BAC Information

Click to search

BAC

Clone NameB6Ng01-291P03
Chromosome15 (Build37)
Map Location 44,347,668 - 44,473,545
singlet/doubletdoublet
Overlap genePkhd1l1, Ebag9
Upstream geneTtc35, LOC100039288, Tmem74, LOC100039309, Trhr, LOC665041, Nudcd1, Eny2
Downstream gene5730410E15Rik, A930017M01Rik, EG432950, Kcnv1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-291P03.bB6Ng01-291P03.g
ACCGA088706GA088707
length1,0031,063
definitionB6Ng01-291P03.b B6Ng01-291P03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,347,668 - 44,348,670)(44,472,472 - 44,473,545)
sequence
gaattccagccaaatgttcaggtgactgtgggtttacatgggatgccatg
attactcccctgatcttgacaacaacaccttccgaaggtaagctttggtt
ttaaccttaaatacaaggtgctggatagataaaaaaatatatttaaaaat
aggctctgtggtggtactacccttcccatccctgacagtgacttttagta
tggtttaaaatctttttcttgataaagttctgctgatttcttttgaagaa
ctagcctttagtgtttcttgtaattttttattccattgattttaaatgtc
attattttgatttgctgttgttacccatactcatgtttgtacctcaagtt
tattcattttcactatttggcagtcaaatatctcacagtttatttataaa
ttctcatgttgaaaacaaaacaaaaaaagaaaaatataacctgtgataat
gaactttaaatatttattattgtcactaactatggcaagaaaacctctca
atatagtgagaactatttatcagctgaaactatggaaaagcactcattac
ttacttggaaaaaaatatatgaagccaaaatattccattgatatctctat
tctctacttttacaaattacaatcagtctctataatttctctgtgacttt
gagacattgcttaatattcatctggtgagaattctccaacagaggtagca
actaggcaggcaataggatagctatagtgtaacaaaacaaaagaattgag
tattcacttcgagaaaacaaaacaattaatgccaagaactcatcacagcc
tagggtgtgttttattggggaaaatgtgattgtgttttttgtgtaaactc
ctaaaattgtaaataaacataaggaataaggtgtaaagggtgagttttta
accatagtgatgaattcagaaatcactaccttatatgcggtcttagtaat
tgaaagtaaactgtatctggtttgtgcccttgcatttgctaattttgtgt
gtg

gaattccactcaattttgagtactgaagatataatgaacacagtaactga
gaccgaagggaagacttggaggttaagagcactggctgctcttctagaag
tcctgagttcaattcgcagcacccacatgatggctataatgagatcctgt
acccttttctggcctgaaggtgtaaatgcagggaaaacattgtatacata
ataaacaaataataaatacagtaactgacaatgtggtctgtaactcaaaa
actccaaccacagttaaattcaacttagtgtgaaagcagaagctaaatgt
ttaaaagtatcaatgcaaagttattgattttgctatgaagtattgcctta
attcaaatatattatatatggcctatacactgtatatgacattttaaagc
ctcacaaaacgttaatcctaggcaataactgtgaagaaaataaaaaatct
tcaacaattccaaagccacagaaaatcagttatatttcaatggtggaaaa
aatttaatgtattttaaactgtgagatgtgctttgttttccataaaacac
aatatgcaattatttctttaaatcaaccaatatcacaaacaaaaatattt
atatcttggtttgtaatgaaatcagtaatgttatctagctaaaagaatag
gtaccctgcattatattatgtaagattaaaaacaaaacaaacccaaaaca
aaacaaaacaaaatagagaactcttcaagaatcacttaaaaaaaaaaaat
caatgaaaactgaaggctttccacatttgaaaatggcttttaaggatgga
cactgttaccatcttgacatctgtaatgaaagagaaaagctactgatcct
agttcttgtcacacaaagttgtcattgcagctgattttcaacatttatac
atgcaatatataaattacagctctgtataacattataatactgtttaaaa
gaaaataaggatatacaaatatttgataaataaattattgcattatgtat
tttcttaaaacccaattatcatattcctaatgttgtacaacaatgccagt
caaattatagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_44347668_44348670
seq2: B6Ng01-291P03.b_48_1050

seq1  GAATTCCAGCCAAATGTTCAGGTGACTGTGGGTTTACATGGGATGCCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCAAATGTTCAGGTGACTGTGGGTTTACATGGGATGCCATG  50

seq1  ATTACTCCCCTGATCTTGACAACAACACCTTCCGAAGGTAAGCTTTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCCCTGATCTTGACAACAACACCTTCCGAAGGTAAGCTTTGGTT  100

