BAC Information

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BAC

Clone NameB6Ng01-282E04
Chromosome15 (Build37)
Map Location 80,650,582 - 80,847,306
singlet/doubletdoublet
Overlap geneTnrc6b, Adsl, LOC625672, Rutbc3, Mkl1
Upstream geneNpcd, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneLOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2, Phf5a, Aco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-282E04.bB6Ng01-282E04.g
ACCGA081526GA081527
length1,1051,100
definitionB6Ng01-282E04.b B6Ng01-282E04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,650,582 - 80,651,701)(80,846,229 - 80,847,306)
sequence
gaattcatgtggtagaagaaaggattgagttacataggttagcctctaac
ctccacatgcacacatttttcacacaataaataattgaaaatattttttt
tctattccagcctgtgttgttacagacatgataggtacctcaaaacaaaa
cacatttccagtcctgtgctattgatgctcttgagccgggagcccaggca
ccttagtacatcatagagacctcatatgtcacacagcatgccaactttct
cacccactcagtgtctgacttgtcaccttaatggattcccaccagagtcc
tctggctgtatggcccagcttcctctttgaaggcttcacccatgtcttcc
cacccagttgtccttcaggtatgttatggaaatgcacacatgtctggtgg
aatggaattagaagtctttgatgactttggcatccctttacagttctagc
ggtcctttggtttttccttggctttttttttttttccttttttctttttt
ctttttctttcttagttctgggagttaaggtcctggctgaaacatgctgg
acaattactctaccacaaagccacacccctggccttcagttacacgggag
ttccatatttaagacatttgagactcagtatcttcgtttctcatctccag
tttagcagatcagctcgtgctgtgaggccctctgctgatgttttatttca
ttttgttttcccttttttcccacatggcaggggcaggtgagaagtacctt
taaaatttgcagaaaattctattctcgtctgtctttatgtgggttcagtg
atgtagaatccagaggggccattagtcacagagtgggaagatagcagcca
gtatcagcctcggcctcaggtgtgtccttcattgttctccgtgtgcctct
cacctttccttccaggcttgcttctttctagctttctgtatagagtccct
gcctctgatatatcttctttggtcccctacttctcatttctacttgctct
acagaaattaaaagagaatttaggaaaaaagaaagcaaattacgagaaga
agataaactttattttgaaacagctgctgcgtatttctggctgctcaaac
tcaag
gaattccacacctggggatgcctttggtgaaatggtgacatcgccgctga
cacagctcaccctgcaggcctccccactgcagatcgtgaaggaggagggt
gcccgtgctgcgtcctgctgtctaagccctggtgctcgggctgagctgga
gggactggacaaggaccagatgctgcaggagaaggacaagcagattgagg
agctgacccgaatgctccaacagaagcagcagctggttgagctgctgcgg
ctacagctggagcagcagaagcgggcccagcagccagccccagccagcag
ccctgtgaagagggaaagtggtttctccagttgccagctgagctgccagc
cccagggctctgcccatgcttttggctctggcctagtggttcccactacc
aaccatggagacactcaggccccagcgccagagtccccacctgtggtggt
gaagcaggaagctgggccacctgagccagatctggcccccagctcccagc
tgctcttgggctcccagggcaccagcttcctcaagagggtcagccctcct
accctggtcactgactctacagggactcacctcatcctcactgtgaccaa
taagagtgctgatggccctggcttgcctgcagggagcccccagcaggtag
ctgatgaacaggggcaggctggggtggcatgtctgggtggagatttgaac
actgtcttctgcaggctgtattatcacactcaggacctgggttcctgaag
ggacttcctttgaggcccaggtgttctgtcacactacagcttgcatactt
acccccattctttatctcctctttccttatccacgagaaactcccaaaag
tctggttagctaagtaaagttcttcctatggggcagagaaaggatctttc
ccctactcaggcaattgtggaagcctttgcccttggtcgctacccacaca
ccaacgtttctcccattctccatctagcccttgtcccagctggattcact
cagcccctggtcccacctgcacaagaatggaccctgtagcaaccacccta
gactctcgtattgcaacccccatcaatctctgtctgaagaaggagccccc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_80650582_80651701
seq2: B6Ng01-282E04.b_45_1149

