BAC Information

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BAC

Clone NameB6Ng01-285O17
Chromosome15 (Build37)18 (Build37)
Map Location 102,334,692 - 102,335,7926,140,016 - 6,140,531
singlet/doubletsingletsinglet
Overlap geneMap3k12
Upstream geneKrt85, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2
Downstream geneTarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285O17.bB6Ng01-285O17.g
ACCGA084245GA084246
length1,0991,013
definitionB6Ng01-285O17.b B6Ng01-285O17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(102,334,692 - 102,335,792)(6,140,016 - 6,140,531)
sequence
gaattccataaggatgcagtagcagggggcctgtgtgcaaacacccctga
gggccagacaggggtaaagcttaattatctgccttgtgtacctgggacct
acatttctacccatgccatttctgggtctcctttgagaaaggggatatag
tcccaggtgaggggagtcctatgtgtcatggtacccccagcccctgccct
ggacctcacttgaaagtgatgatgttggggtgcttcagctttcgaagatg
cttgatgtcagtctccttgagatctcgaaccttcttcacagctacctcct
ccccgtggaagcgtcccaggaaaacagcaccctgagcccctgagcctacc
cactgcaggtccaggatttcctcaaaggggacttcccaaaggtctgtagg
taggaggcacagtgccacagactcagacagatctgcactgaacttgagac
actcaagggttggctgaatatatcaatgatgagaaaacaaagtaggctga
aaagtctagtaaaggaaatacttgggtggtcttgtgaaaagctaggtgga
cataagggtgtatatgtgtatatatatatatatacacatatataaaactc
ttttgtagagcacttggctaggatgtgtaaaacccaagttcctgggttca
gtttcctagcacaatgtgagaaaatactgaagagctgaagattaagtaaa
acacttatctagcatgtagtgtttaatcctagcaccagaaacaaatgtaa
aggaaaataaagcggattaggaaggtttggtaggactgttgaaggaaatg
gagggtgttcttacagggatctggcctaccttcctgctgttgcttgtgtt
ctgtggagtaggcttttgccaatcattgtccagacagggcgcagcagcca
aaagaccttcaaggaagccactgccacttctggcactgcagacgtacctc
atcagcttcgaactctagatgctcgactctcagtgacccagtggctcccc
ttggcccacctgtatcctgctcatgtagctggaggacacttatgcaaaag
gcttctggggaggctcttccactggggagggctgggtctccctccaccc
gaattcagagcacttaggctgaggcggacagactgcggctgtgaggacag
cccaggctatgtagtgagttctcagggaagactgggctacacagaaagat
cctgcctcagaaaacaatagaaaggactggggaggcagtgtcattggtag
aactttgcaagcagaagacctgaactagatccacctcttccctcagaacc
aaaagcctggccatgaccatgcctttaatcccaatgccagagtggtagag
gctagtagatgcctgggactggctgagcagccagcctagcctactccatg
atttccaggccaatggaactctaccttgtcttaaagaaaaaaaaaaaaaa
agaggagctagagaatttgtacagtggttaagagcaactgttgctcctgt
agaggacctgagttcagtttccagaatccacctgtcggctcagaatcatc
tgtaactccagttgcagggcaccagatgatgctctcaccatatggatgct
gggatttgaactcaggaccttcggaagagcagtcagtgctcttaaccgct
gagccatctctccagccccagatgatgctctcttctgacctccttgggca
tcagacatgcatatgctgtgcaaacacacattcaggcaaaatacttatac
acataagattctttaaaatctttacaaataaaagaaaatttaaaaggtgg
attgtgaataaggaatgacatccaaggttgtcctctggcctccgtgcaca
cgggcacacagttgcactcacattcacatacacgcacacgattcttcatg
atctagttaactcctaaaaatcaatgaggagatgataaataacccagtag
gaaaatggacaagacatacctgagtagtcacttcacagaaagatggaaca
tgaatgggccaataaatatatgaaaagatgcacaaccttcattaataatc
aaggaaatataaatttcaaacccaccgtgagtcccacttatgcacaataa
ttgattaaatacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102334692_102335792
seq2: B6Ng01-285O17.b_48_1146

seq1  GAATTCCATAAGGATGCAGTAGCAGGGGGCCTGTGTGCAAACACCCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAGGATGCAGTAGCAGGGGGCCTGTGTGCAAACACCCCTGA  50

