BAC Information

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BAC

Clone NameB6Ng01-287J16
Chromosome15 (Build37)
Map Location 59,972,327 - 60,159,546
singlet/doubletdoublet
Overlap geneLOC100040266, LOC623048
Upstream geneEG268809, LOC665565, Sqle, E430025E21Rik, Nsmce2, Trib1, LOC665602, EG632248, LOC665613, 4933412E24Rik
Downstream geneLOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287J16.bB6Ng01-287J16.g
ACCGA085482GA085483
length1,194416
definitionB6Ng01-287J16.b B6Ng01-287J16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,158,355 - 60,159,546)(59,972,327 - 59,972,748)
sequence
gaattcattgaatctaaccacatgacatttgggaaatttctggacagaag
atacctggagatgggcaaaagcttcaagtaagagcatgagcttcatgttg
aatggagtgttttgactggaactaggcatgccatctaatcattaaattcc
tacgatttccaagatccaccccctgacatgtgcaatgatgtcccaggacg
ctcctatagctacagctttcaggattatcttcttgttgtcacagtatctg
gaggacaagacttggtgacaatggcaccacttcaaagggagttttccagg
aaacattttagataggagtggaagataagaagaggaagaatgtcttaacc
actcatcagagacctggcatatcaccatttacctggaagtaattaatgtt
agcctgctgtcctgagcattccagatcccggagagaaaataatgctaatg
gctgtgcccattttcacccacatctcagcccagatccctgacttatcctc
caacaacagctaaattgctcccttgaaaatcaataaaacatttcctttct
gacacttatgaaactgctcctgatatttattacatcctgctgtatttact
gattccacagtaaatatttgacaaatcactagaaccctctcaaaaatacg
gagatgaactggcacaggctgccacagcaaagatgcatgtttcagcccat
aatgcaattcgggtttcctgggaaatagactctgagtcattgatttgtgt
gcaggaaattcactgtgcagtgctgtcaggatgaacacttgtgggcaaga
aaagaggcagaattggcagagatgtttgaagagatgttaatttcaaagag
ctctggtgctcacatgataggtccatataccccaaagagaacggtactct
attgaccaatcattggtttccccaggatgagcccaggaataagactgccc
tgcagtatggtggtctcttcagctagtggaaattgaaaagagaaggttca
gctgggagctgtcaatagtctagcattagaaaaaacagcaatttaatatg
acggaggtttggcacagaattcacctgtgtttctttagcaaggagaagac
atggctcggctgctttacatgtccatggtgtgcctgatgctgtccagtgc
agcctgaaaattactgtccgttgtgcaggcctttgcttccaccc
atgagtcccaaacagacttcatttccatataaagttgcctaggctgtggc
attacgttactatctgtgggagtcatcggaggcagtagtgctgttcaagt
tccagtattcggacaccaggacctcataagatggaaggagggcctttgaa
tcaggaagagaatcatatgtcatggctggatgtggagataaagatggagt
aagaaagctactggctgtcagcagagctggaatgcagagaccagttgata
ggtgagtcagacaatgaaggatctcaccctcatgctatgtagtccagatt
ctttagaaggcaatgaggacaatacaaacatttaaaaaatattgtatttg
ttttcctatgagtgtacaatctgagtgtgacagtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_60158355_60159546
seq2: B6Ng01-287J16.b_46_1239 (reverse)

seq1  GGGTGGAAGCAAA-GCCTGCACAAACGAACATGTAA-TCTCA-GCTGCAC  47
      ||||||||||||| |||||||| |||| ||| |||| | ||| |||||||
seq2  GGGTGGAAGCAAAGGCCTGCAC-AACGGACA-GTAATTTTCAGGCTGCAC  48

seq1  T-GACAGCAACA-GCACA-CAAGGACATGTAAAGCAGCCGAAGCCCATGG  94
      | ||||||| || ||||| || |||||||||||||||||||   |||| |
seq2  TGGACAGCATCAGGCACACCATGGACATGTAAAGCAGCCGA--GCCAT-G  95

seq1  TCTTCT-CTTGCTTAAGAAACACA-GTGAATTCTGTGGCCCAAACCTCCC  142
      |||||| |||||| |||||||||| ||||||||||||  |||||||| ||
seq2  TCTTCTCCTTGCTAAAGAAACACAGGTGAATTCTGTG--CCAAACCT-CC  142

seq1  TTCATATTAAATTGCTGTTTTTTCTAATGCTAGACTA-TGACAGCTCCCA  191
       |||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTCATATTAAATTGCTGTTTTTTCTAATGCTAGACTATTGACAGCTCCCA  192

seq1  GCTGAACCTTCTCTTTTCAATTTCCACTAGCTGAAGAGACCACCATACTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACCTTCTCTTTTCAATTTCCACTAGCTGAAGAGACCACCATACTG  242

seq1  CAGGGCAGTC-TATTCCTGGGCTCATCCTGGGGGAACCAATGATTGGTCA  290
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  CAGGGCAGTCTTATTCCTGGGCTCATCCTGGGGAAACCAATGATTGGTCA  292

seq1  ATAGAGTACCGTTCTCTTTGGGGTATATGGACCTATCATGTGAGCACCAG  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTACCGTTCTCTTTGGGGTATATGGACCTATCATGTGAGCACCAG  342

seq1  AGCTCTTTGAAATTAACATCTCTTCAAACATCTCTGCCAATTCTGCCTCT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTTGAAATTAACATCTCTTCAAACATCTCTGCCAATTCTGCCTCT  392

