BAC Information

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BAC

Clone NameB6Ng01-293D22
Chromosome15 (Build37)
Map Location 12,860,181 - 13,002,814
singlet/doubletdoublet
Overlap geneRnasen, Cdh6
Upstream geneSub1, LOC100040027, Zfr, LOC100040052, LOC100040066, Mtmr12, LOC100039846, Golph3, Pdzd2, LOC100040109, 6030458C11Rik
Downstream geneLOC100039907, LOC666686, LOC239338, LOC666708
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293D22.bB6Ng01-293D22.g
ACCGA089674GA089675
length1,046917
definitionB6Ng01-293D22.b B6Ng01-293D22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,860,181 - 12,861,206)(13,001,902 - 13,002,814)
sequence
gaattcccccccccccccccgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgttcgttcagtatctataataaacatctagattgtggtgc
atttaattctgaagatggattgtctcaagagtgaaaggcccatgctgaag
gacttcaggtgccagttgctggtgtagagagctgcctaggcttgtaaatt
gaaggcaggagtacgggccagtcttctccgaggtctgttgtgcttcacag
aagaacctgtgggcacaatatgctaatgcttcgagaaccagctaaaggag
tgggggacactgaatgcacaggctcagagtgaagggtcccaggattctca
agcttgagagaggttccaggagaggttagaggcctctagccaagtggaag
tcagcggaagtggcttaccgttcagaggcagggagggtagttagtgggga
cagcagccagcgctgccagccagggtcttgcatctgtagaacctacactg
agagttttgcattgactttcttggagagtgttttcattgattgtttgtat
gaatgcactatcatttattgaaggagagtgggattcttttttccagttat
aacaatagagtccacccccacttctgatgcatatagtcagctataaaacg
gtacttggaaaaatgactaattttgagacagacatcccccaagaggatga
taggagtgaaattgcttaaatgcaggaaagtaaattggcatcgtgtccca
tcgttaaagaagcttctacctttcggtccttgattccatttctaggaacc
caacttaaggttctgggtactttgggttctgagctacagctcacgtgctg
caattagtcgtgaactactttgatatattactagcgtatttcagtaatgt
tgaacaggcacaggaaattagttaaagtgaacggctggtcccaagggatc
ggcaaacgcatttctgtaagggaccagctgcgccagatttagtcttcgag
ggtcaataatcctgtcctcagttacactaaattcttgacatgtggc
gaattcttcatattcttcataaacacagttcaaggaagaaatcagacagg
agcactaagatttaatgactgtcattccatgtgccagagacattgttcat
caccaatatccaatctaaggtgaccttgcaacattcactcaatcattgtt
tgcaaccattacttattaaggatgtctcaggtgccaggatgctgggtctt
gagtctactgaagtaaaggaaccagaccaatttcatgccttcttccatga
tgtgatctacttaagaacacggctataaaatgagtcatttaaaataagaa
tatgctgatggttccatgggaaataagttgagggtacacatgaggagact
cttagactagcaacatgaggaaggaaggcatcccagggaggaacagatga
agcagtcctggcatgtgagctgggttagccaattaaagattctaagcagt
atttatgccaaaggggctacctggggaaaggcctagctatgaagtatgtt
ctcaaaaaaactacatgaaatcacaatgtgatgagagtaaagccttgtct
agggaggatgctggcaaggaaagctagtgagaagagcaaaggatgccatg
gtaaagggctttgtgttaaggaaggatttaaagagaataacggcatcttc
catgtcaacatggtcataaggtcagtctcgtgacaggaaaagagggagaa
ggaagcatgcgtgagtacacttggacggcagaaatacatcaaagggaagt
ggtgttgacaacagaaattgggtgtgtcaagatatagacaggaggtagca
agacagctgcagagttgtcctgtgtttcagaatggctctggtgtccctgg
tggccctttacagatatgaggcacacaagaggagggaagtatttgtaggg
tttgggtgatgaaggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_12860181_12861206
seq2: B6Ng01-293D22.b_47_1092

seq1  GAATTCCCCCCCCCCCCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCCCCCCCCCCCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTTCGTTCAGTATCTATAATAAACATCTAGATTGTGGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTCGTTCAGTATCTATAATAAACATCTAGATTGTGGTGC  100

seq1  ATTTAATTCTGAAGATGGATTGTCTCAAGAGTGAAAGGCCCATGCTGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCTGAAGATGGATTGTCTCAAGAGTGAAAGGCCCATGCTGAAG  150

