BAC Information

Click to search

BAC

Clone NameB6Ng01-288I03
Chromosome15 (Build37)
Map Location 89,505,842 - 89,644,196
singlet/doubletdoublet
Overlap geneLOC676575, Syt10
Upstream geneBrd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
Downstream geneAlg10b, Cpne8, EG627342, LOC100042462, LOC100042471, EG667682
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288I03.bB6Ng01-288I03.g
ACCGA086151GA086152
length1,1801,135
definitionB6Ng01-288I03.b B6Ng01-288I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,505,842 - 89,507,016)(89,643,082 - 89,644,196)
sequence
gaattcactctgtagaccaggctggcctcgaactcagaaatccgcctacc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccacgcccggctt
ccacaggtccattcttatcaccctgctcaaaaccctttttccacaattgc
tttttgtcattgtgcttcattgtagcaatagaaaccctaactaagacacc
tcataccacagtttctaactagtttaggatattgcagtttctatcattga
tggcttgaaatcatctttctaaaattctaaaattgctacttgtagttaga
agtaccatacactggctgcattcaatactaaaagatcttattctatcacg
tgctctattacagagtggtatgaaactagagtaaaaaggaagagaagaca
ccacttcaaagtcaggatgaagacagccacagacttgacaaggtcaatgc
gacgcactatctcttgttacagctattcaacagtttctgattcttaagga
gatttgaaaactagggggagaacatttttatgtaggcctaaggtttgttg
gaaaatgtttacatagggcataaaacctttatgattatcattttattgca
catcttccattgattatgtcctggctcaagttttgacaacttgacacaag
ttagagtcatttgggaagaggaaaactcaattgagaaaacacatacataa
gacaggcttgtggacaagtgagttgtatattttctttgattggtgattgg
tgttgggtggtgccatccctgggcgtgtggtactggattatatgagaaag
cagactgagcaggccacgaggaacaaggcagtaagccaaattcttccatg
gcctctgcttcagttcctgctgtcagttccctgccttgagttcctggcct
caattccatcgatgaatctgggaagtgacctttcaagttgttttgatcat
ggtgttttatcacaacattgaaaaaccctaacttatgttatcttcttcac
tttagcattttcattgtcttttgtaatgttttcttttaaaattattaaaa
aataaatttaagcattgtttttacaagtatagtcctccaatcattatttc
aatcctggtgcctaaaagaaccagatggaaccacatgccttttctggagt
ggggcctatgtagatattacgtgggtgttc
gaattcctttgtttaaagtgattttatttcacaggtcaaacctgaactat
atgctgatgcatcgtggtttgatctgaaacagcccatgactttagaagct
tctatggaatgtgcatggttacagtatatgggtgctaaaggatcaaaaaa
taattctccatattagaattatttttttcatgatatgtacttttttcaat
tacaaaatcatacagtattgaaactttggaaagcagcacaaacagaatag
aaataaagaaatcaacaatgctgccaattatgtaaatgttttggtttcct
gtttctgctctgaatgcattaaaataattatgattacactgaatttttat
tttgacactgattttgctccatgatttgtctcaatgcatgacctttattg
ttttgaattttttaattatcagtgtgtttgtgaatgtgtctgcatgtgtg
tgtgtttctgtgtgtgtacccacacatgcatgcaaagtatgtacatgtac
catgataggtacttacaaaggtcagagaacaattccgtggagttggttct
ttcctaccctgacatggggcccttgaatctaattcatgttcccaggcttg
tactgcaagtgtttttacatgctgaacagtatcattggccaaaatgtaca
gtatctaaatatgtaatccatttaattaactattttcttcttacacactt
agatgaagcataaattttgtttttttaaaaagggaattattttaattcac
ttatataaggctgtctgtcctgccatacaattacagaagaggaattaacg
tctcgctctcggatttgattactaacttgttttgattcattaattttaaa
gtgggagcattttactttttaccttcgggtttgtgttgatacacttatca
gtttgtcttaacatttttactgaaattggatgtttgaatagagacacagt
tttattttttaaaaagaaaaaaaagaacattttataaattcaaattaact
ccttcttctgaggccggtgttttgaagtaatgttattgttacagaattgt
gtggagaactgcagaagttgccaacattatttgcctttccagtccgcttg
ggggtttcactgttacagcatattcctttaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89505842_89507016
seq2: B6Ng01-288I03.b_47_1226