seq1  GGGCCAGACAGGGGTAAAGCTTAATTATCTGCCTTGTGTACCTGGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGACAGGGGTAAAGCTTAATTATCTGCCTTGTGTACCTGGGACCT  100

seq1  ACATTTCTACCCATGCCATTTCTGGGTCTCCTTTGAGAAAGGGGATATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCTACCCATGCCATTTCTGGGTCTCCTTTGAGAAAGGGGATATAG  150

seq1  TCCCAGGTGAGGGGAGTCCTATGTGTCATGGTACCCCCAGCCCCTGCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTGAGGGGAGTCCTATGTGTCATGGTACCCCCAGCCCCTGCCCT  200

seq1  GGACCTCACTTGAAAGTGATGATGTTGGGGTGCTTCAGCTTTCGAAGATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTCACTTGAAAGTGATGATGTTGGGGTGCTTCAGCTTTCGAAGATG  250

seq1  CTTGATGTCAGTCTCCTTGAGATCTCGAACCTTCTTCACAGCTACCTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGTCAGTCTCCTTGAGATCTCGAACCTTCTTCACAGCTACCTCCT  300

seq1  CCCCGTGGAAGCGTCCCAGGAAAACAGCACCCTGAGCCCCTGAGCCTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTGGAAGCGTCCCAGGAAAACAGCACCCTGAGCCCCTGAGCCTACC  350

seq1  CACTGCAGGTCCAGGATTTCCTCAAAGGGGACTTCCCAAAGGTCTGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCAGGTCCAGGATTTCCTCAAAGGGGACTTCCCAAAGGTCTGTAGG  400

seq1  TAGGAGGCACAGTGCCACAGACTCAGACAGATCTGCACTGAACTTGAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGCACAGTGCCACAGACTCAGACAGATCTGCACTGAACTTGAGAC  450

seq1  ACTCAAGGGTTGGCTGAATATATCAATGATGAGAAAACAAAGTAGGCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGGGTTGGCTGAATATATCAATGATGAGAAAACAAAGTAGGCTGA  500

seq1  AAAGTCTAGTAAAGGAAATACTTGGGTGGTCTTGTGAAAAGCTAGGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTAGTAAAGGAAATACTTGGGTGGTCTTGTGAAAAGCTAGGTGGA  550

seq1  CATAAGGGTGTATATGTGTATATATATATATATACACATATATAAAACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGGTGTATATGTGTATATATATATATATACACATATATAAAACTC  600

seq1  TTTTGTAGAGCACTTGGCTAGGATGTGTAAAACCCAAGTTCCTGGGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAGAGCACTTGGCTAGGATGTGTAAAACCCAAGTTCCTGGGTTCA  650

seq1  GTTTCCTAGCACAATGTGAGAAAATACTGAAGAGCTGAAGATTAAGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCTAGCACAATGTGAGAAAATACTGAAGAGCTGAAGATTAAGTAAA  700

seq1  ACACTTATCTAGCATGTAGTGTTTAATCCTAGCACCAGAAACAAATGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTATCTAGCATGTAGTGTTTAATCCTAGCACCAGAAACAAATGTAA  750

seq1  AGGAAAATAAAGCGGATTAGGAAGGTTTGGTAGGACTGTTGAAGGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATAAAGCGGATTAGGAAGGTTTGGTAGGACTGTTGAAGGAAATG  800

seq1  GAGGGTGTTCTTACAGGGATCTGGCCTACCTTCCTGCTGTTGCTTGTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTTCTTACAGGGATCTGGCCTACCTTCCTGCTGTTGCTTGTGTT  850

seq1  CTGTGGAGTAGGC-TTTGCCAATCATTGTCCAGACAGGGCGCAGGCAGCC  899
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CTGTGGAGTAGGCTTTTGCCAATCATTGTCCAGACAGGGCGCA-GCAGCC  899

seq1  AAAAAGACCTTCAAGGAAGCCACTGCCAC-TCTGGCACTGCAGACGTACC  948
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -AAAAGACCTTCAAGGAAGCCACTGCCACTTCTGGCACTGCAGACGTACC  948

seq1  TCATCAGC-TCGAACTCTAGATGCTCGACTCTCAGGTGACCCAGTGGCTC  997
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TCATCAGCTTCGAACTCTAGATGCTCGACTCTCA-GTGACCCAGTGGCTC  997

