BAC Information

Click to search

BAC

Clone NameB6Ng01-284J13
Chromosome15 (Build37)6 (Build37)
Map Location 20,938,111 - 20,938,16872,356,805 - 72,357,416
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAcot10, LOC100040302
Downstream geneCdh12, LOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284J13.bB6Ng01-284J13.g
ACCGA083258GA083259
length76613
definitionB6Ng01-284J13.b B6Ng01-284J13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(20,938,111 - 20,938,168)(72,356,805 - 72,357,416)
sequence
gaattcaaagacatcctgggctataagataccctgtcttaaaagaagaag
aaggaagggagggaaggagagaggga
gaattctgcttcctttgatggacgctgggcatccatccctttctacctca
ggtttgttcttcagcttgtcagaggagtgaggaatgcttatctcaaaacc
aagttagagtgaagacatcggccacctaacccatgtcccagtgtgtgtat
gtgtgtgcacatgcatgcatgtgggtatatgtgtgtgcacatgtatgcat
gtaggtgtatcccggaggttaatggctaatgtctttttttttttttttta
atttttggttttttgagacagggtttctctgtgtagccctggctgtcctg
gaactcactttgtagaccaggctggcctcgaactcagaaatccacctgcc
tctgcctcccgagtgctaggattaaagatgtgcgctatcatctttggcta
tttattatttttactttatgtgtttgtgttgcctgcatatatgtccatgc
accaggtgcatgcagtgccccgggagcccacaagagggagtcaggatgcc
ttggaactagagttacggatggttgggagccaccatgtggttgctccaaa
ccttggtttttctgcaagagcagtaagagcccttaaccactgagtcatct
ctccagtccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_20938111_20938168
seq2: B6Ng01-284J13.b_84_120 (reverse)

seq1  TCCCTCTCTCCTTCCCTCCTCTTCCTTCTATTGCTCTCCTTGTTCCTATT  50
      ||||||||||||||||||| ||||||||                    ||
seq2  TCCCTCTCTCCTTCCCTCC-CTTCCTTC--------------------TT  29

seq1  CTTCTTTT  58
      ||||||||
seq2  CTTCTTTT  37

seq1: chr6_72356805_72357416
seq2: B6Ng01-284J13.g_67_679

seq1  GAATTCTGCTTCCTTTGATGGACGCTGGGCATCCATCCCTTTCTACCTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTCCTTTGATGGACGCTGGGCATCCATCCCTTTCTACCTCA  50

seq1  GGTTTGTTCTTCAGCTTGTCAGAGGAGTGAGGAATGCTTATCTCAAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTTCTTCAGCTTGTCAGAGGAGTGAGGAATGCTTATCTCAAAACC  100

seq1  AAGTTAGAGTGAAGACATCGGCCACCTAACCCATGTCCCAGTGTGTGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGAGTGAAGACATCGGCCACCTAACCCATGTCCCAGTGTGTGTAT  150

seq1  GTGTGTGCACATGCATGCATGTGGGTATATGTGTGTGCACATGTATGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCACATGCATGCATGTGGGTATATGTGTGTGCACATGTATGCAT  200

seq1  GTAGGTGTATCCCGGAGGTTAATGGCTAATGTCTTTTTTTTTTTTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGTATCCCGGAGGTTAATGGCTAATGTCTTTTTTTTTTTTTTTTA  250

seq1  ATTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTG  300

seq1  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCC  350

seq1  TCTGCCTCCCGAGTGCTAGGATTAAAGATGTGCGCTATCATCTTTGGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCGAGTGCTAGGATTAAAGATGTGCGCTATCATCTTTGGCTA  400

seq1  TTTATTATTTTTACTTTATGTGTTTGTGTTGCCTGCATATATGTCCATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTTTACTTTATGTGTTTGTGTTGCCTGCATATATGTCCATGC  450

seq1  ACCAGGTGCATGCAGTGCCCCGGGAGCCCACAAGAGGGAGTCAGGATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGCATGCAGTGCCCCGGGAGCCCACAAGAGGGAGTCAGGATGCC  500

seq1  TTGGAACTAGAGTTACGGATGGTTGGGAGCCACCATGTGGTTGCTCCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTAGAGTTACGGATGGTTGGGAGCCACCATGTGGTTGCTCCAAA  550

seq1  CCTTGG-TTTTCTGCAAGAGCAGTAAGAGCCCTTAACCACTGAGTCATCT  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTTTTCTGCAAGAGCAGTAAGAGCCCTTAACCACTGAGTCATCT  600

seq1  CTCCAGTCCACCT  612
      |||||||||||||
seq2  CTCCAGTCCACCT  613