BAC Information

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BAC

Clone NameB6Ng01-287I14
Chromosome15 (Build37)
Map Location 33,485,130 - 33,522,529
singlet/doubletdoublet
Overlap genePgcp
Upstream geneSema5a, LOC100040962, Sdc2, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287I14.bB6Ng01-287I14.g
ACCGA085434GA085435
length8741,174
definitionB6Ng01-287I14.b B6Ng01-287I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,521,657 - 33,522,529)(33,485,130 - 33,486,338)
sequence
gaattctcatggaagaatgttaatgaaaataaccaccctttcctgtgcaa
agggcagggtgcatttaaaaaaaaaaaaaaaaaaaaaaaggagtttcctt
acaccacaagcccatggcatacccaggaaagtcaagtgtgcacgttttct
ctagtggtactgtgtcttcataaaactgtgacattttagaattgtttggt
agggagcacacacttcctagattccagatagaaccaagtgaatgtcgaag
tcacacacagatacacacacacagaggacagagtcaagaagttcatagaa
tggagtggatggaggatggatgaggatacagagaggggtgtttaatccca
gcagagtatgatcaattggggctggtttgattacatacaggccatcttaa
gaatactgcaagttagctgatagaagagggactcaaattccctattggaa
aaacaaaggcaagacatattgtgatgtcctttacaggtttccaaaattac
ctctgtgtctcggatttaaggaatctggctgccaaatgagtgatgtctgg
gtgccttcctttagagcctgtgacttaaggaaggtcacatttccttctat
atcatctaggttcccatgacattatgcaaaataaaaacaaccaagaaatt
tgcttatcaccaccaaggagctattaaaaagcccattgacagccctggag
ctttgtctctgtaattctactcaggcactttatcattgacagctattgat
ctaaaaggaccagcactgagggagctcctgcattcaatttcagagaaatg
tgggggactgctagcttattcctagggagaattgcatggtatccttttga
caggtgtatgaactctgacagcga
gaattccttaaggctgcctgccaatcagtgggaatgtctgttgtggatgc
taattcagactttgaagagccagccagattcattactgaggttggccagc
atgtaatggcagcagaatttactgatgcatatttaaactgaatctttata
accaaggtcttcagtaaacagtcaccagctgcaaatgaaaattataataa
ggccttccgtagagaatgtctctaaggagagtttgaaactctatgcactg
cttttctcaaacatcatttggtcatttgtggttgtcaacattgtgaggct
ttagcagtcattccatcatgaggctattgggtccttgtggtatttataat
tttctgctggatgaggagaattgttgacccgtagtataactgaagtccct
tgacagaaagatcaaatccatccacttacagaggacttgggtttcaatgg
ggtccacagaaacgaatgcactcaaaccatggaaatccaagtaggtcacc
aggcagcccaagtttagtcttcatcaaaggcaggtgagactggaggtctg
agagaattctcaatgaccacaagtcctgagtgtagaagtcagcactatca
tgctaacctgctatggaccccatgctggccaccactattctgttgaaact
ggtaatcacctatagcttatactgtgctctctatagcacagcctctgtgc
agcccttttaagtgctttccctaatgattacaactaaatgcctgtgctgt
catgtgtttcttaaatggtagataatacaatttaccagtgagtgtgagaa
gtaccactaatcatccaaactgatatatttccctttataatgatatgtat
acactgatatttcatacagatgggtctggttttctacagtcaagagttgg
gtgtctcaaggaagctggaaaccactctttgtttggtttgtttgtacccc
agacccttcccattttcctagtgcccattcaggataggatcacctccagg
tggtgcatagttatcagatgcatcatcagcaaatatttactacctagtat
atgacgtcacagtgctggacgttttgattaggtcagatactgtgtccagg
aatccctcagtgcaggagcagcctgatgaccattacctactgttctgaaa
gaaggaattctagaaatcatggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_33521657_33522529
seq2: B6Ng01-287I14.b_42_915 (reverse)

seq1  TCGCTGTTCAGAGTTCATACACCTGTCAAAA-GATACCATGCAATTCTCC  49
      |||||| |||||||||||||||||||||||| ||||||||||||||||||
seq2  TCGCTG-TCAGAGTTCATACACCTGTCAAAAGGATACCATGCAATTCTCC  49

seq1  CTAGGAAT-AGCTAGCATTCCCCCACATTTCTCTGAAATTGAAATGCAGG  98
      |||||||| |||||||| ||||||||||||||||||||||| ||||||||
seq2  CTAGGAATAAGCTAGCAGTCCCCCACATTTCTCTGAAATTG-AATGCAGG  98

