||   |||||||||||| ||||||||
seq2  TACTAGAAAGTATGATATTGAATATTTAGGCCAATAATAAAGGGACATGA  50

seq1  AGTGTTGGTGCA--TAAAAAAAGCACAGGTTAACTGTGCAAACACTAAAA  95
      |||||| |||||   |||||||||||| ||||||||||||||||||||||
seq2  AGTGTT-GTGCAATAAAAAAAAGCACA-GTTAACTGTGCAAACACTAAAA  98

seq1  GAAGCC-AGACACGAAGGTCCACAT-ATTTTATGAGACCGTCAATAGCTA  143
      |||||| ||||||||| |||||||| |||| |||||||||||||||||||
seq2  GAAGCCAAGACACGAA-GTCCACATAATTTAATGAGACCGTCAATAGCTA  147

seq1  ATGTCCAAGACAGGCAAATCCATTCA-GGTTGGAAGTGAACTGGTGGAGG  192
      |||||| ||||||||||||||||||| ||| |||||||||||||||||||
seq2  ATGTCC-AGACAGGCAAATCCATTCAGGGTGGGAAGTGAACTGGTGGAGG  196

seq1  ATACTTGTGGCTGGGAGCCTCGGGGACATTGGGAGATGAGAGGGTAGAAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTGTGGCTGGGAGCCTCGGGGACATTGGGAGATGAGAGGGTAGAAG  246

seq1  CACAAAGTTAGCTAGAAGTATGTGGTCCTGTGGTAGAGCACTGACTAGCA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTTAGCTAGAAGTATGTGGTCCTGTGGTAGAGCACTGACTAGCA  296

seq1  TGCTGGAGGTCCTGAGTTTGATCCCCAACGCTGCAAAAACTTTAAAAATC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGTCCTGAGTTTGATCCCCAACGCTGCAAAAACTTTAAAAATC  346

seq1  CAGAGTTTCCTTTGGGGAGGAAGTAAGTTCTATAATGACGTTTGCATAAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCCTTTGGGGAGGAAGTAAGTTCTATAATGACGTTTGCATAAT  396

seq1  GATGTATATGGATATATACTAAATCCCAATGCTAAAATTGTATAGTGTAT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATATGGATATATACTAAATCCCAATGCTAAAATTGTATAGTGTAT  446

seq1  GATGTATAAATTATATAGTATATGAGGTATATCTCAATAAAGTCATTACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAAATTATATAGTATATGAGGTATATCTCAATAAAGTCATTACC  496

seq1  CAAAAAAGTATTGGCAAATTATAATATCATTTAAATATGTAAAACATACA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTATTGGCAAATTATAATATCATTTAAATATGTAAAACATACA  546

seq1  TCTAGATATAAACTGCTTATGCATACAGGCCTTATATAGATTTATAATTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATATAAACTGCTTATGCATACAGGCCTTATATAGATTTATAATTT  596

seq1  AAACACAAGTTATATTATATAACCAATAAATTCAAACAAGTCAGACTTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGTTATATTATATAACCAATAAATTCAAACAAGTCAGACTTCA  646

seq1  CACTGAAATCACCTCTCTGTGAATACACAGTGGATATGTTATCCGAGCTC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAATCACCTCTCTGTGAATACACAGTGGATATGTTATCCGAGCTC  696

seq1  TCCGGTGCCCAGCCCAAGCAGAATCAGTAGTGATACTCAGAACGTCCACC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTGCCCAGCCCAAGCAGAATCAGTAGTGATACTCAGAACGTCCACC  746

seq1  ACCAGGACCACAGTCAGTGCTGGGGTGCAGTGTGTGAAGGTGGCTCTGTA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGACCACAGTCAGTGCTGGGGTGCAGTGTGTGAAGGTGGCTCTGTA  796

seq1  TTGTCAATGGTTGATAGCTAAGTCCTAGCTGGGTCTTTGTACTGTCATTC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATGGTTGATAGCTAAGTCCTAGCTGGGTCTTTGTACTGTCATTC  846

seq1  CTATGGCCCATCACTGGCCTCATATTTTGTACCCAGCACAGGTACCAACA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCCCATCACTGGCCTCATATTTTGTACCCAGCACAGGTACCAACA  896

seq1  AGTCAGAAAAGATACTAAAAGCAGCAAAGCCAAACTCTTTCTGCAAGCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGAAAAGATACTAAAAGCAGCAAAGCCAAACTCTTTCTGCAAGCAA  946

seq1  CCCAAATGGAGATGCCAGGAGCATGTCTGTTGCCAGTCCTCCATGCAGCC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATGGAGATGCCAGGAGCATGTCTGTTGCCAGTCCTCCATGCAGCC  996

seq1  TGCATACCACGCAGGTGCTAGCTCCACTCCGGGTTACTTCCTTCTGTCTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACCACGCAGGTGCTAGCTCCACTCCGGGTTACTTCCTTCTGTCTA  1046

seq1  GACTCTACAGAAGTCTTAATTCCTAGCTCCTACTTCTGCAAAGGATGCAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTACAGAAGTCTTAATTCCTAGCTCCTACTTCTGCAAAGGATGCAC  1096

seq1  AGACCAATTTGCCTTAAGAGAATTC  1117
      |||||||||||||||||||||||||
seq2  AGACCAATTTGCCTTAAGAGAATTC  1121