seq1  GACTTCAGGTGCCAGTTGCTGGTGTAGAGAGCTGCCTAGGCTTGTAAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGGTGCCAGTTGCTGGTGTAGAGAGCTGCCTAGGCTTGTAAATT  200

seq1  GAAGGCAGGAGTACGGGCCAGTCTTCTCCGAGGTCTGTTGTGCTTCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGGAGTACGGGCCAGTCTTCTCCGAGGTCTGTTGTGCTTCACAG  250

seq1  AAGAACCTGTGGGCACAATATGCTAATGCTTCGAGAACCAGCTAAAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTGTGGGCACAATATGCTAATGCTTCGAGAACCAGCTAAAGGAG  300

seq1  TGGGGGACACTGAATGCACAGGCTCAGAGTGAAGGGTCCCAGGATTCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACACTGAATGCACAGGCTCAGAGTGAAGGGTCCCAGGATTCTCA  350

seq1  AGCTTGAGAGAGGTTCCAGGAGAGGTTAGAGGCCTCTAGCCAAGTGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAGAGAGGTTCCAGGAGAGGTTAGAGGCCTCTAGCCAAGTGGAAG  400

seq1  TCAGCGGAAGTGGCTTACCGTTCAGAGGCAGGGAGGGTAGTTAGTGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGGAAGTGGCTTACCGTTCAGAGGCAGGGAGGGTAGTTAGTGGGGA  450

seq1  CAGCAGCCAGCGCTGCCAGCCAGGGTCTTGCATCTGTAGAACCTACACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCCAGCGCTGCCAGCCAGGGTCTTGCATCTGTAGAACCTACACTG  500

seq1  AGAGTTTTGCATTGACTTTCTTGGAGAGTGTTTTCATTGATTGTTTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTTGCATTGACTTTCTTGGAGAGTGTTTTCATTGATTGTTTGTAT  550

seq1  GAATGCACTATCATTTATTGAAGGAGAGTGGGATTCTTTTTTCCAGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACTATCATTTATTGAAGGAGAGTGGGATTCTTTTTTCCAGTTAT  600

seq1  AACAATAGAGTCCACCCCCACTTCTGATGCATATAGTCAGCTATAAAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATAGAGTCCACCCCCACTTCTGATGCATATAGTCAGCTATAAAACG  650

seq1  GTAC-TGGAAAAATGACTAATTTTGAGACAGACATCCCCCAAGAGGATGA  699
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGAAAAATGACTAATTTTGAGACAGACATCCCCCAAGAGGATGA  700

seq1  TAGGAGTG-AATTGCTTAAATGCAGGAAAGTAAATTGGCATCGTGTCCCA  748
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTGAAATTGCTTAAATGCAGGAAAGTAAATTGGCATCGTGTCCCA  750

seq1  TCGTTAAAGAAGCTTCTACCTTTCGGTCC-TGATTCCATTTCTAGGAACC  797
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCGTTAAAGAAGCTTCTACCTTTCGGTCCTTGATTCCATTTCTAGGAACC  800

seq1  CAACTTAAGGTTCTGGGTAC-TTGGGTTCTGAGCTACAGCTCACGTGCTG  846
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CAACTTAAGGTTCTGGGTACTTTGGGTTCTGAGCTACAGCTCACGTGCTG  850

seq1  C-AGTAGTCGTG-ACTAC-TTGATATA-TACTAGCGTATTTCAGTAATGT  892
      | | |||||||| ||||| |||||||| ||||||||||||||||||||||
seq2  CAATTAGTCGTGAACTACTTTGATATATTACTAGCGTATTTCAGTAATGT  900

seq1  GGAACA-GCACAGGAA--TAGTT-AAGTGAAC-GCT-GTCCCAA-GGATC  935
       ||||| |||||||||  ||||| |||||||| ||| ||||||| |||||
seq2  TGAACAGGCACAGGAAATTAGTTAAAGTGAACGGCTGGTCCCAAGGGATC  950

seq1  GGCAGACGCA-TTCTGTAAAGGACCAGCTGCG-CAGATTTAGTCTTCGAG  983
      |||| ||||| |||||||| |||||||||||| |||||||||||||||||
seq2  GGCAAACGCATTTCTGTAAGGGACCAGCTGCGCCAGATTTAGTCTTCGAG  1000

seq1  GGTC-ATAAT-CTGT-CTCAGTTACACTAAATTC-TGACATTGTGGC  1026
      |||| ||||| |||| |||||||||||||||||| ||||| ||||||
seq2  GGTCAATAATCCTGTCCTCAGTTACACTAAATTCTTGACA-TGTGGC  1046