seq1  GAATTCATGTGGTAGAAGAAAGGATTGAGTTACATAGGTTAGCCTCTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTGGTAGAAGAAAGGATTGAGTTACATAGGTTAGCCTCTAAC  50

seq1  CTCCACATGCACACATTTTTCACACAATAAATAATTGAAAATATTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATGCACACATTTTTCACACAATAAATAATTGAAAATATTTTTTT  100

seq1  TCTATTCCAGCCTGTGTTGTTACAGACATGATAGGTACCTCAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCAGCCTGTGTTGTTACAGACATGATAGGTACCTCAAAACAAAA  150

seq1  CACATTTCCAGTCCTGTGCTATTGATGCTCTTGAGCCGGGAGCCCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCCAGTCCTGTGCTATTGATGCTCTTGAGCCGGGAGCCCAGGCA  200

seq1  CCTTAGTACATCATAGAGACCTCATATGTCACACAGCATGCCAACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTACATCATAGAGACCTCATATGTCACACAGCATGCCAACTTTCT  250

seq1  CACCCACTCAGTGTCTGACTTGTCACCTTAATGGATTCCCACCAGAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACTCAGTGTCTGACTTGTCACCTTAATGGATTCCCACCAGAGTCC  300

seq1  TCTGGCTGTATGGCCCAGCTTCCTCTTTGAAGGCTTCACCCATGTCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGTATGGCCCAGCTTCCTCTTTGAAGGCTTCACCCATGTCTTCC  350

seq1  CACCCAGTTGTCCTTCAGGTATGTTATGGAAATGCACACATGTCTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTTGTCCTTCAGGTATGTTATGGAAATGCACACATGTCTGGTGG  400

seq1  AATGGAATTAGAAGTCTTTGATGACTTTGGCATCCCTTTACAGTTCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAATTAGAAGTCTTTGATGACTTTGGCATCCCTTTACAGTTCTAGC  450

seq1  GGTCCTTTGGTTTTTCCTTGGCTTTTTTTTTTTTTCCTTTTTTCTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTGGTTTTTCCTTGGCTTTTTTTTTTTTTCCTTTTTTCTTTTTT  500

seq1  CTTTTTCTTTCTTAGTTCTGGGAGTTAAGGTCCTGGCTGAAACATGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTTCTTAGTTCTGGGAGTTAAGGTCCTGGCTGAAACATGCTGG  550

seq1  ACAATTACTCTACCACAAAGCCACACCCCTGGCCTTCAGTTACACGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTACTCTACCACAAAGCCACACCCCTGGCCTTCAGTTACACGGGAG  600

seq1  TTCCATATTTAAGACATTTGAGACTCAGTATCTTCGTTTCTCATCTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATATTTAAGACATTTGAGACTCAGTATCTTCGTTTCTCATCTCCAG  650

seq1  TTTAGCAGATCAGCTCGTGCTGTGAGGCCCTCTGCTGATGTTTTATTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCAGATCAGCTCGTGCTGTGAGGCCCTCTGCTGATGTTTTATTTCA  700

seq1  TTTTGTTTTCCCTTTTTTCCCACATGGCAGGGGCAGGTGAGAAGTACCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTCCCTTTTTTCCCACATGGCAGGGGCAGGTGAGAAGTACCTT  750

seq1  TAAAATTTGCAGAAAATTCTATTCTCGTCTGTCTTTATGTGGGTTCAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTGCAGAAAATTCTATTCTCGTCTGTCTTTATGTGGGTTCAGTG  800

seq1  ATGTAGAATCCAGAGGGGCCATTAGTCACAGAGTGGGAAGATAGCAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAATCCAGAGGGGCCATTAGTCACAGAGTGGGAAGATAGCAGCCA  850

