BAC Information

Click to search

BAC

Clone NameB6Ng01-290G01
Chromosome15 (Build37)
Map Location 56,056,549 - 56,057,715
singlet/doubletsinglet
Overlap genenone
Upstream geneDepdc6, Col14a1, Mrpl13, Mtbp, Sntb1, LOC665348, LOC100039908, Hba-ps3
Downstream geneHas2, EG594843, LOC435442, LOC100040067, LOC100039984
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290G01.bB6Ng01-290G01.g
ACCGA087534GA087535
length1,2001,148
definitionB6Ng01-290G01.b B6Ng01-290G01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttattcgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatccttttccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtccttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggacttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagactttttgcaatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
gatggggattgcatcgaatctgtagattgcttttggcaagatagccattt
ttacaatgtttatcctgccaatccatgagcatgggaggtctttccaactt
ctgagatcatctttaatttctttcttcagagatttgaagtttttatcgta
cagatctttcacctccttagttagagtcaccccaagatattttatattat
ttgtgactattgagaaggtgttgtttccctatttcttctcagcctgttta
tctttgtatagagaaaggccattgacttgtttggagttaattttatatcc
agctacttccacccgaggctgtttatcaggtttaggagtcctctgggtga
gaatttctagggtgcacttatatatgctttcattcatctgcaaggggaat
tttgggacttccctctgtcctacgaatatgtgagatgaccaccacgtcgg

gaattcaaacacattgagaaaaaatgaattaacaggcgtagaacccggaa
gcaattattttcatttcaaagtgaaaatctgtgtatccagatgtcaaaaa
ggctggagagcaaaagggatggaaaaactacagccagaaagtgtgagact
ggggcagcagggaagatgagcagcacgtgccttcttcctccaggattgaa
cagctgtagggagatgctaacgtttcctttctggagctagctcggaatta
actaaaagtgccaaaaataaagatgaaaggaaaaatatgtagacattaaa
actgattatctttccccaaataaaacagacgtctggagaaaggtcaaaga
aaccgaccggaagacagattgggtggtcccaggagagcctgtgagtcgtc
atgctgaatagtacaagcttttgaaagaaactattaaaatgaagtaattc
agattgcttgtctcgtctcagtggtgtgttatctgatggtcttaatgaga
aggatctaggggaaaaatgagtaagggaaagaggaacaacaacaacaaca
acaacaaaaaccccttagtcttgcactaaggatttctatgtgataaaaag
taaaagaaatatcaatgatggtacacaagcaggaatcaaaagtttcacag
cgttccattcttatagagggccaccaccatgcatttggatgtctcaagag
aggatgggataggtagctaatgaggtgcagtcactgatatgagaagtcag
atttggtggaggcaaaactataaagagcattagcgagtagaaatattgga
ggctcagtgttggaggtagcattacaatttccaatggaaaggagcattag
aaaattaatatccagctttcataggaaggtgatggataaagggtagttga
atataggagaaatcaagactatttaccagtgctatggaaaagatattttc
ttcaattcattaaaattaagtaattaaagagaagtttctattctattgat
aacacagcataccagaaggacagggtagaaatcattagataaaacacaat
gcagttgttgttctagggaagaatcagtccattaccatattttatatatc
tgcattagaagttatccgatcttagtaaatattttactcagtaccata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_56056549_56057715
seq2: B6Ng01-290G01.g_61_1208

seq1  GAATTCAAACACATTGAGAAAAAATGAATTAACAGGCGTAGAACCCGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACACATTGAGAAAAAATGAATTAACAGGCGTAGAACCCGGAA  50

seq1  GCAATTATTTTCATTTCAAAGTGAAAATCTGTGTATCCAGATGTCAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTTTCATTTCAAAGTGAAAATCTGTGTATCCAGATGTCAAAAA  100

seq1  GGCTGGAGAGCAAAAGGGATGGAAAAACTACAGCCAGAAAGTGTGAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGCAAAAGGGATGGAAAAACTACAGCCAGAAAGTGTGAGACT  150

seq1  GGGGCAGCAGGGAAGATGAGCAGCACGTGCCTTCTTCCTCCAGGATTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCAGGGAAGATGAGCAGCACGTGCCTTCTTCCTCCAGGATTGAA  200

seq1  CAGCTGTAGGGAGATGCTAACGTTTCCTTTCTGGAGCTAGCTCGGAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTAGGGAGATGCTAACGTTTCCTTTCTGGAGCTAGCTCGGAATTA  250

