BAC Information

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BAC

Clone NameB6Ng01-286N10
Chromosome15 (Build37)
Map Location 18,289,797 - 18,443,934
singlet/doubletdoublet
Overlap geneLOC666839
Upstream geneLOC100040162, LOC666835
Downstream geneCdh10, EG666857, EG666875, LOC621884
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286N10.bB6Ng01-286N10.g
ACCGA084931GA084932
length1,1771,099
definitionB6Ng01-286N10.b B6Ng01-286N10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,442,759 - 18,443,934)(18,289,797 - 18,290,903)
sequence
gaattcagttaaaagattccgttcagagtttgtataagataaacttgtct
ttattgtattgaaaaagaaaagacaataaacacaaccacatagcattcag
gtagcaaaccataggtggtcattgttatgaacaatcacaagaagatctct
caaggcttttaatgtccacatagacatttagaatttacaactacgtaatg
tccattctttaagagaaacacacaatacaagaatttgttgctttgaccac
ccgcagatctaataattgtattcaaatgtatgcttaaaataatgtacaaa
atatttagtgctcccaactaactgtgacgtaaaagggaaaatgcatatat
gagaccgagagattgccagaacagtatgagaacttgagattgaatcctca
gaattcatgtttcaagccaggcatgggaacatatatccatcagaatgttc
atctgtggtgagataggaaatagggcctggagacatctcagaagctcatg
gggcagctagctaagttacagaagcagccaggtagaaacagaaacatgtt
ctcaaacaaggtaagcagcaaggaccaacactacagactgttggtatatt
ttatacacacacacatacacacacacacacacacacacacacactgacac
attttctgtatatgtgtaggtgtgaccctttctgttaactcatttccccc
ccatgaatcttatgtctggaatactggcctctctaccttgcactgtgtgg
gttcccttgattttgtactccatttgggtttgacaaatgtttgacactga
cgaaagagagcatcagttgttagagtgtttatttcctcagacatgactct
attcaggagaaatgacagcattcttttttaccaaacaacattcttcaaac
tcaaacattcttcttattgtaggaaactgctaattctccttgttgtcatt
ggtctactgttgggtattgtttctaatttgtactcctggagttaggactg
acagcttgatgtcagccattaaggagagtcttatattctcataaaaataa
cataccttaccaattagtattttggatgcttctccctcctataccgtaga
agaatattgacattattctgacctgatctgctcaacagaaagtctgtttc
caatccctctcaactgctcattccttt

gaattcttttactttcttgtagaaattcatataaggccaactaacaaggt
caagaaccagaagcttcataagggacttggctagtgcaaagagaattgga
catctctagaaaaaggtggtacatttttctgtcactgtctccatggtcct
ctctctactatgcatcttcacaccttttgctaatcatgtctccagagaca
ctagaaacaacgaatgattattcttatgtcaccgggtctagttcttgatt
gcaaggaagtttcccaactgaatagctgtgcacaaagaaatctatgtgca
tcaacagcctcatttaatttatttcagacaagataaaccagtgggagacc
ctagagaaactgttctggctgctccaatggaccagccaaggctccatggg
gtttgcaatttcccatccggacctcatccatctgcagatcacggcaggat
gggaacccgagagagagaagggctgtctcactgagttaaagacataaaga
cagcataaaatgcagcccaatagaaagaaaagtattctcagaggaagaaa
atattttacaaagacaaagaaatgacctgaagattatggcagaggaactt
gtgctaattgctggagagagaggagagagaatctttggagacaagtaaca
gacgacatgacatctacgacttgccaggtaatcgcatgcccacatggaac
acagcaaagtgactgctagccttttctagtatttgaaaggatagcagcta
tgacaggtacttgggaggaagtacaaaaacaagaaaatagtgtctgtata
tacttctaatattttttctgagtacacaaaatatttcatatcaccattct
gtctaactaaagaaaactggcacatctgaatctgtaaatattgaaagtaa
agggttaatttcaccgaagtgagtaaatgtcatagtcatcaaaaaaaaag
ataaaaaaaaatggagacgtacggaggaccgagtcttcagttattcccaa
cagttccataaatgcaaccaccattctccacatgaacttctaagattgaa
ttgtatatgcaattcggtgatgggtaaacactttcctgtactaattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18442759_18443934
seq2: B6Ng01-286N10.b_50_1226 (reverse)