seq1  CCCCTGGCCCACCTGTATCCTGCTCATGTAGCTGGAGGACACTATTGGCA  1047
      ||| ||||||||||||||||||||||||||||||||||||||| |  |||
seq2  CCCTTGGCCCACCTGTATCCTGCTCATGTAGCTGGAGGACACT-TATGCA  1046

seq1  AAAGGCTCTGGGGGAGGCTCTCCACCTGGGGAGGGGCTGGGTCCTCCTCC  1097
      |||||||   ||||||||||| |  ||||||| ||||||||||  |||||
seq2  AAAGGCTTCTGGGGAGGCTCTTCCACTGGGGA-GGGCTGGGTCTCCCTCC  1095

seq1  ACCC  1101
      ||||
seq2  ACCC  1099

seq1: chr18_6140016_6140531
seq2: B6Ng01-285O17.g_116_620 (reverse)

seq1  TCAGCTGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTTAATTC  50
      ||||| ||||||||||||||||||||||||  |||||||||||| || ||
seq2  TCAGCGGTTAAGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATC  50

seq1  CTAGCAACCACATGGTG---GC-TCA------------CAAC--CATTTA  82
      | |||| ||| ||||||   || |||            ||||   | |||
seq2  CCAGCATCCATATGGTGAGAGCATCATCTGGTGCCCTGCAACTGGAGTTA  100

seq1  CA-ATGGTATCTGATGCCCTC-------TTCTGGTATGTCTGAAGGCAG-  123
      || ||| | ||||| |||  |       |||||| |   |||||  ||| 
seq2  CAGATGAT-TCTGA-GCCGACAGGTGGATTCTGGAA--ACTGAACTCAGG  146

seq1  ----CTACA--------ATGTACTCATATAAATAAAATAAAATTTCAC-A  160
          |||||        |  | |||   |||  |   || || ||| | |
seq2  TCCTCTACAGGAGCAACAGTTGCTC--TTAACCACTGTACAAATTCTCTA  194

seq1  GACCTTTTTTTTTTTTTTTGGTCTACTAATTAAAGTCAAGAAAAAAATAA  210
      |  | | ||||||||||||  ||      || ||| ||||  | |  |  
seq2  GCTCCTCTTTTTTTTTTTTTTTC------TTTAAGACAAGGTAGAGTTCC  238

seq1  GTTGG---GAAAAACTCCAAGGTAATGT-GTCTCTTTGTGTATCTGTTCT  256
       ||||   | ||| |    | |||   | | ||   ||   | |   || 
seq2  ATTGGCCTGGAAATCATGGA-GTAGGCTAGGCTGGCTGCTCAGCCAGTCC  287

seq1  CTTG--TCTACT---TTGTAAGATCAACTGTTG--TTGATCTGAACTG-T  298
      |  |  ||||||    | ||    | ||| | |  |||   | ||  |  
seq2  CAGGCATCTACTAGCCTCTA----CCACTCTGGCATTGGGATTAAAGGCA  333

seq1  TGTTTCCATGGGTTACACAGATGCCCCATAAGTTATGTTAGCTAAAA--T  346
      || |  |||||      |||     |  |  ||| ||  ||  || |  |
seq2  TGGT--CATGG-----CCAG----GCTTTTGGTTCTG--AGGGAAGAGGT  370

seq1  GTTTCATATTTGA----TTGTGCTT----ATTTCTAAAAGCCACAGTAAC  388
      |  || || || |    || |||||    | |||||  |   ||| |  |
seq2  GGATC-TAGTTCAGGTCTTCTGCTTGCAAAGTTCTACCAATGACACTGCC  419

seq1  TAAAGTAACAGCACTATTTTAATATATATATATATATTATTTATGTTTTC  438
      |       |  || |  |||                 |||   |||||||
seq2  T-------CCCCAGTCCTTT----------------CTAT---TGTTTTC  443

seq1  TTACAAAATATCACTGTTTTTACTCACATTTGTAAATAGCTATATGGAGC  488
      | |   |  |||  | | | ||  | || |         ||     ||| 
seq2  TGAGGCAGGATCTTTCTGTGTA-GCCCAGT---------CTTCCCTGAGA  483

seq1  TCTTTCTAAAATTACATAGCCTGGGCTG  516
       ||       | ||||||||||||||||
seq2  ACT------CACTACATAGCCTGGGCTG  505