BAC Information

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BAC

Clone NameB6Ng01-288G11
Chromosome15 (Build37)
Map Location 82,720,328 - 82,721,482
singlet/doubletsinglet
Overlap geneTcf20
Upstream geneAco2, Polr3h, Csdc2, Pmm1, EG545121, 1700029P11Rik, D15Wsu75e, Xrcc6, Nhp2l1, 4930407I10Rik, Mei1, Ccdc134, Srebf2, LOC435145, Tnfrsf13c, Cenpm, 1500009C09Rik, Sept3, Wbp2nl, Naga, C920005C14Rik, 1500032L24Rik, Ndufa6, Cyp2d22, LOC545123, Cyp2d10, Cyp2d9, EG545124, EG667196, EG667177, 9030605E09Rik, BC018285, Cyp2d13, LOC380998, LOC627860, LOC676200, 1300013D18Rik, LOC271300, Cyp2d26
Downstream geneNfam1, Serhl, 1110014J01Rik, Poldip3, Cyb5r3, A4galt, LOC100042119, Arfgap3, Pacsin2, LOC414359, Ttll1, Bik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288G11.bB6Ng01-288G11.g
ACCGA086074GA086075
length1,155954
definitionB6Ng01-288G11.b B6Ng01-288G11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaggacaaccaggctcatggagaaagaccctgtctcaaaccaaa
ccaaaataaaaccaccagagtgagatgggaagcacttttacgcttgatgg
cagggctggggtttgggggtgaagttcactctttctccggtcctagcaaa
gcaactctgttatctcttggatatctatctacctaaaacttttgtttaca
ggaaaaataaaaaaaatatttccaaacaccactttacatggctctcaggc
tagtcagagccattttgcattatttttattttagctttggcttctgtctt
gttctgttcagtgctttaacagtgaaagtactgttttgcccacaagctat
tgctctgttgtggcctatcctcaacctctgtctctgtctgtgtcagtgta
ggtcagaggttatgtaatacacaacatgtttatttctccaagtttgtctg
ttggccaagatactgtgttaataagctttttgactttatgtcttttcaca
taggtattaatgttgaatttaaattaattgaagaaaatgtacagggtgtt
tctgtgactaactaaaattaagagtagggaaaacttcagaggaagaaata
acggcctgataggaacaagatgatgaaaatcttggttctagggtatattg
aagagtttcttagggtcttaatgctgtgaacagacatcatgaccaaggca
actcttataaaaagaacatttaattggggctggcttacagggttcagaga
gtcagtccattattatcaaggtgagaacatggcagcatccaggcaggcgt
ggtgcaggtggagctgagagttctatgtcttcatctgaaggctggctccc
ttgtggttaggaggaggatctccttgcccacccgcacagttgacacaatt
tctccaacaaggcctcacttaatccaacaaggccatatctcccattagtg
ccactccttcagccaagcatattcaaatccaccacaaaaaacatggccaa
ctgtctctgaaaacaactgcagagagcccagaagagtattggtagttaga
tgaagaagctgaagaacctctgtgctctgttggagaaagctgggaaattt
ctggagattttgaaacaaggtgtacctctccattttgggtcgaataatat
cccac
gaattctctgtttcttctttttttttaatttttttattaggtatttagct
catttacatttccaatgctataccaaaagtcccccatacccacccacccc
cactcccctacccacccactccccctttttggccctggcgttcccctgta
ctggggcatataaagtttgcgtgtccaatgggcctctctttccagtgatg
gccgactaggccatcttttgatacatatgcagctagagtcaagagctccg
gggtactggttagttcataatgttgttccacctatagggttgcagatccc
tttagctccttggctactttctctagctcctccattgggagccctgtgat
ccatccattagctgactgtgagcatccacttctgtgtttgctaggccccg
gcatagtctcacaagagacagctatatctgggtcctttcgataaaatctt
gctagtgtatgcaatggtgtccgcttttggatgctgattatggggtggat
ccctggatatggcagtctctacatggtccatcctttcatgtagaagaatg
cgaatcgatccatacttatctccttgtactaaggtcaaatctaagtggat
caaggaacttcacttaaaaccagagacactgaaacttatagaggagaaag
tggggaaaagccttgaagatatgggcacaggggaaaaattcctgaacaga
acagcaatggcttgtgctgtaagatcgagaattgacaaatgggacctaat
gaaactccaaagtttctgcaaggcaaaagacaccgtcaataagacaaaaa
gaccaccaacagattgggaaaaggatctttacctatcctaaatcagatag
gggactaatatcccaccattatataaagaactcaaggaaggtgggacttt
cagaaaatcaattaacccccattaaaaaaatgggctcaaactgaacaaag
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_82720328_82721482
seq2: B6Ng01-288G11.b_45_1199 (reverse)

seq1  GTGGGATAATTATTCAACACAAA--TGAGA-GTACACC-TGTTCCAAAAT  46
      ||||||| ||||||| || ||||   |||| ||||||| |||| ||||||
seq2  GTGGGAT-ATTATTCGACCCAAAATGGAGAGGTACACCTTGTTTCAAAAT  49

seq1  CCTCCAGAAA-TTCCCAGCTTTCTCC-ACAGAGCACAGA-GTTCTTCAGC  93
       ||||||||| ||||||||||||||| |||||||||||| ||||||||||
seq2  -CTCCAGAAATTTCCCAGCTTTCTCCAACAGAGCACAGAGGTTCTTCAGC  98

