BAC Information

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BAC

Clone NameB6Ng01-285F12
Chromosome15 (Build37)
Map Location 65,800,995 - 65,940,655
singlet/doubletdoublet
Overlap geneF930104E18Rik, Kcnq3
Upstream geneLOC268812, LOC100040790, LOC665836, C920006C10Rik, Oc90, LOC100040835
Downstream geneLrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285F12.bB6Ng01-285F12.g
ACCGA083818GA083819
length1,1321,077
definitionB6Ng01-285F12.b B6Ng01-285F12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,800,995 - 65,802,122)(65,939,994 - 65,940,655)
sequence
gaattctcgcatacacacatgcatacagcacacacacacacacacacaca
cacacacacccttctcataattccttccagatcaatctgctgttcctctg
ttatgtagcactgcattctacagacaaactcattgagacaggaagtaaac
aacttaaaatagttttaggaagcctcatattcactacgaaccttcctcct
caagattatataaacagcaaagacagctgagagtcactctcagacaagcc
cgtctgcctggcaggagcagggaccagctcagtttcctgggagaaataaa
aaccagctgagctgccttttaagaggattggagcaacttggagggtacac
tttccaaccttccttatggctgtgcagtgcactccaggtttccagctttt
gtgagctgtcaacatgtccagatgggctttggtgatgcagctagttttga
ataatttctgttcctgtaagtgaccccttacccatattcctataagtaac
cctagttacttacagttcactatgttggactttggtggtatctgtacgtt
cttacattgtaggtaggttgtgcatctatgataagtagacatgtgtgttt
caactccccaggaaaaatccattccattctagaacacccctcctccactg
ccaactttatgtcctcctttatttataagctactgaatccagtttgtgct
gcccatatactcatgggtgtgggaccattcactggagtctgtttgaccta
gtagggataacatctttaaagaaaattgacttttcttctcctaaaaggca
ttcactctgagtagctcttcagaaaggggtggggctcatgatctcttcca
accctgcaatgtataagccttgaacatcaatagttacatatgccactctc
ttctaaagttagaaattcttgtttttcagtatttgtaaataaattttgaa
agtctacggtcaatgtccctgaaaaccagaaatggtttttctgtggaaac
aagtacattttgtattatttgcctttcagatgtcttaatttgtggtgtgt
gtgtgtcaatgttatgttcaccatgtgtgcctgtgcacaggcatgtgagt
gagacagagataaacttgctgctaatacctta
gaattcatctatggaaggatgcatgggctggactacattaaaatttaatt
tttcggctttatggatgacagtgtaaaatgaggtaagaggtaggctgggc
gtgaacatttcctcagtatctgttaaattaaaaagaaaattctatcatga
aaagaaaatgcaactagatcttcaaacttaacagtaagaacattattgtt
tgcctaaaagtaagttgaccagatgggaagacatgactaagaagaggctg
cactgcgcatgcatgtgaacatttctcttcagggaaatgcacattcaagc
aacagtgaagcaatattcaatttggaggtcccaaatccaggacacccacg
gaggacaccaaatgttgtcgaggacatgaagcaacaggaacactccttcg
ctgttagtggaaatgcagcaaaatggtgcatccattttggaagatggctt
ggaagtcttacaaaactatcctcttacggtgtctgcaccgaggagtcgaa
catgcatggctacacaggaccttgcacatggatggcactgttaacttata
attgccccaacctggaagctatccaaatgcccttcagtaaatgagcagat
gcagaaactgtgttgctaaaaaccacatagtactttacaaagcacccaag
tcctgaaaggatacagaaggaagaattgcacatcaccaaatggaaaaaat
ccatcttaaaaacctacaggggactggagagatggctcagtggttaagag
cacctactgctcttcagaaggtcctgagttcaaatcccagcaaccacatg
gtggctaacaaccatccgtaatgagatctgatgccctcttctggtgcatc
tgaagacagctacagtgtacttagatataataataaataaatcttaaaaa
aaaaaaaaacccctacaggatatgtgctttcccactccaagaaagctgaa
actctgggaatgtgacccaggcacaggcattaatgaagggagagtatggg
ctgattgggcacacagagttttaggtcagtaatactctctggctgttggt
gtgctggtggacacctcgccctgtctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_65800995_65802122
seq2: B6Ng01-285F12.b_47_1178

