BAC Information

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BAC

Clone NameB6Ng01-289L08
Chromosome15 (Build37)
Map Location 29,718,237 - 29,881,014
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC382975, Ctnnd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289L08.bB6Ng01-289L08.g
ACCGA087034GA087035
length1,112622
definitionB6Ng01-289L08.b B6Ng01-289L08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,879,886 - 29,881,014)(29,718,237 - 29,718,858)
sequence
gaattctaggtttggggctaatatccacttatcagtgagtacatattgtg
tgagttcctttgtgaatgtgttgtaagttctgctcacagaactcagtttt
taaattttatttgtccactaaatgaaagtccaatttaactttttgaaatc
ctactgttaactatgttcctcttaaaacaagtcttttcctatatattgtg
agcactgaaggattttcaaaagttaaaaatgccacacctgctaggatgac
accccaacaccaactgcatattgggatgtaaggacggaagtgagcaaagt
cccttcaggaggagtggtggttaagcagaaagaataatttaaaaaccatc
cctggtgagaagttcttttaggcagtgcctcaaacaagaacccctggagt
attctggaaagccgatgaagaggaaagacagggattgaaagaaaatctag
tctgatccttatttgtccagaaaaaagaagagaagaaaatgtattacagg
acgcaccctgctgtgtgtcacaaaggtagcaggatggaaagtttaataat
ctcaatgtgtcctgtcctttatgtactaccctattgaacaggaagtagta
gtctgtatctgccaattcaatgtatctatctcctgtttctcatgcgtctt
ctaagcatccacttctctagcctactgtctggaaagagctgttcctgcga
ttgattctatgggagatctgtaagctgagatccacctccctgtctttctt
ggaccttttatgcagaccaagcatttgtgttatcctttcctttttaattt
cttccataattttcagtttttagtcagcagacaaagaataaaattattta
ttcttttaaaactccctttctcctctgcccctctaccaccaccactacaa
cctggaccttatgcacaccaagcaagtggtcttccactgagccacattct
acctctcaagatattgtcattatctcacagacatgacatgtcttttcttt
tgtgtagacttctagtctgtatcttttataattagaaacagctgtgtcat
gtggttatgctcagtttaaaacagcattatgagataatgcattttatatg
ctgataatggca

gaattcaacaggctccttccaatattcaatcatctgagaattcaacaatc
tgaaaagcttatccacctctctgctttgtacctgaagttttgggaagcat
gaagtgattggaaaccatgccttctgacctatcatttaaagtcttgttga
gtattgaagggacaataatgaaaaagcagtcctgagtgcatccatcacag
tagctgtgatgatggtattttaaattctaaagatgtgttttgattcactt
agacacctatgttctgttgaacacattagccttgtgaaacacagacagat
gagataagggttttcaaagtgtgaaacgtgaatatagaatgtaaaatcat
aggcataaaaataataaaaaatagctaacttctacgctgaggagaagggc
aaccttgtaggaggaccagcagtctcaattaatctggatccccaagatct
cttaagacactggaccaccaaccaggcagcatacaccagctgatatgagg
cccacaacacctatacagcagaggactgcctggtctggtttcagtcagag
aagatgcaactaaatcctcaagagacaggaggccccaagaaatggagagt
tctggtggggtggggggtgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_29879886_29881014
seq2: B6Ng01-289L08.b_48_1159 (reverse)

seq1  TGCCATGTTATTCAGCATATAAAATGCCATTTATCTTCATAATTGCTGTT  50
      |||||  ||| ||||||||||||||||   ||||| |||||| |||||||
seq2  TGCCA--TTA-TCAGCATATAAAATGC--ATTATC-TCATAA-TGCTGTT  43

seq1  TTTAAAAACTGGAGCATAAAACCACATGACCACAAGCTGTTTCCTAATTA  100
      ||   ||||| ||||||  |||||||||| ||| |||||||| |||||||
seq2  TT---AAACT-GAGCAT--AACCACATGA-CAC-AGCTGTTT-CTAATTA  84

seq1  TAAAAGATACAGACCTAGAAGTCTACACAAAAGAAAAGACATGTCATTGT  150
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  TAAAAGATACAGA-CTAGAAGTCTACACAAAAGAAAAGACATGTCA-TGT  132

seq1  CTGTGAGATAATGACAATATCTTGAGAGGTAGAATGTGGCTCAGTGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGATAATGACAATATCTTGAGAGGTAGAATGTGGCTCAGTGGAAG  182

seq1  ACCACTTGCTTGGTGTGCATAAGGTCCAGGTTGTAGTGGTGGTGGTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTGCTTGGTGTGCATAAGGTCCAGGTTGTAGTGGTGGTGGTAGAG  232

seq1  GGGCAGAGGAG-AAGGGAGTTTTAAAAGAATAAATAATTTTATTCTTTGT  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGAGGAGAAAGGGAGTTTTAAAAGAATAAATAATTTTATTCTTTGT  282

seq1  CTGCTGACTAAAAACTGAAAATTATGGAAGAAATTAAAAAGGAAAGGATA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGACTAAAAACTGAAAATTATGGAAGAAATTAAAAAGGAAAGGATA  332

seq1  ACACAAATGCTTGGTCTGCATAAAAGGTCCAAGAAAGACAGGGAGGTGGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAATGCTTGGTCTGCATAAAAGGTCCAAGAAAGACAGGGAGGTGGA  382

seq1  TCTCAGCTTACAGATCTCCCATAGAATCAATCGCAGGAACAGCTCTTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTTACAGATCTCCCATAGAATCAATCGCAGGAACAGCTCTTTCC  432

seq1  AGACAGTAGGCTAGAGAAGTGGATGCTTAGAAGACGCATGAGAAACAGGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAGGCTAGAGAAGTGGATGCTTAGAAGACGCATGAGAAACAGGA  482

