BAC Information

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BAC

Clone NameB6Ng01-287I09
Chromosome15 (Build37)
Map Location 100,070,754 - 100,214,284
singlet/doubletdoublet
Overlap geneAtf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4
Upstream geneKcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b
Downstream geneSlc11a2, EG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287I09.bB6Ng01-287I09.g
ACCGA085424GA085425
length1,0371,150
definitionB6Ng01-287I09.b B6Ng01-287I09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,070,754 - 100,071,798)(100,213,135 - 100,214,284)
sequence
gaattctttctttctttctttcctttgttgctgttttttttttggttttt
ttttggttttttttttttttgagacaaggtttttctgtgtagccttggct
gtccaaccttacctagaattattatttaacatcacccattttgttctttt
taaatagttgttacctggagtcagcttgcccatttggcagaagtatgctt
ttctcaagaagagaaccgggaaatttatgttagccaggacttcacattgg
ttatgatctatgttgctttcgcttgagctgcccattagaggcaggttctt
tgggatgggcctaatgcttggtcagtcctgatgaacaagcatgtacaccc
tagatcatagactctgtgcctctcggggcttggttagcatacttactgct
catctttgtggtattttggagacagtgcgccacttggctcagttctactc
cacatggtttaacatctcttaggaagtcctttccggcaccagctctcctc
tacatcaagtgtaagtgtttggtaatcggtgtctgatggtggcagtctcc
cttctgggtctgattctgctgcctagtcttctgcttctcattctaggtgc
gttattgcttactggccattaagctttaaaaacaactgttgggaattgtt
tagttccagggagataactgtatttctagaagctgctcactatacagata
ggcttagaaagagtctagaacaagagttgtcattgattgctcaaaactgg
gagtcaagtctgtctccttggctctgctttggcctctcgtagtcctcaca
tgctttctccatgactgaaaacaagatgattttattctgcgtctctcctt
ccccactagccccagtatgttctttgaaactttttttttaaaggtttcct
tttcagacatttttaagcagtggtcagtgccatacagtgaaacgtgtata
tgtaacttttttttttgtgtttttgttgcttattttcgagaacagggttt
ctgggtagctttggctgtcccggcactcactttgtat
gaattcctttttctgatgctagcactgaaggagccggccgtccttgcttc
cagcttctggctttactttttgggtacattgaagaaccgaggtctgatat
agtccttatacatagagtagagaacacctggagaagaaagtcacccacaa
tcagtagtgtccgtgagaagcaaacactgacattttcccacacacttttc
caaaacgagcacactattgcaaaagaaaaggacaaacaaaactcagtaag
caaggctccgctcacccagcggctgcagaatcaaataacacttaagtatt
ttggatcagcatcgacgcaggcatatgcacatgtgcacacacaaacccaa
actcataaaaacacaaattctgtaaaaaaaaacataaatttaaaagacaa
taatactttgaacttaagctgtcataacaccatccccaaattaaagtttt
tgttttgtttgttttcttgagtcaagtgtttctctgtgtagccctgaatg
tcctagaactcaccacatagaccaggctggctttgaactatagaggtctg
cctgcctctgccttccaagtgctgggattaaaagtgtgtgccaccagggc
cggctgaactcatgttggctgaagtcggtgacacatggcagcagtggtag
cagtcggtgcgcagaggcagggggatcgaaagttcatcccggtgtttggc
tacactgtgggcggaggccagtctgagctgcatgaaatcttgcctcaaca
acagaaccaatcttgggaaaagctaggcaagtttggtcaaacacaagtat
cttagttagccagtcacgaattcagcacctgcctgtgctcagcaccccag
ggaatatgcatgactgatggaaccctgctctggggattagaagcagcagg
tgaatttagctctgagatgaggcagatgacgccagcagtccgagggctgg
tgtgaagctttcgagacttcttggcgatgattccgaaaggaagaagtcag
tatcagatgtaggttcctctggctcctcttccttgtcaggcatggtacct
agttgttcttaggatcgtcacttctcccaagaactgcccactgtgtcttc
ttgtgcacagaagaataaggcttcaatgaattcttcttgtagcacggcag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100070754_100071798
seq2: B6Ng01-287I09.b_45_1081

seq1  GAATTCTTTCTTTCTTTCTTTCCTTTGTTGCTGTTTTTTTTTTGGTTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTTCTTTCTTTCCTTTGTTGCTGTTTTTTTTTTGGTTTTT  50

seq1  TTTTGGTTTTTTTTTTTTTTGAGACAAGGTTTTTCTGTGTAGCCTTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTTTTTTTTTTTGAGACAAGGTTTTTCTGTGTAGCCTTGGCT  100

seq1  GTCCAACCTTACCTAGAATTATTATTTAACATCACCCATTTTGTTCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAACCTTACCTAGAATTATTATTTAACATCACCCATTTTGTTCTTTT  150

seq1  TAAATAGTTGTTACCTGGAGTCAGCTTGCCCATTTGGCAGAAGTATGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGTTGTTACCTGGAGTCAGCTTGCCCATTTGGCAGAAGTATGCTT  200