seq1  GAATTCTCGCATACACACATGCATACAGCACACACACACACACACACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGCATACACACATGCATACAGCACACACACACACACACACACA  50

seq1  CACACACACCCTTCTCATAATTCCTTCCAGATCAATCTGCTGTTCCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACCCTTCTCATAATTCCTTCCAGATCAATCTGCTGTTCCTCTG  100

seq1  TTATGTAGCACTGCATTCTACAGACAAACTCATTGAGACAGGAAGTAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTAGCACTGCATTCTACAGACAAACTCATTGAGACAGGAAGTAAAC  150

seq1  AACTTAAAATAGTTTTAGGAAGCCTCATATTCACTACGAACCTTCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAATAGTTTTAGGAAGCCTCATATTCACTACGAACCTTCCTCCT  200

seq1  CAAGATTATATAAACAGCAAAGACAGCTGAGAGTCACTCTCAGACAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTATATAAACAGCAAAGACAGCTGAGAGTCACTCTCAGACAAGCC  250

seq1  CGTCTGCCTGGCAGGAGCAGGGACCAGCTCAGTTTCCTGGGAGAAATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGCCTGGCAGGAGCAGGGACCAGCTCAGTTTCCTGGGAGAAATAAA  300

seq1  AACCAGCTGAGCTGCCTTTTAAGAGGATTGGAGCAACTTGGAGGGTACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTGAGCTGCCTTTTAAGAGGATTGGAGCAACTTGGAGGGTACAC  350

seq1  TTTCCAACCTTCCTTATGGCTGTGCAGTGCACTCCAGGTTTCCAGCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAACCTTCCTTATGGCTGTGCAGTGCACTCCAGGTTTCCAGCTTTT  400

seq1  GTGAGCTGTCAACATGTCCAGATGGGCTTTGGTGATGCAGCTAGTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTGTCAACATGTCCAGATGGGCTTTGGTGATGCAGCTAGTTTTGA  450

seq1  ATAATTTCTGTTCCTGTAAGTGACCCCTTACCCATATTCCTATAAGTAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTCTGTTCCTGTAAGTGACCCCTTACCCATATTCCTATAAGTAAC  500

seq1  CCTAGTTACTTACAGTTCACTATGTTGGACTTTGGTGGTATCTGTACGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTACTTACAGTTCACTATGTTGGACTTTGGTGGTATCTGTACGTT  550

seq1  CTTACATTGTAGGTAGGTTGTGCATCTATGATAAGTAGACATGTGTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATTGTAGGTAGGTTGTGCATCTATGATAAGTAGACATGTGTGTTT  600

seq1  CAACTCCCCAGGAAAAATCCATTCCATTCTAGAACACCCCTCCTCCACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCCCAGGAAAAATCCATTCCATTCTAGAACACCCCTCCTCCACTG  650

seq1  CCAACTTTATGTCCTCCTTTATTTATAAGCTACTGAATCCAGTTTGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTATGTCCTCCTTTATTTATAAGCTACTGAATCCAGTTTGTGCT  700

seq1  GCCCATATACTCATGGGTGTGGGACCATTCACTGGAGTCTGTTTGACCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATATACTCATGGGTGTGGGACCATTCACTGGAGTCTGTTTGACCTA  750

seq1  GTAGGGATAACATCTTTAAAGAAAATTGACTTTTCTTCTCCTAAAAGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGATAACATCTTTAAAGAAAATTGACTTTTCTTCTCCTAAAAGGCA  800

seq1  TTCACTCTGAGTAGCTCTTCAGAAAGGGGTGGGGCTCATGATCTCTTCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTCTGAGTAGCTCTTCAGAAAGGGGTGGGGCTCATGATCTCTTCCA  850

seq1  ACCCTGCAATGTATAAGCCTTGAACATCAATAGTTACATATGCCACTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCAATGTATAAGCCTTGAACATCAATAGTTACATATGCCACTCTC  900

seq1  TTCTAAAGTTAGAAATTCTTGTTTTTCAGTATTTGTAAATAAATTT--GA  948
      ||||||||||||||||||||||||||||||||||||||||||||||   |
seq2  TTCTAAAGTTAGAAATTCTTGTTTTTCAGTATTTGTAAATAAATTTTGAA  950

seq1  AGTCTACGGTCAATGTCCCTGAAAACCAGAAATGG-TTTTCTGTGGAAAC  997
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTCTACGGTCAATGTCCCTGAAAACCAGAAATGGTTTTTCTGTGGAAAC  1000