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTACC  50

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTT  100

seq1  CCACAGGTCCATTCTTATCACCCTGCTCAAAACCCTTTTTCCACAATTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGTCCATTCTTATCACCCTGCTCAAAACCCTTTTTCCACAATTGC  150

seq1  TTTTTGTCATTGTGCTTCATTGTAGCAATAGAAACCCTAACTAAGACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTCATTGTGCTTCATTGTAGCAATAGAAACCCTAACTAAGACACC  200

seq1  TCATACCACAGTTTCTAACTAGTTTAGGATATTGCAGTTTCTATCATTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCACAGTTTCTAACTAGTTTAGGATATTGCAGTTTCTATCATTGA  250

seq1  TGGCTTGAAATCATCTTTCTAAAATTCTAAAATTGCTACTTGTAGTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAAATCATCTTTCTAAAATTCTAAAATTGCTACTTGTAGTTAGA  300

seq1  AGTACCATACACTGGCTGCATTCAATACTAAAAGATCTTATTCTATCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCATACACTGGCTGCATTCAATACTAAAAGATCTTATTCTATCACG  350

seq1  TGCTCTATTACAGAGTGGTATGAAACTAGAGTAAAAAGGAAGAGAAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTATTACAGAGTGGTATGAAACTAGAGTAAAAAGGAAGAGAAGACA  400

seq1  CCACTTCAAAGTCAGGATGAAGACAGCCACAGACTTGACAAGGTCAATGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCAAAGTCAGGATGAAGACAGCCACAGACTTGACAAGGTCAATGC  450

seq1  GACGCACTATCTCTTGTTACAGCTATTCAACAGTTTCTGATTCTTAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCACTATCTCTTGTTACAGCTATTCAACAGTTTCTGATTCTTAAGGA  500

seq1  GATTTGAAAACTAGGGGGAGAACATTTTTATGTAGGCCTAAGGTTTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAAAACTAGGGGGAGAACATTTTTATGTAGGCCTAAGGTTTGTTG  550

seq1  GAAAATGTTTACATAGGGCATAAAACCTTTATGATTATCATTTTATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTACATAGGGCATAAAACCTTTATGATTATCATTTTATTGCA  600

seq1  CATCTTCCATTGATTATGTCCTGGCTCAAGTTTTGACAACTTGACACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCATTGATTATGTCCTGGCTCAAGTTTTGACAACTTGACACAAG  650

seq1  TTAGAGTCATTTGGGAAGAGGAAAACTCAATTGAGAAAACACATACATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTCATTTGGGAAGAGGAAAACTCAATTGAGAAAACACATACATAA  700

seq1  GACAGGCTTGTGGACAAGTGAGTTGTATATTTTC-TTGATTGGTGATTGG  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACAGGCTTGTGGACAAGTGAGTTGTATATTTTCTTTGATTGGTGATTGG  750

seq1  TGTTGGGTGGTGCCATCCCTGGGCGTGTGGTACTGGATTATATGAGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGTGGTGCCATCCCTGGGCGTGTGGTACTGGATTATATGAGAAAG  800

seq1  CAGACTGAGCAGGCCACGAGGAACAAGGCAGTAAGCCAAATTCTTCCATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGAGCAGGCCACGAGGAACAAGGCAGTAAGCCAAATTCTTCCATG  850

