BAC Information

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BAC

Clone NameB6Ng01-281N19
Chromosome15 (Build37)
Map Location 32,813,253 - 32,814,436
singlet/doubletsinglet
Overlap genenone
Upstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962
Downstream geneSdc2, Pgcp, 1700084J12Rik, Tspyl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-281N19.bB6Ng01-281N19.g
ACCGA081228GA081229
length1,0851,187
definitionB6Ng01-281N19.b B6Ng01-281N19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaataaggacacatgctccactgtgttcatagcagccttatttag
aatagccagaagctggaaagaacccagatgtccctcaacagaggaatgga
tacagaaaatgtggtgcatttacacaatggagtactactcagctatgaaa
agcaatgaatttatgaaattcttaggcaaatagatggatctggaagatat
catcctgagtgaggtaacccaatcacaaaagaagtcacttgatatgcact
cactgataagtgtatattagcccagaaacttagaatacccaagatacaat
ttgaaaaacacaagaaaatcaagaaaaacgaagaccaacatgtggatact
tcattcctccttagaacagggaacaaaatacccatggaagatattaaaaa
caatgagtttgtaaacttcttaggcaaatcgatggatctggaggatatca
agttgagtgagataacccaatcacaaaagaacacacatgatatacactca
ctgataagtgaatattagcccagaagctcagaatccttcttagaagggtg
aacaaaatacccatggaaggagttacagagacaaagttcagagcagagtt
tgaaggaatgaccatacagagactgccccacttggggatccatcccataa
acaaccaccaaacccagacattatggcagatgccaacaagagcctgcaga
caggaacctgatataactgtctcctgagggtctttgccagtgcctggcaa
atacagaagtggatgctcacaatcatcctctggatggagcataggtcccc
aatgaaggaactagagaaagtatccaagtagcttaaaggggtctgaagcc
ccataggaggaacatcaatatgatctaaccagaactcccacagctccttg
gaactaaaccaccaatcaaagaaaacacatggtgggacatgtggctctag
ctgtatatgtagctgagatggcctagtggtcatcaatggagagagcccta
gtctctgaagttctatgcctcagtatagggagccagaactgggaaatggg
gagtggatgggcctggaaatgggggaagtgggaat

gaattcaggttgtcagagttgaaaacaagtacctttacctggtaaaccat
ttaactagactaagcccttggcttttaatggggttcctgtctcagatttg
caaaataaaaaatgtttcaagatgcagagagatggaggaaggcactcaac
attacactctggcctctatactcatgtatacatgcacccacttgtgtatg
tacacatatgaacacattcataagcacatgttatatatatgcacacatat
ttttaaaatttcatttttacctttagttgtatttagttggagtgtgttaa
ttctcactagaatgtttatttccaaatggctcagctattccctcatatat
ctatgaaatatagtaaaaaatttttgttgaatgaatgaataaatgattaa
atgcatgtgccttgaaatggagtggaatctgctaaagacttgctttcaga
ctgtaacataacaaatgtgtgttgcttttaagctacaaagtttgtggtac
ttggcacattggccacagcatactatataccccatctataatttagttga
agtggttgctaaataggagcagcagcaagggggacaatgaatatggagac
tcagagcaagccgcctgaattcaacactctgctcagtcaggtgtctggtg
cataaatgcagttaagtaagcaatatttccttatgtttataactcagaat
gagaacagtgcctacctcaatggattgttgtgaagagtaaacatctaatt
aaaagaaaggctcacagtagtggctggaatgcaagaagcaccacactgtg
taagcatttgtttttatttattcttaatctcatcctacactgggagcagt
tcatgatggtaaactttgttccccagtttaacatacacttccatcaatgg
tggagttctattaagtcaccttatctcaagtcctggcttctctgcttcca
agctgcaggccagtcattctgctcagaatgcttctattctggaagcatga
ggtgactcccatgtcaatctgacatagatgtagtgctcccgtgcctagaa
tatctggccacctcatttactatcacgatgttccttttaccttgctatga
gagctgtgttggaatgttggaaactgtccattttggccaggagagagcct
ccacctctgttaagagattccactcttacatataaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_32813253_32814436
seq2: B6Ng01-281N19.g_69_1255

seq1  GAATTCAGGTTGTCAGAGTTGAAAACAAGTACCTTTACCTGGTAAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGTTGTCAGAGTTGAAAACAAGTACCTTTACCTGGTAAACCAT  50

seq1  TTAACTAGACTAAGCCCTTGGCTTTTAATGGGGTTCCTGTCTCAGATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTAGACTAAGCCCTTGGCTTTTAATGGGGTTCCTGTCTCAGATTTG  100

seq1  CAAAATAAAAAATGTTTCAAGATGCAGAGAGATGGAGGAAGGCACTCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAAAAAATGTTTCAAGATGCAGAGAGATGGAGGAAGGCACTCAAC  150