seq1  AAGTACATTTTGTATTATTTGCCTTTCAGATTGTCTT-ATTTGT-GTGTG  1045
      |||||||||||||||||||||||||||||| |||||| |||||| |||||
seq2  AAGTACATTTTGTATTATTTGCCTTTCAGA-TGTCTTAATTTGTGGTGTG  1049

seq1  TGTGTGTTCATG-TATGTTCA-CATGTGTGCCTGTGCACAAGCATGTGAG  1093
      |||||||  ||| |||||||| |||||||||||||||||| |||||||||
seq2  TGTGTGTCAATGTTATGTTCACCATGTGTGCCTGTGCACAGGCATGTGAG  1099

seq1  TGAGGACAGAAGATAAACTTGGCTGCT-ATACCTTA  1128
      ||| ||||| |||||||||| |||||| ||||||||
seq2  TGA-GACAG-AGATAAACTT-GCTGCTAATACCTTA  1132

seq1: chr15_65939994_65940655
seq2: B6Ng01-285F12.g_482_1145 (reverse)

seq1  GAGACA----GAGGTGTCCACCAGCACACCACCAGCCAGAGAGTAATTTA  46
      ||||||    ||||||||||||||||||||| |||||||||||||  |||
seq2  GAGACAGGGCGAGGTGTCCACCAGCACACCAACAGCCAGAGAGTA--TTA  48

seq1  CTGACCTAAAACTCTGTGTGCCCAATCAGCCCATACTTCTCCCTTCATTA  96
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGACCTAAAACTCTGTGTGCCCAATCAGCCCATAC-TCTCCCTTCATTA  97

seq1  ATGCCTGTGCCTGGTTCACATT-CCAGAGTTTCAGCTTTTCTTGGAGTGG  145
      |||||||||||||| ||||||| ||||||||||||| |||||||||||||
seq2  ATGCCTGTGCCTGGGTCACATTCCCAGAGTTTCAGC-TTTCTTGGAGTGG  146

seq1  GAAAGCACATATCCTGTAGGGG-TTTTTTTTTTTTTAAGATTTATTTATT  194
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAAGCACATATCCTGTAGGGGTTTTTTTTTTTTTTAAGATTTATTTATT  196

seq1  ATTATATCTAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGCA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATCTAAGTACACTGTAGCTGTCTTCAGATGCACCAGAAGAGGGCA  246

seq1  TCAGATCTCATTACGGATGGTTGTTAGCCACCATGTGGTTGCTGGGATTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCTCATTACGGATGGTTGTTAGCCACCATGTGGTTGCTGGGATTT  296

seq1  GAACTCAGGACCTTCTGAAGAGCAGTAGGTGCTCTTAACCACTGAGCCAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGACCTTCTGAAGAGCAGTAGGTGCTCTTAACCACTGAGCCAT  346

seq1  CTCTCCAGTCCCCTGTAGGTTTTTAAGATGGATTTTTTCCATTTGGTGAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGTCCCCTGTAGGTTTTTAAGATGGATTTTTTCCATTTGGTGAT  396

seq1  GTGCAATTCTTCCTTCTGTATCCTTTCAGGACTTGGGTGCTTTGTAAAGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTCTTCCTTCTGTATCCTTTCAGGACTTGGGTGCTTTGTAAAGT  446

seq1  ACTATGTGGTTTTTAGCAACACAGTTTCTGCATCTGCTCATTTACTGAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTGGTTTTTAGCAACACAGTTTCTGCATCTGCTCATTTACTGAAG  496

seq1  GGCATTTGGATAGCTTCCAGGTTGGGGCAATTATAAGTTAACAGTGCCAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGGATAGCTTCCAGGTTGGGGCAATTATAAGTTAACAGTGCCAT  546

seq1  CCATGTGCAAGGTCCTGTGTAGCCATGCATGTTCGACTCCTCGGTGCAGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGCAAGGTCCTGTGTAGCCATGCATGTTCGACTCCTCGGTGCAGA  596

seq1  CACCGTAAGAGGATAGTTTTGTAAGACTTCCAAGCCATCTTCCAAAATGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTAAGAGGATAGTTTTGTAAGACTTCCAAGCCATCTTCCAAAATGG  646

seq1  ATGCACCATTTTGCTGCA  662
      ||||||||||||||||||
seq2  ATGCACCATTTTGCTGCA  664