seq1  GCCTCTGCTTCAGTTCCTGCTGTCAGGTTCCTGCCTTGAGTTCCTGGCCT  899
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  GCCTCTGCTTCAGTTCCTGCTGTCAGTTCCCTGCCTTGAGTTCCTGGCCT  900

seq1  CAATTCCATCGATGAATCT-GGAAGTGACCTTTCAAGTTGTTTTGATCAT  948
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAATTCCATCGATGAATCTGGGAAGTGACCTTTCAAGTTGTTTTGATCAT  950

seq1  GGTGTTTTATCACAACAATGAAAAA-CCTAAC-TATGTTATCT--CTCAC  994
      ||||||||||||||||| ||||||| |||||| ||||||||||   ||||
seq2  GGTGTTTTATCACAACATTGAAAAACCCTAACTTATGTTATCTTCTTCAC  1000

seq1  -TTAGCATTTTCATTGTC-TTTGT-ATGTTT--CTATAAAATAATAAAAA  1039
       ||||||||||||||||| ||||| ||||||   | |||||| || ||||
seq2  TTTAGCATTTTCATTGTCTTTTGTAATGTTTTCTTTTAAAATTATTAAAA  1050

seq1  ATTAAATTTAAGCATTG-TTTTACAAAGATAGTCCTCAAATCATTATTTC  1088
      | ||||||||||||||| ||||||||  ||||||||| ||||||||||||
seq2  AATAAATTTAAGCATTGTTTTTACAAGTATAGTCCTCCAATCATTATTTC  1100

seq1  AATCCT-GTGCCCAGAAGAGACAGATGGAACACAAAGTGTCTTTTCTGGT  1137
      |||||| ||||| | ||||  |||||||||| || | || ||||||||| 
seq2  AATCCTGGTGCCTAAAAGAACCAGATGGAAC-CACA-TGCCTTTTCTGGA  1148

seq1  GTGGGGCCCTAGTGATGATTATTTCTGTGTGGGTGTTC  1175
      |||||| |||| ||  || |||| |   ||||||||||
seq2  GTGGGG-CCTA-TGTAGA-TATTAC---GTGGGTGTTC  1180

seq1: chr15_89643082_89644196
seq2: B6Ng01-288I03.g_69_1203 (reverse)

seq1  TTTCTTAAA-GAATATGCTGTAACAGTGAA---CCCCAGC-GACTGAAAA  45
      ||||||||| ||||||||||||||||||||   ||| ||| ||||| |||
seq2  TTTCTTAAAGGAATATGCTGTAACAGTGAAACCCCCAAGCGGACTGGAAA  50

seq1  GGC-AATAATGTT-GCAAC-TCTGCAGTTCT-CACACAA-TCTGTAACAA  90
      ||| ||||||||| ||||| ||||||||||| ||||||| ||||||||||
seq2  GGCAAATAATGTTGGCAACTTCTGCAGTTCTCCACACAATTCTGTAACAA  100

seq1  TAACAATTACTTC-AAACACCGGCCTCAG-AGAAGGAGTTATTTTGAATT  138
      |||| |||||||| ||||||||||||||| ||||||||||| ||||||||
seq2  TAAC-ATTACTTCAAAACACCGGCCTCAGAAGAAGGAGTTAATTTGAATT  149

seq1  TATAAAATGTTC--TTTTTTCTTTT--AAAAAT-AAACTGTTGTCTCTAT  183
      ||||||||||||  |||||||||||  |||||| |||||| |||||||||
seq2  TATAAAATGTTCTTTTTTTTCTTTTTAAAAAATAAAACTG-TGTCTCTAT  198

seq1  TC-AACAT-CAATTTCAGT-AAAATGTTAAGACAAACTGATAAGTGTATC  230
      || ||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TCAAACATCCAATTTCAGTAAAAATGTTAAGACAAACTGATAAGTGTATC  248

seq1  AACAC-AACCCGAAGGTAAAAAGTAAAATGCTCCCACTTTAAAATTAATG  279
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAACCCGAAGGTAAAAAGTAAAATGCTCCCACTTTAAAATTAATG  298