seq1  TTAACCTTAAATACAAGGTGCTGGATAGATAAAAAAATATATTTAAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTTAAATACAAGGTGCTGGATAGATAAAAAAATATATTTAAAAAT  150

seq1  AGGCTCTGTGGTGGTACTACCCTTCCCATCCCTGACAGTGACTTTTAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTGTGGTGGTACTACCCTTCCCATCCCTGACAGTGACTTTTAGTA  200

seq1  TGGTTTAAAATCTTTTTCTTGATAAAGTTCTGCTGATTTCTTTTGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAAAATCTTTTTCTTGATAAAGTTCTGCTGATTTCTTTTGAAGAA  250

seq1  CTAGCCTTTAGTGTTTCTTGTAATTTTTTATTCCATTGATTTTAAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTTTAGTGTTTCTTGTAATTTTTTATTCCATTGATTTTAAATGTC  300

seq1  ATTATTTTGATTTGCTGTTGTTACCCATACTCATGTTTGTACCTCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTGATTTGCTGTTGTTACCCATACTCATGTTTGTACCTCAAGTT  350

seq1  TATTCATTTTCACTATTTGGCAGTCAAATATCTCACAGTTTATTTATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTTTCACTATTTGGCAGTCAAATATCTCACAGTTTATTTATAAA  400

seq1  TTCTCATGTTGAAAACAAAACAAAAAAAGAAAAATATAACCTGTGATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGTTGAAAACAAAACAAAAAAAGAAAAATATAACCTGTGATAAT  450

seq1  GAACTTTAAATATTTATTATTGTCACTAACTATGGCAAGAAAACCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTAAATATTTATTATTGTCACTAACTATGGCAAGAAAACCTCTCA  500

seq1  ATATAGTGAGAACTATTTATCAGCTGAAACTATGGAAAAGCACTCATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTGAGAACTATTTATCAGCTGAAACTATGGAAAAGCACTCATTAC  550

seq1  TTACTTGGAAAAAAATATATGAAGCCAAAATATTCCATTGATATCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGAAAAAAATATATGAAGCCAAAATATTCCATTGATATCTCTAT  600

seq1  TCTCTACTTTTACAAATTACAATCAGTCTCTATAATTTCTCTGTGACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACTTTTACAAATTACAATCAGTCTCTATAATTTCTCTGTGACTTT  650

seq1  GAGACATTGCTTAATATTCATCTGGTGAGAATTCTCCAACAGAGGTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATTGCTTAATATTCATCTGGTGAGAATTCTCCAACAGAGGTAGCA  700

seq1  ACTAGGCAGGCAATAGGATAGCTATAGTGTAACAAAACAAAAGAATTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCAGGCAATAGGATAGCTATAGTGTAACAAAACAAAAGAATTGAG  750

seq1  TATTCACTTCGAGAAAACAAAACAATTAATGCCAAGAACTCATCACAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCACTTCGAGAAAACAAAACAATTAATGCCAAGAACTCATCACAGCC  800

seq1  TAGGGTGTGTTTTATTGGGGAAAATGTGATTGTGTTTTTTGTGTAAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGTGTTTTATTGGGGAAAATGTGATTGTGTTTTTTGTGTAAACTC  850

seq1  CTAAAATTGTAAATAAACATAAGGAATAAGGTGTAAAGGGTGAGTTTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTGTAAATAAACATAAGGAATAAGGTGTAAAGGGTGAGTTTTTA  900

seq1  ACCATAGTGATGAATTCAGAAATCACTACCTTATATGCGGTCTTAGTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAGTGATGAATTCAGAAATCACTACCTTATATGCGGTCTTAGTAAT  950

seq1  TGAAAGTAAACTGTATCTGGTTTGTGCCCTTGCATTTGCTAATTTTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTAAACTGTATCTGGTTTGTGCCCTTGCATTTGCTAATTTTGTGT  1000

seq1  GTG  1003
      |||
seq2  GTG  1003


seq1: chr15_44472472_44473545
seq2: B6Ng01-291P03.g_69_1131 (reverse)

seq1  TTTCTATAATTTGAACTGGCATTGTTTGGTACAACATTAAGGAATATGAT  50
      ||||||||||||| ||||||||||||  |||||||||| |||||||||||
seq2  TTTCTATAATTTG-ACTGGCATTGTT--GTACAACATT-AGGAATATGAT  46