seq1  AAAGGAATGGAGACAGTTGAGAGAGA-TGGAAACAGACTTTCTGTTGAGG  49
      |||||||| ||| |||||||||| || ||||||||||||||||||||| |
seq2  AAAGGAAT-GAG-CAGTTGAGAGGGATTGGAAACAGACTTTCTGTTGA-G  47

seq1  CAGGATCATGTTCAG-ATATTGTCAATA-TCTCTAACGGTATAGGAGGGA  97
      || ||||| | |||| ||| |||||||| |||   |||||||||||||||
seq2  CA-GATCA-GGTCAGAATAATGTCAATATTCTTCTACGGTATAGGAGGGA  95

seq1  GAAGCATCCCAAAATACTAATTTGTAA-GTATGTTA-TTTTATGAG-ATA  144
      ||||||| |||||||||||||| |||| |||||||| ||||||||| |||
seq2  GAAGCAT-CCAAAATACTAATTGGTAAGGTATGTTATTTTTATGAGAATA  144

seq1  TAAGACTCTCC-TAATGGCTGACATCAAGCTGTCAGTCCTAACTCCAGGA  193
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTCTCCTTAATGGCTGACATCAAGCTGTCAGTCCTAACTCCAGGA  194

seq1  GTACAAATTAGAAAACAATACCCAACAGTAGACCAATGACAACAAGGAGA  243
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATTAG-AAACAATACCCAACAGTAGACCAATGACAACAAGGAGA  243

seq1  ATTAGCAGTTTCCTACAATAAGAAGAATGTTTGAGTTTGAAGAATGTTGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCAGTTTCCTACAATAAGAAGAATGTTTGAGTTTGAAGAATGTTGT  293

seq1  TTGGT-AAAAAGAATGCTGTCATTTCTCCTGAATAGAGTCATGTCTGAGG  342
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAAAAAGAATGCTGTCATTTCTCCTGAATAGAGTCATGTCTGAGG  343

seq1  AAATAAACACTCTAACAACTGATGCTCTCTTTCGTCAGTGTCAAACATTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACACTCTAACAACTGATGCTCTCTTTCGTCAGTGTCAAACATTT  393

seq1  GTCAAACCCAAATGGAGTACAAAATCAAGGGAACCCACACAGTGCAAGGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACCCAAATGGAGTACAAAATCAAGGGAACCCACACAGTGCAAGGT  443

seq1  AGAGAGGCCAGTATTCCAGACATAAGATTCATGGGGGGGAAATGAGTTAA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGCCAGTATTCCAGACATAAGATTCATGGGGGGGAAATGAGTTAA  493

seq1  CAGAAAGGGTCACACCTACACATATACAGAAAATGTGTCAGTGTGTGTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGGTCACACCTACACATATACAGAAAATGTGTCAGTGTGTGTGT  543

seq1  GTGTGTGTGTGTGTGTGTATGTGTGTGTGTATAAAATATACCAACAGTCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTATGTGTGTGTGTATAAAATATACCAACAGTCT  593

seq1  GTAGTGTTGGTCCTTGCTGCTTACCTTGTTTGAGAACATGTTTCTGTTTC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGTTGGTCCTTGCTGCTTACCTTGTTTGAGAACATGTTTCTGTTTC  643

seq1  TACCTGGCTGCTTCTGTAACTTAGCTAGCTGCCCCATGAGCTTCTGAGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGCTGCTTCTGTAACTTAGCTAGCTGCCCCATGAGCTTCTGAGAT  693