seq1  AATCAAAACAAGTTAGTAATCAAATCCGAGAGCGAGACGTTAATTCCTCT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACAAGTTAGTAATCAAATCCGAGAGCGAGACGTTAATTCCTCT  348

seq1  TCTGTAATTGTATGGCAGGACAGACAGCCTTATATAAGTGAATTAAAATA  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTGTATGGCAGGACAGACAGCCTTATATAAGTGAATTAAAATA  398

seq1  ATTCCCTTTTT-AAAAAACAAAATTTATGCTTCATCTAAGTGTGTAAGAA  428
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTTTTTAAAAAAACAAAATTTATGCTTCATCTAAGTGTGTAAGAA  448

seq1  GAAAATAGTTAATTAAATGGATTACATATTTAGATACTGTACATTTTGGC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGTTAATTAAATGGATTACATATTTAGATACTGTACATTTTGGC  498

seq1  CAATGATACTGTTCAGCATGTAAAAACACTTGCAGTACAAGCCTGGGAAC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATACTGTTCAGCATGTAAAAACACTTGCAGTACAAGCCTGGGAAC  548

seq1  ATGAATTAGATTCAAGGGCCCCATGTCAGGGTAGGAAAGAACCAACTCCA  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTAGATTCAAGGGCCCCATGTCAGGGTAGGAAAGAACCAACTCCA  598

seq1  CGGAATTGTTCTCTGACCTTTGTAAGTACCTATCATGGTACATGTACATA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAATTGTTCTCTGACCTTTGTAAGTACCTATCATGGTACATGTACATA  648

seq1  CTTTGCATGCATGTGTGGGTACACACACAGAAACACACACACATGCAGAC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATGCATGTGTGGGTACACACACAGAAACACACACACATGCAGAC  698

seq1  ACATTCACAAACACACTGATAATTAAAAAATTCAAAACAATAAAGGTCAT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACAAACACACTGATAATTAAAAAATTCAAAACAATAAAGGTCAT  748

seq1  GCATTGAGACAAATCATGGAGCAAAATCAGTGTCAAAATAAAAATTCAGT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGAGACAAATCATGGAGCAAAATCAGTGTCAAAATAAAAATTCAGT  798

seq1  GTAATCATAATTATTTTAATGCATTCAGAGCAGAAACAGGAAACCAAAAC  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATCATAATTATTTTAATGCATTCAGAGCAGAAACAGGAAACCAAAAC  848

seq1  ATTTACATAATTGGCAGCATTGTTGATTTCTTTATTTCTATTCTGTTTGT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATAATTGGCAGCATTGTTGATTTCTTTATTTCTATTCTGTTTGT  898

seq1  GCTGCTTTCCAAAGTTTCAATACTGTATGATTTTGTAATTGAAAAAAGTA  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTCCAAAGTTTCAATACTGTATGATTTTGTAATTGAAAAAAGTA  948

seq1  CATATCATGAAAAAAATAATTCTAATATGGAGAATTATTTTTTGATCCTT  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATGAAAAAAATAATTCTAATATGGAGAATTATTTTTTGATCCTT  998

seq1  TAGCACCCATATACTGTAACCATGCACATTCCATAGAAGCTTCTAAAGTC  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCCATATACTGTAACCATGCACATTCCATAGAAGCTTCTAAAGTC  1048

seq1  ATGGGCTGTTTCAGATCAAACCACGATGCATCAGCATATAGTTCAGGTTT  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGTTTCAGATCAAACCACGATGCATCAGCATATAGTTCAGGTTT  1098

seq1  GACCTGTGAAATAAAATCACTTTAAACAAAGGAATTC  1115
      |||||||||||||||||||||||||||||||||||||
seq2  GACCTGTGAAATAAAATCACTTTAAACAAAGGAATTC  1135