seq1  AGCTCCCTCAGTGCTGGTCC-TTTAGATCAATAGCTGTCAATGATAAAGT  147
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGCTCCCTCAGTGCTGGTCCTTTTAGATCAATAGCTGTCAATGATAAAGT  148

seq1  GCCTGAGTAGAATTACAGAGACAAAGCTCCAGGGCTGTCAATGGGCTTTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTAGAATTACAGAGACAAAGCTCCAGGGCTGTCAATGGGCTTTT  198

seq1  TAATAGCTCCTTGGTGGTGATAAGCAAATTTCTTGGTTGTTTTTATTTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTCCTTGGTGGTGATAAGCAAATTTCTTGGTTGTTTTTATTTTG  248

seq1  CATAATGTCATGGGAACCTAGATGATATAGAAGGAAATGTGACCTTCCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGTCATGGGAACCTAGATGATATAGAAGGAAATGTGACCTTCCTT  298

seq1  AAGTCACAGGCTCTAAAGGAAGGCACCCAGACATCACTCATTTGGCAGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAGGCTCTAAAGGAAGGCACCCAGACATCACTCATTTGGCAGCC  348

seq1  AGATTCCTTAAATCCGAGACACAGAGGTAATTTTGGAAACCTGTAAAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTTAAATCCGAGACACAGAGGTAATTTTGGAAACCTGTAAAGGA  398

seq1  CATCACAATATGTCTTGCCTTTGTTTTTCCAATAGGGAATTTGAGTCCCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAATATGTCTTGCCTTTGTTTTTCCAATAGGGAATTTGAGTCCCT  448

seq1  CTTCTATCAGCTAACTTGCAGTATTCTTAAGATGGCCTGTATGTAATCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATCAGCTAACTTGCAGTATTCTTAAGATGGCCTGTATGTAATCAA  498

seq1  ACCAGCCCCAATTGATCATACTCTGCTGGGATTAAACACCCCTCTCTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCCAATTGATCATACTCTGCTGGGATTAAACACCCCTCTCTGTA  548

seq1  TCCTCATCCATCCTCCATCCACTCCATTCTATGAACTTCTTGACTCTGTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCCATCCTCCATCCACTCCATTCTATGAACTTCTTGACTCTGTC  598

seq1  CTCTGTGTGTGTGTATCTGTGTGTGACTTCGACATTCACTTGGTTCTATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTGTGTATCTGTGTGTGACTTCGACATTCACTTGGTTCTATC  648

seq1  TGGAATCTAGGAAGTGTGTGCTCCCTACCAAACAATTCTAAAATGTCACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTAGGAAGTGTGTGCTCCCTACCAAACAATTCTAAAATGTCACA  698

seq1  GTTTTATGAAGACACAGTACCACTAGAGAAAACGTGCACACTTGACTTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATGAAGACACAGTACCACTAGAGAAAACGTGCACACTTGACTTTC  748

seq1  CTGGGTATGCCATGGGCTTGTGGTGTAAGGAAACTCCTTTTTTTTTTTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTATGCCATGGGCTTGTGGTGTAAGGAAACTCCTTTTTTTTTTTTT  798

seq1  TTTTTTTTTTAAATGCACCCTGCCCTTTGCACAGGAAAGGGTGGTTATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTAAATGCACCCTGCCCTTTGCACAGGAAAGGGTGGTTATTT  848

seq1  TCATTAACATTCTTCCATGAGAATTC  873
      ||||||||||||||||||||||||||
seq2  TCATTAACATTCTTCCATGAGAATTC  874

seq1: chr15_33485130_33486338
seq2: B6Ng01-287I14.g_65_1237

seq1  GAATTCCTTAAGGCTGCCTGCCAATCAGTGGGAATGTCTGTTGTGGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGGCTGCCTGCCAATCAGTGGGAATGTCTGTTGTGGATGC  50

seq1  TAATTCAGACTTTGAAGAGCCAGCCAGATTCATTACTGAGGTTGGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCAGACTTTGAAGAGCCAGCCAGATTCATTACTGAGGTTGGCCAGC  100

seq1  ATGTAATGGCAGCAGAATTTACTGATGCATATTTAAACTGAATCTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAATGGCAGCAGAATTTACTGATGCATATTTAAACTGAATCTTTATA  150

seq1  ACCAAGGTCTTCAGTAAACAGTCACCAGCTGCAAATGAAAATTATAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGTCTTCAGTAAACAGTCACCAGCTGCAAATGAAAATTATAATAA  200

seq1  GGCCTTCCGTAGAGAATGTCTCTAAGGAGAGTTTGAAACTCTATGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTCCGTAGAGAATGTCTCTAAGGAGAGTTTGAAACTCTATGCACTG  250

seq1  CTTTTCTCAAACATCATTTGGTCATTTGTGGTTGTCAACATTGTGAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCAAACATCATTTGGTCATTTGTGGTTGTCAACATTGTGAGGCT  300

