BAC Information

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BAC

Clone NameB6Ng01-289O01
Chromosome15 (Build37)
Map Location 53,305,006 - 53,431,450
singlet/doubletdoublet
Overlap geneSamd12
Upstream geneLOC100039748, Thrap6, LOC100039745, Ext1
Downstream geneEG665097, EG621631, Tnfrsf11b, LOC665280, EG383032, Colec10, Mal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289O01.bB6Ng01-289O01.g
ACCGA087159GA087160
length2091,105
definitionB6Ng01-289O01.b B6Ng01-289O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,305,006 - 53,305,244)(53,430,342 - 53,431,450)
sequence
tacaagctctctaggatgataccagtgtcacgaagacatggaccactcag
tgttactaatacatggaccacactctagcaaggtctgagggctcccaacc
tcctaccgtagcactcactggcagcttgagctttgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgt
gtgagtgtg

gaattccttgccaaaattaaatataacttgttgagaatgttaggtagttc
tttgttaatgccacttcttgataattaacaaggctacactattcctcctc
tgttaaaaaataaaatgtgtttaaaaaaataagttgaggcagatttataa
tagaccttcatacacatgacatagaaaggggcaaaaatgaaatagctggg
tttgtatagtgggtgtcttagtcagggtttctattcctgcacaaacatca
tgaccaagaaacaagttggggaggaaagggtttattcggcttacacttcc
atgctgttgttcatcaccaaaggaagtcaggactggaactcaaacaggtc
agggagcaggagctgatacagaggccatggagggatgttctttactggct
tgcctcctctggcttgctcagcctgctctcttatagaatccaagactacc
agcccagagatggcaccacccacaaggggcctttcccccttgatcactaa
ttgagaaaatgccttacagttggatctcttggaggcatttcctcaactga
agctcctttctctgtgatttctccagctgtgtcaagttgacacaaaacta
gccagtacagtgggattaaagatagattctctatcaaaaaaatgatgttt
agtattttatagcctgtttttgatggtaaaagaaaaaaaaaatcttagaa
agaagcaagaatattttggggtaaaagtacatcccaaaaagctttgtata
acttgtaagaacccaagtgagtgaaagatttctccctgtacaaatgattt
accagtgctgttgtttcatgtagatttcttcaattcgggctttttttttt
ttctgcaagatgtttcatttattcactcaataaataaatgttaagtatgg
gtggtatgtcagaaagtcttactagaacatttgttttctctgtattaatt
aataatgggtgacaaattttatagccctgttacctccccggctgtttctc
ttcctacacatactatttctcattagtcctgcaaaggtagatagacacat
gtattagtcatatcaactcctagctgtgtagcaaatgttttccaaaggtt
agttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_53305006_53305244
seq2: B6Ng01-289O01.b_50_258

seq1  TACAAGCTCTCTAGGATGATACCAGTGTCACGAAGACATGGACCACTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGCTCTCTAGGATGATACCAGTGTCACGAAGACATGGACCACTCAG  50

seq1  TGTTACTAATACATGGACCACACTCTAGCAAGGTCTGAGGGCTCCCAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTAATACATGGACCACACTCTAGCAAGGTCTGAGGGCTCCCAACC  100

seq1  TCCTACCGTAGCACTCACTGGCAGCTTGAGCTTTGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCGTAGCACTCACTGGCAGCTTGAGCTTTGTGTGTGTGTGTGTGT  150

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTATGTGTGT  200
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGT  200

seq1  GTGTGTGTGTGTGTGCATGTGTATGTGTGTGTGCGTGTG  239
      ||| |||||                              
seq2  GTGAGTGTG------------------------------  209


seq1: chr15_53430342_53431450
seq2: B6Ng01-289O01.g_67_1171 (reverse)

seq1  CAACTAAGCCACTTACTTTTTGGAAAACATTTGCTACAACAGCTA-GAGT  49
      ||||||| |         ||||||||||||||||||| ||||||| ||||
seq2  CAACTAACC---------TTTGGAAAACATTTGCTAC-ACAGCTAGGAGT  40