seq1  ACTAAAAGTGCCAAAAATAAAGATGAAAGGAAAAATATGTAGACATTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAGTGCCAAAAATAAAGATGAAAGGAAAAATATGTAGACATTAAA  300

seq1  ACTGATTATCTTTCCCCAAATAAAACAGACGTCTGGAGAAAGGTCAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATTATCTTTCCCCAAATAAAACAGACGTCTGGAGAAAGGTCAAAGA  350

seq1  AACCGACCGGAAGACAGATTGGGTGGTCCCAGGAGAGCCTGTGAGTCGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGACCGGAAGACAGATTGGGTGGTCCCAGGAGAGCCTGTGAGTCGTC  400

seq1  ATGCTGAATAGTACAAGCTTTTGAAAGAAACTATTAAAATGAAGTAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGAATAGTACAAGCTTTTGAAAGAAACTATTAAAATGAAGTAATTC  450

seq1  AGATTGCTTGTCTCGTCTCAGTGGTGTGTTATCTGATGGTCTTAATGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGCTTGTCTCGTCTCAGTGGTGTGTTATCTGATGGTCTTAATGAGA  500

seq1  AGGATCTAGGGGAAAAATGAGTAAGGGAAAGAGGAACAACAACAACAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTAGGGGAAAAATGAGTAAGGGAAAGAGGAACAACAACAACAACA  550

seq1  ACAACAAAAACCCCTTAGTCTTGCACTAAGGATTTCTATGTGATAAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAAAACCCCTTAGTCTTGCACTAAGGATTTCTATGTGATAAAAAG  600

seq1  TAAAAGAAATATCAATGATGGTACACAAGCAGGAATCAAAAGTTTCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAATATCAATGATGGTACACAAGCAGGAATCAAAAGTTTCACAG  650

seq1  CGTTCCATTCTTATAGAGGGCCACCACCATGCATTTGGATGTCTCAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCATTCTTATAGAGGGCCACCACCATGCATTTGGATGTCTCAAGAG  700

seq1  AGGATGGGATAGGTAGCTAATGAGGTGCAGTCACTGATATGAGAAGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGGATAGGTAGCTAATGAGGTGCAGTCACTGATATGAGAAGTCAG  750

seq1  ATTTGGTGGAGGCAAAACTATAAAGAGCATTAGCGAGTAGAAATATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTGGAGGCAAAACTATAAAGAGCATTAGCGAGTAGAAATATTGGA  800

seq1  GGCTCAGTGTTGGAGGTAGCATTACAATTTCCAATGGAAAGGAGCATTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGTGTTGGAGGTAGCATTACAATTTCCAATGGAAAGGAGCATTAG  850

seq1  AAAATTAATATCCAGCTTTCATAGGAAGGTGATGGAT-AAGGGTAGTTGA  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAATTAATATCCAGCTTTCATAGGAAGGTGATGGATAAAGGGTAGTTGA  900

seq1  ATATAGGAGAAATCAAGACTAATTACCAGTGCTATGGAAAAGATATTTTC  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATATAGGAGAAATCAAGACTATTTACCAGTGCTATGGAAAAGATATTTTC  950

seq1  TTCAAATTCATTAAAATTAAGTAAATAAAAGAGGAAGTTTCCAATTCTAT  999
      ||| |||||||||||||||||| ||| ||||| ||||||| | |||||||
seq2  TTC-AATTCATTAAAATTAAGT-AATTAAAGA-GAAGTTT-CTATTCTAT  996

seq1  TGAATAACACAGCATACCAGAAGGGACAAGGGTAGAAACCATAAGATTAA  1049
      || ||||||||||||||||||| |||| |||||||||| ||| ||| |||
seq2  TG-ATAACACAGCATACCAGAA-GGAC-AGGGTAGAAATCATTAGA-TAA  1042

seq1  AACACCATTGGAAAGTTGTGGTTCTAGGGGAAAGAATCAGGTTCATAAAT  1099
      ||||| ||     |||||| |||||||||  |||||||| || ||| |  
seq2  AACACAAT---GCAGTTGTTGTTCTAGGG--AAGAATCA-GTCCATTACC  1086

seq1  ATATTTTATTATTATCTAGAATATAAAATTTATCAGAATTCTTAGTAAAT  1149
      |||||||||   ||||| | || || || ||||| ||  |||||||||||
seq2  ATATTTTAT--ATATCT-GCAT-TAGAAGTTATCCGA--TCTTAGTAAAT  1130

seq1  ATTTTACTAAGTACAATA  1167
      |||||||| ||||| |||
seq2  ATTTTACTCAGTACCATA  1148