seq1  TTCTCAAGAAGAGAACCGGGAAATTTATGTTAGCCAGGACTTCACATTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGAAGAGAACCGGGAAATTTATGTTAGCCAGGACTTCACATTGG  250

seq1  TTATGATCTATGTTGCTTTCGCTTGAGCTGCCCATTAGAGGCAGGTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATCTATGTTGCTTTCGCTTGAGCTGCCCATTAGAGGCAGGTTCTT  300

seq1  TGGGATGGGCCTAATGCTTGGTCAGTCCTGATGAACAAGCATGTACACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGGCCTAATGCTTGGTCAGTCCTGATGAACAAGCATGTACACCC  350

seq1  TAGATCATAGACTCTGTGCCTCTCGGGGCTTGGTTAGCATACTTACTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCATAGACTCTGTGCCTCTCGGGGCTTGGTTAGCATACTTACTGCT  400

seq1  CATCTTTGTGGTATTTTGGAGACAGTGCGCCACTTGGCTCAGTTCTACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTGTGGTATTTTGGAGACAGTGCGCCACTTGGCTCAGTTCTACTC  450

seq1  CACATGGTTTAACATCTCTTAGGAAGTCCTTTCCGGCACCAGCTCTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTTTAACATCTCTTAGGAAGTCCTTTCCGGCACCAGCTCTCCTC  500

seq1  TACATCAAGTGTAAGTGTTTGGTAATCGGTGTCTGATGGTGGCAGTCTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCAAGTGTAAGTGTTTGGTAATCGGTGTCTGATGGTGGCAGTCTCC  550

seq1  CTTCTGGGTCTGATTCTGCTGCCTAGTCTTCTGCTTCTCATTCTAGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGGTCTGATTCTGCTGCCTAGTCTTCTGCTTCTCATTCTAGGTGC  600

seq1  GTTATTGCTTACTGGCCATTAAGCTTTAAAAACAACTGTTGGGAATTGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTTACTGGCCATTAAGCTTTAAAAACAACTGTTGGGAATTGTT  650

seq1  TAGTTCCAGGGAGATAACTGTATTTCTAGAAGCTGCTCACTATACAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCCAGGGAGATAACTGTATTTCTAGAAGCTGCTCACTATACAGATA  700

seq1  GGCTTAGAAAGAGTCTAGAACAAGAGTTGTCATTGATTGCTCAAAACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAGAAAGAGTCTAGAACAAGAGTTGTCATTGATTGCTCAAAACTGG  750

seq1  GAGTCAAGTCTGTCTCCTTGGCTCTGCTTTGGCCTCTCGTAGTCCTCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAAGTCTGTCTCCTTGGCTCTGCTTTGGCCTCTCGTAGTCCTCACA  800

seq1  TGCTTTCTCCATGACTGAAAACAAGATGATTTTATTCTGCGTCTCTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCTCCATGACTGAAAACAAGATGATTTTATTCTGCGTCTCTCCTT  850

seq1  CCCCACTAGCCCCCAGTATGTTCTTTGAAACTTTTTTTTTAAAGGTTTCC  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACTAG-CCCCAGTATGTTCTTTGAAACTTTTTTTTTAAAGGTTTCC  899

seq1  TTTTCAGACAATTTTTAAGCAGGTGTCAGTGCCATACAGTGAAACGTGTA  950
      ||||||||| ||||||||||||  ||||||||||||||||||||||||||
seq2  TTTTCAGAC-ATTTTTAAGCAGTGGTCAGTGCCATACAGTGAAACGTGTA  948

seq1  TATGTAACTTTTTTTTTTGTTGTTTTTTTGTTTTGTTTTATTTTTCGAG-  999
      ||||||||||||||||||||  |||| ||| ||        |||||||| 
seq2  TATGTAACTTTTTTTTTTGTGTTTTTGTTGCTT-------ATTTTCGAGA  991

seq1  ACAGGGTTTCTGTGTAGCTTTGGCTGTCCCGGCACTCACTTTGTAT  1045
      |||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAGGGTTTCTGGGTAGCTTTGGCTGTCCCGGCACTCACTTTGTAT  1037

seq1: chr15_100213135_100214284
seq2: B6Ng01-287I09.g_64_1213 (reverse)

seq1  CTGCGGTGCTACAAGAAGAATCCA-TGGAGCCTTTATCTTCTGTGCACAG  49
      |||| |||||||||||||||| || || ||||||  ||||||||||||| 
seq2  CTGCCGTGCTACAAGAAGAATTCATTGAAGCCTTATTCTTCTGTGCACAA  50

seq1  AAAGACCACAGTGGGCAG-TCTTGGGAGAAGTGAACGAT-CTA--GACAA  95
       |||| |||||||||||| |||||||||||||| ||||| |||   ||||
seq2  GAAGA-CACAGTGGGCAGTTCTTGGGAGAAGTG-ACGATCCTAAGAACAA  98