seq1  TTTCTTGCCCACAAGTGTTCATCCTGACAGCACTGCACAGTGAATTTCCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCCCACAAGTGTTCATCCTGACAGCACTGCACAGTGAATTTCCT  442

seq1  GCACACAAATCAATGACTCAGAGTCTATTTCCCAGGAAACCCGAATTGCA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAAATCAATGACTCAGAGTCTATTTCCCAGGAAACCCGAATTGCA  492

seq1  TTATGGGCTGAAACATGCATCTTTGCTGTGGCAGCCTGTGCCAGTTCATC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGCTGAAACATGCATCTTTGCTGTGGCAGCCTGTGCCAGTTCATC  542

seq1  TCCGTATTTTTGAGAGGGTTCTAGTGATTTGTCAAATATTTACTGTGGAA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTATTTTTGAGAGGGTTCTAGTGATTTGTCAAATATTTACTGTGGAA  592

seq1  TCAGTAAATACAGCAGGATGTAATAAATATCAGGAGCAGTTTCATAAGTG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAATACAGCAGGATGTAATAAATATCAGGAGCAGTTTCATAAGTG  642

seq1  TCAGAAAGGAAATGTTTTATTGATTTTCAAGGGAGCAATTTAGCTGTTGT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAGGAAATGTTTTATTGATTTTCAAGGGAGCAATTTAGCTGTTGT  692

seq1  TGGAGGATAAGTCAGGGATCTGGGCTGAGATGTGGGTGAAAATGGGCACA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGATAAGTCAGGGATCTGGGCTGAGATGTGGGTGAAAATGGGCACA  742

seq1  GCCATTAGCATTATTTTCTCTCCGGGATCTGGAATGCTCAGGACAGCAGG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTAGCATTATTTTCTCTCCGGGATCTGGAATGCTCAGGACAGCAGG  792

seq1  CTAACATTAATTACTTCCAGGTAAATGGTGATATGCCAGGTCTCTGATGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATTAATTACTTCCAGGTAAATGGTGATATGCCAGGTCTCTGATGA  842

seq1  GTGGTTAAGACATTCTTCCTCTTCTTATCTTCCACTCCTATCTAAAATGT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAAGACATTCTTCCTCTTCTTATCTTCCACTCCTATCTAAAATGT  892

seq1  TTCCTGGAAAACTCCCTTTGAAGTGGTGCCATTGTCACCAAGTCTTGTCC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGAAAACTCCCTTTGAAGTGGTGCCATTGTCACCAAGTCTTGTCC  942

seq1  TCCAGATACTGTGACAACAAGAAGATAATCCTGAAAGCTGTAGCTATAGG  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATACTGTGACAACAAGAAGATAATCCTGAAAGCTGTAGCTATAGG  992

seq1  AGCGTCCTGGGACATCATTGCACATGTCAGGGGGTGGATCTTGGAAATCG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTCCTGGGACATCATTGCACATGTCAGGGGGTGGATCTTGGAAATCG  1042

seq1  TAGGAATTTAATGATTAGATGGCATGCCTAGTTCCAGTCAAAACACTCCA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTTAATGATTAGATGGCATGCCTAGTTCCAGTCAAAACACTCCA  1092

seq1  TTCAACATGAAGCTCATGCTCTTACTTGAAGCTTTTGCCCATCTCCAGGT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATGAAGCTCATGCTCTTACTTGAAGCTTTTGCCCATCTCCAGGT  1142

seq1  ATCTTCTGTCCAGAAATTTCCCAAATGTCATGTGGTTAGATTCAATGAAT  1190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTGTCCAGAAATTTCCCAAATGTCATGTGGTTAGATTCAATGAAT  1192

seq1  TC  1192
      ||
seq2  TC  1194

seq1: chr15_59972327_59972748
seq2: B6Ng01-287J16.g_67_488

seq1  GAATTCATGAGTCCCAAACAGACTTCATTTCCATATAAAGTTGCCTAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTCCCAAACAGACTTCATTTCCATATAAAGTTGCCTAGGC  50

seq1  TGTGGCATTACGTTACTATCTGTGGGAGTCATCGGAGGCAGTAGTGCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCATTACGTTACTATCTGTGGGAGTCATCGGAGGCAGTAGTGCTGT  100

seq1  TCAAGTTCCAGTATTCGGACACCAGGACCTCATAAGATGGAAGGAGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTCCAGTATTCGGACACCAGGACCTCATAAGATGGAAGGAGGGCC  150

seq1  TTTGAATCAGGAAGAGAATCATATGTCATGGCTGGATGTGGAGATAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATCAGGAAGAGAATCATATGTCATGGCTGGATGTGGAGATAAAGA  200

seq1  TGGAGTAAGAAAGCTACTGGCTGTCAGCAGAGCTGGAATGCAGAGACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTAAGAAAGCTACTGGCTGTCAGCAGAGCTGGAATGCAGAGACCAG  250

seq1  TTGATAGGTGAGTCAGACAATGAAGGATCTCACCCTCATGCTATGTAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGGTGAGTCAGACAATGAAGGATCTCACCCTCATGCTATGTAGTC  300

seq1  CAGATTCTTTAGAAGGCAATGAGGACAATACAAACATTTAAAAAATATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCTTTAGAAGGCAATGAGGACAATACAAACATTTAAAAAATATTG  350

seq1  TATTTGTTTTCCTATGAGTGTACAATCTGAGTGTGACAGTGTGTGTGTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTTCCTATGAGTGTACAATCTGAGTGTGACAGTGTGTGTGTGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGT  422
      ||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGT  422