seq1  GTATCAGCCTCGGCCTCAGGTGTGTCCTTCATTGTTCTCCGTGTGCCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGCCTCGGCCTCAGGTGTGTCCTTCATTGTTCTCCGTGTGCCTCT  900

seq1  CACCTTTCCTTCCAGGCTTGCTTCTTTCTAGCTTTCTGTATAGAGTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCCTTCCAGGCTTGCTTCTTTCTAGCTTTCTGTATAGAGTCCCT  950

seq1  GCCTCTGATATTATCTTCTTTGGTCCCCTACTTCTCATTTCTACTTGCCT  1000
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  GCCTCTGATA-TATCTTCTTTGGTCCCCTACTTCTCATTTCTACTTG-CT  998

seq1  CTACAGAAA-TAAAAGAGAATTTAAGGAAAAAAGAAAGCAAATAACGGAG  1049
      ||||||||| ||||||||||||| ||||||||||||||||||| || |||
seq2  CTACAGAAATTAAAAGAGAATTT-AGGAAAAAAGAAAGCAAATTAC-GAG  1046

seq1  AAAGGAAAGAATAAACTTTATTTTTGGAGACAGGGCCTTGCTGCGTATTT  1099
      ||  |||   ||||||||||||||  || ||||     ||||||||||||
seq2  AA--GAA--GATAAACTTTATTTT--GAAACAG----CTGCTGCGTATTT  1086

seq1  CTGGCTGGCCTCAAACTCAAG  1120
      |||||||  ||||||||||||
seq2  CTGGCTG--CTCAAACTCAAG  1105

seq1: chr15_80846229_80847306
seq2: B6Ng01-282E04.g_66_1165 (reverse)

seq1  GGGGGCTCCTTCTTCAG-CAGAGAT--GTGGGGGTTGCAA-ACG-GAGGC  45
      ||||||||||||||||| |||||||   |||||||||||| ||| ||| |
seq2  GGGGGCTCCTTCTTCAGACAGAGATTGATGGGGGTTGCAATACGAGAGTC  50

seq1  TGAGGTGGGTGCTCCA-GGTCCAT--CTGGGCAGGT-GGACCAGGGGCTG  91
      |  ||||| |||| || |||||||   || |||||| |||||||||||||
seq2  TAGGGTGGTTGCTACAGGGTCCATTCTTGTGCAGGTGGGACCAGGGGCTG  100

seq1  -GAGAACCAGGCTGGGACAAGGGCTAGATGGGAGAATGGGAGAAACGTTT  140
       | ||| |  ||||||||||||||||||| ||||||||||||||||||| 
seq2  AGTGAATCCAGCTGGGACAAGGGCTAGAT-GGAGAATGGGAGAAACGTTG  149

seq1  GTTGGTGTGGGTAGGGA-CAAGG--CAAGGC-TCCACATTTGCCGGGGT-  185
      ||  |||||||||| || |||||   ||||| |||||| ||||| | || 
seq2  GT--GTGTGGGTAGCGACCAAGGGCAAAGGCTTCCACAATTGCCTGAGTA  197

seq1  GGGGAAGGCTCC-TTCACTG-CCCATAGGAAGAACTTTGC-TAGCTAA-C  231
      |||||| | ||| ||| ||| ||||||||||||||||| | ||||||| |
seq2  GGGGAAAGATCCTTTCTCTGCCCCATAGGAAGAACTTTACTTAGCTAACC  247

seq1  AGACTTTTGGGAG-TTCTCGTGGAT-AGGGAAGAGGAGATAAAGAAT-GG  278
      ||||||||||||| ||||||||||| ||| ||||||||||||||||| ||
seq2  AGACTTTTGGGAGTTTCTCGTGGATAAGGAAAGAGGAGATAAAGAATGGG  297

seq1  GGTAAGTATGC-AGCTGTAGGGTGACAGAACACC-GGGCCTC-AAGGAAG  325
      ||||||||||| |||||||| ||||||||||||| ||||||| |||||||
seq2  GGTAAGTATGCAAGCTGTAGTGTGACAGAACACCTGGGCCTCAAAGGAAG  347