seq1  GTCTCCAGGCCCTATTTCCTATCTCACCACAGATGAACATTCTGATGGAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCAGGCCCTATTTCCTATCTCACCACAGATGAACATTCTGATGGAT  743

seq1  ATATGTTCCCATGCCTGGCTTGAAACATGAATTCTGAGGATTCAATCTCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCCCATGCCTGGCTTGAAACATGAATTCTGAGGATTCAATCTCA  793

seq1  AGTTCTCATACTGTTCTGGCAATCTCTCGGTCTCATATATGCATTTTCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATACTGTTCTGGCAATCTCTCGGTCTCATATATGCATTTTCCC  843

seq1  TTTTACGTCACAGTTAGTTGGGAGCACTAAATATTTTGTACATTATTTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACGTCACAGTTAGTTGGGAGCACTAAATATTTTGTACATTATTTTA  893

seq1  AGCATACATTTGAATACAATTATTAGATCTGCGGGTGGTCAAAGCAACAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATACATTTGAATACAATTATTAGATCTGCGGGTGGTCAAAGCAACAA  943

seq1  ATTCTTGTATTGTGTGTTTCTCTTAAAGAATGGACATTACGTAGTTGTAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGTATTGTGTGTTTCTCTTAAAGAATGGACATTACGTAGTTGTAA  993

seq1  ATTCTAAATGTCTATGTGGACATTAAAAGCCTTGAGAGATCTTCTTGTGA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAATGTCTATGTGGACATTAAAAGCCTTGAGAGATCTTCTTGTGA  1043

seq1  TTGTTCATAACAATGACCACCTATGGTTTGCTACCTGAATGCTATGTGGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATAACAATGACCACCTATGGTTTGCTACCTGAATGCTATGTGGT  1093

seq1  TGTGTTTATTGTCTTTTCTTTTTCAATACAATAAAGACAAGTTTATCTTA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTATTGTCTTTTCTTTTTCAATACAATAAAGACAAGTTTATCTTA  1143

seq1  TACAAACTCTGAACGGAATCTTTTAACTGAATTC  1176
      ||||||||||||||||||||||||||||||||||
seq2  TACAAACTCTGAACGGAATCTTTTAACTGAATTC  1177


seq1: chr15_18289797_18290903
seq2: B6Ng01-286N10.g_69_1167

seq1  GAATTCTTTTACTTTCTTGTAGAAATTCATATAAGGCCAACTAACAAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTACTTTCTTGTAGAAATTCATATAAGGCCAACTAACAAGGT  50

seq1  CAAGAACCAGAAGCTTCATAAGGGACTTGGCTAGTGCAAAGAGAATTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCAGAAGCTTCATAAGGGACTTGGCTAGTGCAAAGAGAATTGGA  100

seq1  CATCTCTAGAAAAAGGTGGTACATTTTTCTGTCACTGTCTCCATGGTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTAGAAAAAGGTGGTACATTTTTCTGTCACTGTCTCCATGGTCCT  150

seq1  CTCTCTACTATGCATCTTCACACCTTTTGCTAATCATGTCTCCAGAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACTATGCATCTTCACACCTTTTGCTAATCATGTCTCCAGAGACA  200

seq1  CTAGAAACAACGAATGATTATTCTTATGTCACCGGGTCTAGTTCTTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACAACGAATGATTATTCTTATGTCACCGGGTCTAGTTCTTGATT  250

seq1  GCAAGGAAGTTTCCCAACTGAATAGCTGTGCACAAAGAAATCTATGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAAGTTTCCCAACTGAATAGCTGTGCACAAAGAAATCTATGTGCA  300

seq1  TCAACAGCCTCATTTAATTTATTTCAGACAAGATAAACCAGTGGGAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGCCTCATTTAATTTATTTCAGACAAGATAAACCAGTGGGAGACC  350