seq1  AATTTGGGTTTTTAAGAAAATAACATTAAATGCAATAATTTTATTTATCA  100
      ||||  || |||||||||||| ||||  |||||||||| |||||||||||
seq2  AATT--GGGTTTTAAGAAAAT-ACAT--AATGCAATAA-TTTATTTATCA  90

seq1  AATATTTTGTATATCCTTATTTTCTTTTAAACAGTATTATAATGTTATAC  150
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATA-TTTGTATATCCTTATTTTCTTTTAAACAGTATTATAATGTTATAC  139

seq1  AGAGCTGTAATTTATATATTGCATGTATAAATGTTGAAAATCAGCTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGTAATTTATATATTGCATGTATAAATGTTGAAAATCAGCTGCAA  189

seq1  TGACAACTTTGTGTGACAAGAACTAGGATCAGTAGCTTTTCTCTTTCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTTTGTGTGACAAGAACTAGGATCAGTAGCTTTTCTCTTTCATT  239

seq1  ACAGATGTCAAGATGGTAACAGTGTCCATCCTTAAAAGCCATTTTCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGTCAAGATGGTAACAGTGTCCATCCTTAAAAGCCATTTTCAAAT  289

seq1  GTGGAAAGCCTTCAGTTTTCATTGATTTTTTTTTTTTAAGTGATTCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGCCTTCAGTTTTCATTGATTTTTTTTTTTTAAGTGATTCTTGA  339

seq1  AGAGTTCTCTATTTTGTTTTGTTTTGTTTTGGGTTTGTTTTGTTTTTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCTCTATTTTGTTTTGTTTTGTTTTGGGTTTGTTTTGTTTTTAAT  389

seq1  CTTACATAATATAATGCAGGGTACCTATTCTTTTAGCTAGATAACATTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACATAATATAATGCAGGGTACCTATTCTTTTAGCTAGATAACATTAC  439

seq1  TGATTTCATTACAAACCAAGATATAAATATTTTTGTTTGTGATATTGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTCATTACAAACCAAGATATAAATATTTTTGTTTGTGATATTGGTT  489

seq1  GATTTAAAGAAATAATTGCATATTGTGTTTTATGGAAAACAAAGCACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAGAAATAATTGCATATTGTGTTTTATGGAAAACAAAGCACATC  539

seq1  TCACAGTTTAAAATACATTAAATTTTTTCCACCATTGAAATATAACTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTTTAAAATACATTAAATTTTTTCCACCATTGAAATATAACTGAT  589

seq1  TTTCTGTGGCTTTGGAATTGTTGAAGATTTTTTATTTTCTTCACAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGGCTTTGGAATTGTTGAAGATTTTTTATTTTCTTCACAGTTAT  639

seq1  TGCCTAGGATTAACGTTTTGTGAGGCTTTAAAATGTCATATACAGTGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGGATTAACGTTTTGTGAGGCTTTAAAATGTCATATACAGTGTAT  689

seq1  AGGCCATATATAATATATTTGAATTAAGGCAATACTTCATAGCAAAATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATATATAATATATTTGAATTAAGGCAATACTTCATAGCAAAATCA  739

seq1  ATAACTTTGCATTGATACTTTTAAACATTTAGCTTCTGCTTTCACACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTGCATTGATACTTTTAAACATTTAGCTTCTGCTTTCACACTAA  789

seq1  GTTGAATTTAACTGTGGTTGGAGTTTTTGAGTTACAGACCACATTGTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAATTTAACTGTGGTTGGAGTTTTTGAGTTACAGACCACATTGTCAG  839

seq1  TTACTGTATTTATTATTTGTTTATTATGTATACAATGTTTTCCCTGCATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGTATTTATTATTTGTTTATTATGTATACAATGTTTTCCCTGCATT  889

seq1  TACACCTTCAGGCCAGAAAAGGGTACAGGATCTCATTATAGCCATCATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTCAGGCCAGAAAAGGGTACAGGATCTCATTATAGCCATCATGT  939

seq1  GGGTGCTGCGAATTGAACTCAGGACTTCTAGAAGAGCAGCCAGTGCTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCGAATTGAACTCAGGACTTCTAGAAGAGCAGCCAGTGCTCTT  989

seq1  AACCTCCAAGTCTTCCCTTCGGTCTCAGTTACTGTGTTCATTATATCTTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCAAGTCTTCCCTTCGGTCTCAGTTACTGTGTTCATTATATCTTC  1039

seq1  AGTACTCAAAATTGAGTGGAATTC  1074
      ||||||||||||||||||||||||
seq2  AGTACTCAAAATTGAGTGGAATTC  1063


| Home | SequenceCutter | Blast | Download |