seq1  TCCCTTCAGGAACCCAGGTCCTGAGTGTGATAATACAGCCTGCAGAAGAC  375
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAGGAACCCAGGTCCTGAGTGTGATAATACAGCCTGCAGAAGAC  397

seq1  AGTGTTCAATTCTCCACCCAGACATGCCACCCCAGCCTGCCCCTGTTCAT  425
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCAAATCTCCACCCAGACATGCCACCCCAGCCTGCCCCTGTTCAT  447

seq1  CAGCTACCTGCTGGGGGCTCCCTGCAGGCAAGCCAGGGCCATCAGCACTC  475
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACCTGCTGGGGGCTCCCTGCAGGCAAGCCAGGGCCATCAGCACTC  497

seq1  TTATTGGTCACAGTGAGGATGAGGTGAGTCCCTGTAGAGTCAGTGACCAG  525
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGTCACAGTGAGGATGAGGTGAGTCCCTGTAGAGTCAGTGACCAG  547

seq1  GGTAGGAGGGCTGACCCTCTTGAGGAAGCTGGTGCCCTGGGAGCCCAAGA  575
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGAGGGCTGACCCTCTTGAGGAAGCTGGTGCCCTGGGAGCCCAAGA  597

seq1  GCAGCTGGGAGCTGGGGGCCAGATCTGGCTCAGGTGGCCCAGCTTCCTGC  625
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGGAGCTGGGGGCCAGATCTGGCTCAGGTGGCCCAGCTTCCTGC  647

seq1  TTCACCACCACAGGTGGGGACTCTGGCGCTGGGGCCTGAGTGTCTCCATG  675
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCACCACAGGTGGGGACTCTGGCGCTGGGGCCTGAGTGTCTCCATG  697

seq1  GTTGGTAGTGGGAACCACTAGGCCAGAGCCAAAAGCATGGGCAGAGCCCT  725
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGTGGGAACCACTAGGCCAGAGCCAAAAGCATGGGCAGAGCCCT  747

seq1  GGGGCTGGCAGCTCAGCTGGCAACTGGAGAAACCACTTTCCCTCTTCACA  775
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGCAGCTCAGCTGGCAACTGGAGAAACCACTTTCCCTCTTCACA  797

seq1  GGGCTGCTGGCTGGGGCTGGCTGCTGGGCCCGCTTCTGCTGCTCCAGCTG  825
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTGGCTGGGGCTGGCTGCTGGGCCCGCTTCTGCTGCTCCAGCTG  847

seq1  TAGCCGCAGCAGCTCAACCAGCTGCTGCTTCTGTTGGAGCATTCGGGTCA  875
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGCAGCAGCTCAACCAGCTGCTGCTTCTGTTGGAGCATTCGGGTCA  897

seq1  GCTCCTCAATCTGCTTGTCCTTCTCCTGCAGCATCTGGTCCTTGTCCAGT  925
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCAATCTGCTTGTCCTTCTCCTGCAGCATCTGGTCCTTGTCCAGT  947

seq1  CCCTCCAGCTCAGCCCGAGCACCAGGGCTTAGACAGCAGGACGCAGCACG  975
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCAGCTCAGCCCGAGCACCAGGGCTTAGACAGCAGGACGCAGCACG  997

seq1  GGCACCCTCCTCCTTCACGATCTGCAGTGGGGAGGCCTGCAGGGTGAGCT  1025
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCCTCCTCCTTCACGATCTGCAGTGGGGAGGCCTGCAGGGTGAGCT  1047

seq1  GTGTCAGCGGCGATGTCACCATTTCACCAAAGGCATCCCCAGGTGTGGAA  1075
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGCGGCGATGTCACCATTTCACCAAAGGCATCCCCAGGTGTGGAA  1097

seq1  TTC  1078
      |||
seq2  TTC  1100