seq1  TTCTTCATCTAAACTACCAATACTCCTTCTGGGCCTCTCTGCAGTTGTTT  143
      |||||||||| ||||||||||||| |||||||| ||||||||||||| ||
seq2  TTCTTCATCT-AACTACCAATACT-CTTCTGGG-CTCTCTGCAGTTG-TT  144

seq1  TTCAGAGGAACAGTTGGCCATGTTTTTTGTGGT-GATTTGAATATGCTTG  192
      |||||||  |||||||||||||||||||||||| ||||||||||||||||
seq2  TTCAGAG--ACAGTTGGCCATGTTTTTTGTGGTGGATTTGAATATGCTTG  192

seq1  GCTGAAGGAGTGGCACTAATGGGAGATATGGCCTTGTTGGATTAAGTGAG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGGAGTGGCACTAATGGGAGATATGGCCTTGTTGGATTAAGTGAG  242

seq1  GCCTTGTTGGAGAAATTGTGTCAACTGTGCGGGTGGGCAAGGAGATCCTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTGGAGAAATTGTGTCAACTGTGCGGGTGGGCAAGGAGATCCTC  292

seq1  CTCCTAACCACAAGGGAGCCAGCCTTCAGATGAAGACATAGAACTCTCAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAACCACAAGGGAGCCAGCCTTCAGATGAAGACATAGAACTCTCAG  342

seq1  CTCCACCTGCACCACGCCTGCCTGGATGCTGCCATGTTCTCACCTTGATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCTGCACCACGCCTGCCTGGATGCTGCCATGTTCTCACCTTGATA  392

seq1  ATAATGGACTGACTCTCTGAACCCTGTAAGCCAGCCCCAATTAAATGTTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGACTGACTCTCTGAACCCTGTAAGCCAGCCCCAATTAAATGTTC  442

seq1  TTTTTATAAGAGTTGCCTTGGTCATGATGTCTGTTCACAGCATTAAGACC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAAGAGTTGCCTTGGTCATGATGTCTGTTCACAGCATTAAGACC  492

seq1  CTAAGAAACTCTTCAATATACCCTAGAACCAAGATTTTCATCATCTTGTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAACTCTTCAATATACCCTAGAACCAAGATTTTCATCATCTTGTT  542

seq1  CCTATCAGGCCGTTATTTCTTCCTCTGAAGTTTTCCCTACTCTTAATTTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCAGGCCGTTATTTCTTCCTCTGAAGTTTTCCCTACTCTTAATTTT  592

seq1  AGTTAGTCACAGAAACACCCTGTACATTTTCTTCAATTAATTTAAATTCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGTCACAGAAACACCCTGTACATTTTCTTCAATTAATTTAAATTCA  642

seq1  ACATTAATACCTATGTGAAAAGACATAAAGTCAAAAAGCTTATTAACACA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATACCTATGTGAAAAGACATAAAGTCAAAAAGCTTATTAACACA  692

seq1  GTATCTTGGCCAACAGACAAACTTGGAGAAATAAACATGTTGTGTATTAC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTTGGCCAACAGACAAACTTGGAGAAATAAACATGTTGTGTATTAC  742

seq1  ATAACCTCTGACCTACACTGACACAGACAGAGACAGAGGTTGAGGATAGG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTCTGACCTACACTGACACAGACAGAGACAGAGGTTGAGGATAGG  792

seq1  CCACAACAGAGCAATAGCTTGTGGGCAAAACAGTACTTTCACTGTTAAAG  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAACAGAGCAATAGCTTGTGGGCAAAACAGTACTTTCACTGTTAAAG  842

seq1  CACTGAACAGAACAAGACAGAAGCCAAAGCTAAAATAAAAATAATGCAAA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAACAGAACAAGACAGAAGCCAAAGCTAAAATAAAAATAATGCAAA  892

seq1  ATGGCTCTGACTAGCCTGAGAGCCATGTAAAGTGGTGTTTGGAAATATTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCTGACTAGCCTGAGAGCCATGTAAAGTGGTGTTTGGAAATATTT  942

seq1  TTTTTATTTTTCCTGTAAACAAAAGTTTTAGGTAGATAGATATCCAAGAG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTTTCCTGTAAACAAAAGTTTTAGGTAGATAGATATCCAAGAG  992

seq1  ATAACAGAGTTGCTTTGCTAGGACCGGAGAAAGAGTGAACTTCACCCCCA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGAGTTGCTTTGCTAGGACCGGAGAAAGAGTGAACTTCACCCCCA  1042

seq1  AACCCCAGCCCTGCCATCAAGCGTAAAAGTGCTTCCCATCTCACTCTGGT  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGCCCTGCCATCAAGCGTAAAAGTGCTTCCCATCTCACTCTGGT  1092

seq1  GGTTTTATTTTGGTTTGGTTTGAGACAGGGTCTTTCTCCATGAGCCTGGT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTTGGTTTGGTTTGAGACAGGGTCTTTCTCCATGAGCCTGGT  1142

seq1  TGTCCTAGAATTC  1155
      |||||||||||||
seq2  TGTCCTAGAATTC  1155