seq1: chr15_13001902_13002814
seq2: B6Ng01-293D22.g_66_982 (reverse)

seq1  GACC-TCATCACC--AACCCTACAAATACTTCCCTCCTCTTGTGTGCCTC  47
      |||| ||||||||  |||||||||||||||||||||||||||||||||||
seq2  GACCTTCATCACCCAAACCCTACAAATACTTCCCTCCTCTTGTGTGCCTC  50

seq1  ATATCTGT-AAGGGCCACCAGGGACACCAGAGCCATTCTGAAACACAGGA  96
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGTAAAGGGCCACCAGGGACACCAGAGCCATTCTGAAACACAGGA  100

seq1  CAACTCTGCAGCTGTCTTGCTACCTCCTGTCTATATCTTGACACACCCAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGCAGCTGTCTTGCTACCTCCTGTCTATATCTTGACACACCCAA  150

seq1  TTTCTGTTGTCAACACCACTTCCCTTTGATGTATTTCTGCCGTCCAAGTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGTCAACACCACTTCCCTTTGATGTATTTCTGCCGTCCAAGTG  200

seq1  TACTCACGCATGCTTCCTTCTCCCTCTTTTCCTGTCACGAGACTGACCTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACGCATGCTTCCTTCTCCCTCTTTTCCTGTCACGAGACTGACCTT  250

seq1  ATGACCATGTTGACATGGAAGATGCCGTTATTCTCTTTAAATCCTTCCTT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCATGTTGACATGGAAGATGCCGTTATTCTCTTTAAATCCTTCCTT  300

seq1  AACACAAAGCCCTTTACCATGGCATCCTTTGCTCTTCTCACTAGCTTTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAGCCCTTTACCATGGCATCCTTTGCTCTTCTCACTAGCTTTCC  350

seq1  TTGCCAGCATCCTCCCTAGACAAGGCTTTACTCTCATCACATTGTGATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCATCCTCCCTAGACAAGGCTTTACTCTCATCACATTGTGATTT  400

seq1  CATGTAGTTTTTTTGAGAACATACTTCATAGCTAGGCCTTTCCCCAGGTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTTTTTTTGAGAACATACTTCATAGCTAGGCCTTTCCCCAGGTA  450

seq1  GCCCCTTTGGCATAAATACTGCTTAGAATCTTTAATTGGCTAACCCAGCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTTGGCATAAATACTGCTTAGAATCTTTAATTGGCTAACCCAGCT  500

seq1  CACATGCCAGGACTGCTTCATCTGTTCCTCCCTGGGATGCCTTCCTTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCCAGGACTGCTTCATCTGTTCCTCCCTGGGATGCCTTCCTTCCT  550

seq1  CATGTTGCTAGTCTAAGAGTCTCCTCATGTGTACCCTCAACTTATTTCCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGCTAGTCTAAGAGTCTCCTCATGTGTACCCTCAACTTATTTCCC  600

seq1  ATGGAACCATCAGCATATTCTTATTTTAAATGACTCATTTTATAGCCGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACCATCAGCATATTCTTATTTTAAATGACTCATTTTATAGCCGTG  650

seq1  TTCTTAAGTAGATCACATCATGGAAGAAGGCATGAAATTGGTCTGGTTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGTAGATCACATCATGGAAGAAGGCATGAAATTGGTCTGGTTCC  700

seq1  TTTACTTCAGTAGACTCAAGACCCAGCATCCTGGCACCTGAGACATCCTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCAGTAGACTCAAGACCCAGCATCCTGGCACCTGAGACATCCTT  750

seq1  AATAAGTAATGGTTGCAAACAATGATTGAGTGAATGTTGCAAGGTCACCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAATGGTTGCAAACAATGATTGAGTGAATGTTGCAAGGTCACCT  800

seq1  TAGATTGGATATTGGTGATGAACAATGTCTCTGGCACATGGAATGACAGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTGGATATTGGTGATGAACAATGTCTCTGGCACATGGAATGACAGT  850

seq1  CATTAAATCTTAGTGCTCCTGTCTGATTTCTTCCTTGAACTGTGTTTATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATCTTAGTGCTCCTGTCTGATTTCTTCCTTGAACTGTGTTTATG  900

seq1  AAGAATATGAAGAATTC  913
      |||||||||||||||||
seq2  AAGAATATGAAGAATTC  917