BAC Information

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BAC

Clone NameB6Ng01-292G13
Chromosome11 (Build37)15 (Build37)
Map Location 51,829,935 - 51,830,0045,093,251 - 5,093,556
singlet/doubletsingletsinglet
Overlap geneCdkl3
Upstream geneOlfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b
Downstream geneLOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292G13.bB6Ng01-292G13.g
ACCGA089059GA089060
length1,037306
definitionB6Ng01-292G13.b B6Ng01-292G13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(51,829,935 - 51,830,004)(5,093,251 - 5,093,556)
sequence
gaattcttagtctttacattgtttgagtacatatgccccagcctgtaata
tactctaataagtcatatatgtaatttataatatgtatattatatgataa
ctttattaatgcacatgttattggatattatactatatataataaaatat
gttatataattattaaatgatacataatatataagatttaatacagtagc
ttactgttgcaggatatttgatcacattgtgttatttactgaaaagccct
gtttctagttgtggtgtggctcagccttaaaacacatatttagtccctct
ggctggaatactgatatccttttagtatgtacctttaatcccaaataatg
agggtgaagcaattaagcacccatgtttgaagtatgtctaattgagtggc
agacaatattgatgaatcagagaaagatttgacaggatagaatgtgtcca
cctttaatgagaagagagagaaaagagaagctacttaagagagtagtgca
ggaagagaagaaaatgaagggaaaaaaaaggaaacagttttaccaggaca
gttttacagaaataggttgaagaaagagaacaagctagacacaggttaat
acagaattacccagagagtaagaaggagcagaatgattaaaacacagcag
agaaattcattcaggagaggctgagaaagaaagccagattgaatcagtca
ggttggaaatgagtttgatctggaacaactgagttgaatcagagagccag
gatcaaaaataactagttaggaatgagttgctcagcagtgagtctaaaaa
actgaaattattctaggcctagattagattgtatagagcctaaaagctcc
caggactaggactaggcctatgttagcagactgaagcagtcagccaagaa
gatgacaattattacaggagaacaaaggttacatttacatttagtgctca
acgtagttggaaaggaacatccacttgattggagaagaaaacccacacaa
ttgcagaaagcaaaggatattctgacaaaaacattgc
acatagctcacacacattccacaggggaaatttgacggtagcaaatttcc
taggaagtctctccaggatgtgcggtgtcccatagtaatttactggctca
gagtttttttttgtttaaagcagtggtaagtattaaaagtgcaagtgaaa
acacccttggcttccagatgacaccgagatgagatgaaaatcaagatttc
aagtcagtggtagggcggtgtcccctgtcttgtttcaaagcacgccgcgc
tatccccgggcaacgtgtaagcaagcatcgtcctcctgggaattacgggg
gtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_51829935_51830004
seq2: B6Ng01-292G13.b_252_449 (reverse)

seq1  CTGCCACTCAATTAGACAGCACTTTCAAACTTGGGTGCTT----------  40
      ||||||||||||||||||  || ||||||| |||||||||          
seq2  CTGCCACTCAATTAGACA-TAC-TTCAAACATGGGTGCTTAATTGCTTCA  48

seq1  -CCTC--CAAGTGTGATCAAATAT-CCTGCAACA----------------  70
       ||||   |  || ||| |||  | | | | | |                
seq2  CCCTCATTATTTGGGATTAAAGGTACATACTAAAAGGATATCAGTATTCC  98

seq1  --------------------------------------------------  70
                                                        
seq2  AGCCAGAGGGACTAAATATGTGTTTTAAGGCTGAGCCACACCACAACTAG  148

seq1  --------------------------------------------------  70
                                                        
seq2  AAACAGGGCTTTTCAGTAAATAACACAATGTGATCAAATATCCTGCAACA  198

seq1: chr15_5093251_5093556
seq2: B6Ng01-292G13.g_72_377

seq1  ACATAGCTCACACACATTCCACAGGGGAAATTTGACGGTAGCAAATTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGCTCACACACATTCCACAGGGGAAATTTGACGGTAGCAAATTTCC  50

seq1  TAGGAAGTCTCTCCAGGATGTGCGGTGTCCCATAGTAATTTACTGGCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTCTCTCCAGGATGTGCGGTGTCCCATAGTAATTTACTGGCTCA  100

seq1  GAGTTTTTTTTTGTTTAAAGCAGTGGTAAGTATTAAAAGTGCAAGTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTTTTTTGTTTAAAGCAGTGGTAAGTATTAAAAGTGCAAGTGAAA  150

seq1  ACACCCTTGGCTTCCAGATGACACCGAGATGAGATGAAAATCAAGATTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTTGGCTTCCAGATGACACCGAGATGAGATGAAAATCAAGATTTC  200

seq1  AAGTCAGTGGTAGGGCGGTGTCCCCTGTCTTGTTTCAAAGCACGCCGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGTGGTAGGGCGGTGTCCCCTGTCTTGTTTCAAAGCACGCCGCGC  250

seq1  TATCCCCGGGCAACGTGTAAGCAAGCATCGTCCTCCTGGGAATTACGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCCGGGCAACGTGTAAGCAAGCATCGTCCTCCTGGGAATTACGGGG  300

seq1  GTGGGG  306
      ||||||
seq2  GTGGGG  306