seq1  ATTACACTCTGGCCTCTATACTCATGTATACATGCACCCACTTGTGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTCTGGCCTCTATACTCATGTATACATGCACCCACTTGTGTATG  200

seq1  TACACATATGAACACATTCATAAGCACATGTTATATATATGCACACATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATATGAACACATTCATAAGCACATGTTATATATATGCACACATAT  250

seq1  TTTTAAAATTTCATTTTTACCTTTAGTTGTATTTAGTTGGAGTGTGTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTTCATTTTTACCTTTAGTTGTATTTAGTTGGAGTGTGTTAA  300

seq1  TTCTCACTAGAATGTTTATTTCCAAATGGCTCAGCTATTCCCTCATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTAGAATGTTTATTTCCAAATGGCTCAGCTATTCCCTCATATAT  350

seq1  CTATGAAATATAGTAAAAAATTTTTGTTGAATGAATGAATAAATGATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAATATAGTAAAAAATTTTTGTTGAATGAATGAATAAATGATTAA  400

seq1  ATGCATGTGCCTTGAAATGGAGTGGAATCTGCTAAAGACTTGCTTTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGCCTTGAAATGGAGTGGAATCTGCTAAAGACTTGCTTTCAGA  450

seq1  CTGTAACATAACAAATGTGTGTTGCTTTTAAGCTACAAAGTTTGTGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAACATAACAAATGTGTGTTGCTTTTAAGCTACAAAGTTTGTGGTAC  500

seq1  TTGGCACATTGGCCACAGCATACTATATACCCCATCTATAATTTAGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACATTGGCCACAGCATACTATATACCCCATCTATAATTTAGTTGA  550

seq1  AGTGGTTGCTAAATAGGAGCAGCAGCAAGGGGGACAATGAATATGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTGCTAAATAGGAGCAGCAGCAAGGGGGACAATGAATATGGAGAC  600

seq1  TCAGAGCAAGCCGCCTGAATTCAACACTCTGCTCAGTCAGGTGTCTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGCAAGCCGCCTGAATTCAACACTCTGCTCAGTCAGGTGTCTGGTG  650

seq1  CATAAATGCAGTTAAGTAAGCAATATTTCCTTATGTTTATAACTCAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATGCAGTTAAGTAAGCAATATTTCCTTATGTTTATAACTCAGAAT  700

seq1  GAGAACAGTGCCTACCTCAATGGATTGTTGTGAAGAGTAAACATCTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGTGCCTACCTCAATGGATTGTTGTGAAGAGTAAACATCTAATT  750

seq1  AAAAGAAAGGCTCACAGTAGTGGCTGGAATGCAAGAAGCACCACACTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGGCTCACAGTAGTGGCTGGAATGCAAGAAGCACCACACTGTG  800

seq1  TAAGCATTTGTTTTTATTTATTCTTAATCTCATCCTACACTGGGAGCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATTTGTTTTTATTTATTCTTAATCTCATCCTACACTGGGAGCAGT  850

seq1  TCATGATGGTAAACTTTGTTCCCCAGTTTAACATACACTTCCATCAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATGGTAAACTTTGTTCCCCAGTTTAACATACACTTCCATCAATGG  900

seq1  TGGAGTTCTATTAAGTCACCTTATCTCAAAGTCCTGGCTTCTCTGCTTCC  950
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGGAGTTCTATTAAGTCACCTTATCTC-AAGTCCTGGCTTCTCTGCTTCC  949

seq1  AAGGCTGCAGGCCAGTCATTCTGCTCAGAATGCTTCTATTCTGGAAGCAT  1000
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GCTGCAGGCCAGTCATTCTGCTCAGAATGCTTCTATTCTGGAAGCAT  998

seq1  GAGGGTGACTCCCATGTCAATCTGACATAGATGTAGTTGGTTCCCTTGCC  1050
      || ||||||||||||||||||||||||||||||||||  | |||| || |
seq2  GA-GGTGACTCCCATGTCAATCTGACATAGATGTAGT--GCTCCCGTG-C  1044

seq1  CTAG-ATATCTTGCCA-CTCATTTACCTATCACGGATGTCCTTTTTACTT  1098
      |||| |||||| |||| |||||||| ||||||| ||||| | |||||| |
seq2  CTAGAATATCTGGCCACCTCATTTA-CTATCAC-GATGTTCCTTTTACCT  1092

seq1  TGGCTTATGAAGAGGCTGTGTT-GAATGTTGAAACTTGTCAATTTTGGCC  1147
      ||   |||| ||| |||||||| |||||||| ||  |||| |||||||||
seq2  TG--CTATG-AGA-GCTGTGTTGGAATGTTGGAAACTGTCCATTTTGGCC  1138

seq1  AGGAGA-AGCCCTCA-CTCTGTT---AGA-TCCACTC------ATAAAG  1184
      |||||| ||||  || |||||||   ||| |||||||      ||||||
seq2  AGGAGAGAGCCTCCACCTCTGTTAAGAGATTCCACTCTTACATATAAAG  1187


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