seq1  CTAGGTACCCATGCCTTGACAAGGGAGAGAGGCCAGAGGGAAACTACATC  145
      ||||||| ||||||| |||||||| ||||  |||||| |||| |||||||
seq2  CTAGGTA-CCATGCC-TGACAAGGAAGAGGAGCCAGA-GGAACCTACATC  145

seq1  TGATACTTGAC-TCTTCCTTTCGGAATTCATCGCCAAGAATTCTCGGAAG  194
      |||||| |||| |||||||||||||| ||||||||||||| ||||| |||
seq2  TGATAC-TGACTTCTTCCTTTCGGAA-TCATCGCCAAGAAGTCTCGAAAG  193

seq1  CTTCAACACAGCCCTCGGACTGCTGGCGTCATCTGCCTCATCTCAGAGCT  244
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACACCAGCCCTCGGACTGCTGGCGTCATCTGCCTCATCTCAGAGCT  243

seq1  -AATTCACCTGCTGCTTCTAATCCCCAGAGCAGGGTTCCATCAGTCATGC  293
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACCTGCTGCTTCTAATCCCCAGAGCAGGGTTCCATCAGTCATGC  293

seq1  ATATTCCCTGGGGTGCTGAGCACAGGCAGGTGCTGAATTCGTGACTGGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCCTGGGGTGCTGAGCACAGGCAGGTGCTGAATTCGTGACTGGCT  343

seq1  AACTAAGATACTTGTGTTTGACCAAACTTGCCTAGCTTTTCCCAAGATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGATACTTGTGTTTGACCAAACTTGCCTAGCTTTTCCCAAGATTG  393

seq1  GTTCTGTTGTTGAGGCAAGATTTCATGCAGCTCAGACTGGCCTCCGCCCA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTGTTGAGGCAAGATTTCATGCAGCTCAGACTGGCCTCCGCCCA  443

seq1  CAGTGTAGCCAAACACCGGGATGAACTTTCGATCCCCCTGCCTCTGCGCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGCCAAACACCGGGATGAACTTTCGATCCCCCTGCCTCTGCGCA  493

seq1  CCGACTGCTACCACTGCTGCCATGTGTCACCGACTTCAGCCAACATGAGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTGCTACCACTGCTGCCATGTGTCACCGACTTCAGCCAACATGAGT  543

seq1  TCAGCCGGCCCTGGTGGCACACACTTTTAATCCCAGCACTTGGAAGGCAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCGGCCCTGGTGGCACACACTTTTAATCCCAGCACTTGGAAGGCAG  593

seq1  AGGCAGGCAGACCTCTATAGTTCAAAGCCAGCCTGGTCTATGTGGTGAGT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGACCTCTATAGTTCAAAGCCAGCCTGGTCTATGTGGTGAGT  643

seq1  TCTAGGACATTCAGGGCTACACAGAGAAACACTTGACTCAAGAAAACAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGACATTCAGGGCTACACAGAGAAACACTTGACTCAAGAAAACAAA  693

seq1  CAAAACAAAAACTTTAATTTGGGGATGGTGTTATGACAGCTTAAGTTCAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACAAAAACTTTAATTTGGGGATGGTGTTATGACAGCTTAAGTTCAA  743

seq1  AGTATTATTGTCTTTTAAATTTATGTTTTTTTTTACAGAATTTGTGTTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTATTGTCTTTTAAATTTATGTTTTTTTTTACAGAATTTGTGTTTT  793

seq1  TATGAGTTTGGGTTTGTGTGTGCACATGTGCATATGCCTGCGTCGATGCT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTGGGTTTGTGTGTGCACATGTGCATATGCCTGCGTCGATGCT  843

seq1  GATCCAAAATACTTAAGTGTTATTTGATTCTGCAGCCGCTGGGTGAGCGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCAAAATACTTAAGTGTTATTTGATTCTGCAGCCGCTGGGTGAGCGG  893

seq1  AGCCTTGCTTACTGAGTTTTGTTTGTCCTTTTCTTTTGCAATAGTGTGCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGCTTACTGAGTTTTGTTTGTCCTTTTCTTTTGCAATAGTGTGCT  943

seq1  CGTTTTGGAAAAGTGTGTGGGAAAATGTCAGTGTTTGCTTCTCACGGACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTGGAAAAGTGTGTGGGAAAATGTCAGTGTTTGCTTCTCACGGACA  993

seq1  CTACTGATTGTGGGTGACTTTCTTCTCCAGGTGTTCTCTACTCTATGTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATTGTGGGTGACTTTCTTCTCCAGGTGTTCTCTACTCTATGTAT  1043

seq1  AAGGACTATATCAGACCTCGGTTCTTCAATGTACCCAAAAAGTAAAGCCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTATATCAGACCTCGGTTCTTCAATGTACCCAAAAAGTAAAGCCA  1093

seq1  GAAGCTGGAAGCAAGGACGGCCGGCTCCTTCAGTGCTAGCATCAGAAAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGAAGCAAGGACGGCCGGCTCCTTCAGTGCTAGCATCAGAAAAA  1143

seq1  GGAATTC  1150
      |||||||
seq2  GGAATTC  1150