seq1  CTAGAGAAACTGTTCTGGCTGCTCCAATGGACCAGCCAAGGCTCCATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAACTGTTCTGGCTGCTCCAATGGACCAGCCAAGGCTCCATGGG  400

seq1  GTTTGCAATTTCCCATCCGGACCTCATCCATCTGCAGATCACGGCAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCAATTTCCCATCCGGACCTCATCCATCTGCAGATCACGGCAGGAT  450

seq1  GGGAACCCGAGAGAGAGAAGGGCTGTCTCACTGAGTTAAAGACATAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCCGAGAGAGAGAAGGGCTGTCTCACTGAGTTAAAGACATAAAGA  500

seq1  CAGCATAAAATGCAGCCCAATAGAAAGAAAAGTATTCTCAGAGGAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAAATGCAGCCCAATAGAAAGAAAAGTATTCTCAGAGGAAGAAA  550

seq1  ATATTTTACAAAGACAAAGAAATGACCTGAAGATTATGGCAGAGGAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTACAAAGACAAAGAAATGACCTGAAGATTATGGCAGAGGAACTT  600

seq1  GTGCTAATTGCTGGAGAGAGAGGAGAGAGAATCTTTGGAGACAAGTAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAATTGCTGGAGAGAGAGGAGAGAGAATCTTTGGAGACAAGTAACA  650

seq1  GACGACATGACATCTACGACTTGCCAGGTAATCGCATGCCCACATGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGACATGACATCTACGACTTGCCAGGTAATCGCATGCCCACATGGAAC  700

seq1  ACAGCAAAGTGACTGCTAGCCTTTTCTAGTATTTGAAAGGATAGCAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAAGTGACTGCTAGCCTTTTCTAGTATTTGAAAGGATAGCAGCTA  750

seq1  TGACAGGTACTTGGGAGGAAGTACAAAAACAAGAAAATAGTGTCTGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGTACTTGGGAGGAAGTACAAAAACAAGAAAATAGTGTCTGTATA  800

seq1  TACTTCTAATATTTTTTCTGAGTACACAAAATATTTCATATCACCATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTAATATTTTTTCTGAGTACACAAAATATTTCATATCACCATTCT  850

seq1  GTCTAACTAAAGAAAACTGGCACATCTGAATCTGTAAATATTGAAAGTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACTAAAGAAAACTGGCACATCTGAATCTGTAAATATTGAAAGTAA  900

seq1  A-GGTTAAATTCACCGAAGTGAGTAAATGTCATAGTCATCAAAAAAAAAA  949
      | |||||| |||||||||||||||||||||||||||||||     |||||
seq2  AGGGTTAATTTCACCGAAGTGAGTAAATGTCATAGTCATC-----AAAAA  945

seq1  AAAAAAAAAAAAAAAAAGGAGACGTAACGGAAGACCGAGTCTTCAGTTAA  999
      |||| | ||||||||| |||||||| ||||| |||||||||||||||| |
seq2  AAAAGATAAAAAAAAATGGAGACGT-ACGGAGGACCGAGTCTTCAGTT-A  993

seq1  TTCCAAACAGTTCCATAAATGCAAACCACCATCTTCAACATGGAAACTCT  1049
      |||| ||||||||||||||||| |||||||||  || |||| |||  |||
seq2  TTCCCAACAGTTCCATAAATGC-AACCACCATTCTCCACAT-GAACTTCT  1041

seq1  AAGAATTGAATTGTATATGCAA-TCGTAGATGGTAAAACACTTTCCTGTA  1098
      ||| |||||||||||||||||| |||  |||||  |||||||||||||||
seq2  AAG-ATTGAATTGTATATGCAATTCGGTGATGGGTAAACACTTTCCTGTA  1090

seq1  ACTATTTTC  1107
         ||||||
seq2  CTAATTTTC  1099


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