seq1  TGATATGACTAATACATGTGTCCTATCTA-CTTTGCAGGACT-ATGAGAA  97
      ||||||||||||||||||||| ||||||| |||||||||||| |||||||
seq2  TGATATGACTAATACATGTGT-CTATCTACCTTTGCAGGACTAATGAGAA  89

seq1  ATAGTATGTGTAAGGAAGAGAAACAGCCCGGGGAGGTAACAGGGCTATAA  147
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  ATAGTATGTGT-AGGAAGAGAAACAG-CCGGGGAGGTAACAGGGCTATAA  137

seq1  AAATTGTCA-CCATTATT-ATTAATACAGAGAAAACAAATG-TCTAGT-A  193
      || |||||| |||||||| |||||||||||||||||||||| |||||| |
seq2  AATTTGTCACCCATTATTAATTAATACAGAGAAAACAAATGTTCTAGTAA  187

seq1  GACTTTCTGACATACCACCCATACTTAACATTTATTTATTGAGTGAATAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGACATACCACCCATACTTAACATTTATTTATTGAGTGAATAA  237

seq1  ATG-AACATCTTGCAG-AAAAAAAAAAAGCCCGAATTGAAGAAATCTACA  291
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  ATGAAACATCTTGCAGAAAAAAAAAAAAGCCCGAATTGAAGAAATCTACA  287

seq1  TGAAACAACAGCACTGGTAAATCATTTGTACAGGGAGAAATCTTTCACTC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAACAGCACTGGTAAATCATTTGTACAGGGAGAAATCTTTCACTC  337

seq1  ACTTGGGTTCTTACAAGTTATACAAAGCTTTTTGGGATGTACTTTTACCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGTTCTTACAAGTTATACAAAGCTTTTTGGGATGTACTTTTACCC  387

seq1  CAAAATATTCTTGCTTCTTTCTAAGATTTTTTTTTTCTTTTACCATCAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTCTTGCTTCTTTCTAAGATTTTTTTTTTCTTTTACCATCAAA  437

seq1  AACAGGCTATAAAATACTAAACATCATTTTTTTGATAGAGAATCTATCTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTATAAAATACTAAACATCATTTTTTTGATAGAGAATCTATCTT  487

seq1  TAATCCCACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCCACTGTACTGGCTAGTTTTGTGTCAACTTGACACAGCTGGAGAA  537

seq1  ATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCAAGAGATCCAAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCAAGAGATCCAAC  587

seq1  TGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGG  637

seq1  TGGTGCCATCTCTGGGCTGGTAGTCTTGGATTCTATAAGAGAGCAGGCTG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCATCTCTGGGCTGGTAGTCTTGGATTCTATAAGAGAGCAGGCTG  687

seq1  AGCAAGCCAGAGGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCAGAGGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTG  737

seq1  TATCAGCTCCTGCTCCCTGACCTGTTTGAGTTCCAGTCCTGACTTCCTTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTCCTGCTCCCTGACCTGTTTGAGTTCCAGTCCTGACTTCCTTT  787

seq1  GGTGATGAACAACAGCATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGAACAACAGCATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCC  837

seq1  CAACTTGTTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGTTTCTTGGTCATGATGTTTGTGCAGGAATAGAAACCCTGACTA  887

seq1  AGACACCCACTATACAAACCCAGCTATTTCATTTTTGCCCCTTTCTATGT  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCACTATACAAACCCAGCTATTTCATTTTTGCCCCTTTCTATGT  937

seq1  CATGTGTATGAAGGTCTATTATAAATCTGCCTCAACTTATTTTTTTAAAC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATGAAGGTCTATTATAAATCTGCCTCAACTTATTTTTTTAAAC  987

seq1  ACATTTTATTTTTTAACAGAGGAGGAATAGTGTAGCCTTGTTAATTATCA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATTTTTTAACAGAGGAGGAATAGTGTAGCCTTGTTAATTATCA  1037

seq1  AGAAGTGGCATTAACAAAGAACTACCTAACATTCTCAACAAGTTATATTT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGGCATTAACAAAGAACTACCTAACATTCTCAACAAGTTATATTT  1087

seq1  AATTTTGGCAAGGAATTC  1109
      ||||||||||||||||||
seq2  AATTTTGGCAAGGAATTC  1105


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