seq1  TTAGCAGTCATTCCATCATGAGGCTATTGGGTCCTTGTGGTATTTATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGTCATTCCATCATGAGGCTATTGGGTCCTTGTGGTATTTATAAT  350

seq1  TTTCTGCTGGATGAGGAGAATTGTTGACCCGTAGTATAACTGAAGTCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTGGATGAGGAGAATTGTTGACCCGTAGTATAACTGAAGTCCCT  400

seq1  TGACAGAAAGATCAAATCCATCCACTTACAGAGGACTTGGGTTTCAATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAAGATCAAATCCATCCACTTACAGAGGACTTGGGTTTCAATGG  450

seq1  GGTCCACAGAAACGAATGCACTCAAACCATGGAAATCCAAGTAGGTCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCACAGAAACGAATGCACTCAAACCATGGAAATCCAAGTAGGTCACC  500

seq1  AGGCAGCCCAAGTTTAGTCTTCATCAAAGGCAGGTGAGACTGGAGGTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCCAAGTTTAGTCTTCATCAAAGGCAGGTGAGACTGGAGGTCTG  550

seq1  AGAGAATTCTCAATGACCACAAGTCCTGAGTGTAGAAGTCAGCACTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCTCAATGACCACAAGTCCTGAGTGTAGAAGTCAGCACTATCA  600

seq1  TGCTAACCTGCTATGGACCCCATGCTGGCCACCACTATTCTGTTGAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACCTGCTATGGACCCCATGCTGGCCACCACTATTCTGTTGAAACT  650

seq1  GGTAATCACCTATAGCTTATACTGTGCTCTCTATAGCACAGCCTCTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATCACCTATAGCTTATACTGTGCTCTCTATAGCACAGCCTCTGTGC  700

seq1  AGCCCTTTTAAGTGCTTTCCCTAATGATTACAACTAAATGCCTGTGCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTTTAAGTGCTTTCCCTAATGATTACAACTAAATGCCTGTGCTGT  750

seq1  CATGTGTTTCTTAAATGGTAGATAATACAATTTACCAGTGAGTGTGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTTCTTAAATGGTAGATAATACAATTTACCAGTGAGTGTGAGAA  800

seq1  GTACCACTAATCATCCAAACTGATATATTTCCCTTTATAATGATATGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCACTAATCATCCAAACTGATATATTTCCCTTTATAATGATATGTAT  850

seq1  ACACTGATATTTCATACAGATGGGTCTGGTTTTCTACAGTCAAGAGTTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGATATTTCATACAGATGGGTCTGGTTTTCTACAGTCAAGAGTTGG  900

seq1  GTGTCTCAAGGAAGCTGGAAACCACTCTTTGTTTGGTTTGTTTGTTACCC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GTGTCTCAAGGAAGCTGGAAACCACTCTTTGTTTGGTTTGTTTG-TACCC  949

seq1  CAGACCCTTCCCCATTTTCCTAGTGCCCATTCCAGATAGGAATCACCTCC  1000
      ||||||||| ||||||||||||||||||||||  |||||| |||||||||
seq2  CAGACCCTT-CCCATTTTCCTAGTGCCCATTCAGGATAGG-ATCACCTCC  997

seq1  A-GTGGTGCATAGTTATCAGGAATGGCCAATCATCCAGCAAATATTTACT  1049
      | ||||||||||||||||||  |||    ||||| |||||||||||||||
seq2  AGGTGGTGCATAGTTATCAG--ATG---CATCAT-CAGCAAATATTTACT  1041

seq1  AACTAGTTAATATGAACCGTCACAGTTGCCTGGGACGTTTTTGATTTTAG  1099
      | |||||  ||||||  |||||||| |||   ||||| ||||||||    
seq2  ACCTAGT--ATATGA--CGTCACAG-TGC--TGGACG-TTTTGATT----  1079

seq1  TGTTCAGATACTGTGTTCCAAGAAACCCCTCAGTTGCAGGGAAAGCAAGC  1149
       | |||||||||||||  | || || ||||||| ||||||   ||| |||
seq2  AGGTCAGATACTGTGT--CCAGGAATCCCTCAG-TGCAGG---AGC-AGC  1122

seq1  CCTTTGGTGGCCCTATTACCTACCCTGTTCTGAAAGAGAGGAGATTCTAG  1199
      |   || || ||  ||||||||  ||||||||||||| |||| |||||||
seq2  C---TGATGACC--ATTACCTA--CTGTTCTGAAAGA-AGGA-ATTCTAG  1163

seq1  AAATCATGGT  1209
      ||||||||||
seq2  AAATCATGGT  1173