seq1  GATAGATACATTGAATTGGCAGATACAGACTACTACTTCCTGTTCAATAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGATACATTGAATTGGCAGATACAGACTACTACTTCCTGTTCAATAG  532

seq1  GGTAGTACATAAAGGACAGGACACATTGAGATTATTAAACTTTCCATCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTACATAAAGGACAGGACACATTGAGATTATTAAACTTTCCATCCT  582

seq1  GCTACCTTTGTGACACACAGCAGGGTGCGTCCTGTAATACATTTTCTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTTTGTGACACACAGCAGGGTGCGTCCTGTAATACATTTTCTTCT  632

seq1  CTTCTTTTTTCTGGACAAATAAGGATCAGACTAGATTTTCTTTCAATCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTTTCTGGACAAATAAGGATCAGACTAGATTTTCTTTCAATCCC  682

seq1  TGTCTTTCCTCTTCATCGGCTTTCCAGAATACTCCAGGGGTTCTTGTTTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCCTCTTCATCGGCTTTCCAGAATACTCCAGGGGTTCTTGTTTG  732

seq1  AGGCACTGCCTAAAAGAACTTCTCACCAGGGATGGTTTTTAAATTATTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGCCTAAAAGAACTTCTCACCAGGGATGGTTTTTAAATTATTCT  782

seq1  TTCTGCTTAACCACCACTCCTCCTGAAGGGACTTTGCTCACTTCCGTCCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTAACCACCACTCCTCCTGAAGGGACTTTGCTCACTTCCGTCCT  832

seq1  TACATCCCAATATGCAGTTGGTGTTGGGGTGTCATCCTAGCAGGTGTGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCCCAATATGCAGTTGGTGTTGGGGTGTCATCCTAGCAGGTGTGGC  882

seq1  ATTTTTAACTTTTGAAAATCCTTCAGTGCTCACAATATATAGGAAAAGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAACTTTTGAAAATCCTTCAGTGCTCACAATATATAGGAAAAGAC  932

seq1  TTGTTTTAAGAGGAACATAGTTAACAGTAGGATTTCAAAAAGTTAAATTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAGAGGAACATAGTTAACAGTAGGATTTCAAAAAGTTAAATTG  982

seq1  GACTTTCATTTAGTGGACAAATAAAATTTAAAAACTGAGTTCTGTGAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCATTTAGTGGACAAATAAAATTTAAAAACTGAGTTCTGTGAGCA  1032

seq1  GAACTTACAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTACAACACATTCACAAAGGAACTCACACAATATGTACTCACTGAT  1082

seq1  AAGTGGATATTAGCCCCAAACCTAGAATTC  1129
      ||||||||||||||||||||||||||||||
seq2  AAGTGGATATTAGCCCCAAACCTAGAATTC  1112


seq1: chr15_29718237_29718858
seq2: B6Ng01-289L08.g_69_690

seq1  GAATTCAACAGGCTCCTTCCAATATTCAATCATCTGAGAATTCAACAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGGCTCCTTCCAATATTCAATCATCTGAGAATTCAACAATC  50

seq1  TGAAAAGCTTATCCACCTCTCTGCTTTGTACCTGAAGTTTTGGGAAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCTTATCCACCTCTCTGCTTTGTACCTGAAGTTTTGGGAAGCAT  100

seq1  GAAGTGATTGGAAACCATGCCTTCTGACCTATCATTTAAAGTCTTGTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGATTGGAAACCATGCCTTCTGACCTATCATTTAAAGTCTTGTTGA  150

seq1  GTATTGAAGGGACAATAATGAAAAAGCAGTCCTGAGTGCATCCATCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGAAGGGACAATAATGAAAAAGCAGTCCTGAGTGCATCCATCACAG  200

seq1  TAGCTGTGATGATGGTATTTTAAATTCTAAAGATGTGTTTTGATTCACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTGATGATGGTATTTTAAATTCTAAAGATGTGTTTTGATTCACTT  250

seq1  AGACACCTATGTTCTGTTGAACACATTAGCCTTGTGAAACACAGACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCTATGTTCTGTTGAACACATTAGCCTTGTGAAACACAGACAGAT  300

seq1  GAGATAAGGGTTTTCAAAGTGTGAAACGTGAATATAGAATGTAAAATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAGGGTTTTCAAAGTGTGAAACGTGAATATAGAATGTAAAATCAT  350

seq1  AGGCATAAAAATAATAAAAAATAGCTAACTTCTACGCTGAGGAGAAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAAAATAATAAAAAATAGCTAACTTCTACGCTGAGGAGAAGGGC  400

seq1  AACCTTGTAGGAGGACCAGCAGTCTCAATTAATCTGGATCCCCAAGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGTAGGAGGACCAGCAGTCTCAATTAATCTGGATCCCCAAGATCT  450

seq1  CTTAAGACACTGGACCACCAACCAGGCAGCATACACCAGCTGATATGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGACACTGGACCACCAACCAGGCAGCATACACCAGCTGATATGAGG  500

seq1  CCCACAACACCTATACAGCAGAGGACTGCCTGGTCTGGTTTCAGTCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAACACCTATACAGCAGAGGACTGCCTGGTCTGGTTTCAGTCAGAG  550

seq1  AAGATGCAACTAAATCCTCAAGAGACAGGAGGCCCCAAGAAATGGAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAACTAAATCCTCAAGAGACAGGAGGCCCCAAGAAATGGAGAGT  600

seq1  TCTGGTGGGGTGGGGGGTGAGG  622
      ||||||||||||||||||||||
seq2  TCTGGTGGGGTGGGGGGTGAGG  622


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