BAC Information

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BAC

Clone NameB6Ng01-293K18
Chromosome15 (Build37)
Map Location 100,248,573 - 100,249,671
singlet/doubletsinglet
Overlap geneSlc11a2
Upstream geneC230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik, Dip2b, Atf1, 4930478A21Rik, EG432981, Mettl7a, ENSMUSG00000058057, LOC554292, Ubie, Yghl1-4
Downstream geneEG432982, Letmd1, BC035295, Tcfcp2, Pou6f1, Dazap2, BC004728, Bin2, Ela1, Galnt6, Slc4a8, Scn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-293K18.bB6Ng01-293K18.g
ACCGA089996GA089997
length1,1901,117
definitionB6Ng01-293K18.b B6Ng01-293K18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcctggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggggcatgcagagatattccttctaaggt
gaaagataagttattgcacctggcccctcctacaaccaagaaagaagcac
aacgtttagtgggtctatttggattctggagacaacacatccctcacttg
ggtgtgttacttaggctctatttaccaagtgacttcggaaagctgctagc
tttgtgttggggcctggaaacatgagaaaggcccttcaacaggtccaggc
tgctgtgcatgctgctctaccacttggaccatatgacccagcagatcgaa
tggtacttgaaggtgtctgtggctgaataaaatgctgttgagctctgggc
aagtcctctgtagtgaatcacaaaaaaggctcttttgggtattcggatgc
aagcctctacattcactctgcaaaatcaaacttattctcccttttgaaca
cgctcttttgactcgcatattgggcctctaaggtaatact
gaattctttccacttgaatgactgggaaccaaactgctgttgttttcata
tttgcagacagagccgatcaagactgctagtgtatctccctccctgccca
ctccagagccttgaccctgtgaggcccatgcaagggaggcactgggcagc
ctcctttcctccttgctttaaggacagcgcactgcttttctgttaaaatc
ccaggctaatgtagcaatcggtctcagacttcccatcaaggatttctgac
aatcttcaggtatctgtcgatacctagtgggagtgaggggaaagaaacag
atccctgcggtagtaagtttagaattagtatttacattaaagggagcatg
ttgacccatacctgaattagagacaagtctggtctaccagtggtatatag
agacttggcttcacacacacacacacacacacactcactcacgtaaacct
gtggttcacacctacagtcactgggaggaccaaggaggaagaggcaggaa
gatcaaaaatttagaaattcaagctcaactttagctacctcgtaagccaa
atgccagtctggtgtacatgagactctgtctcaacaaagaaacaagatat
gacaatgttttagcctattttctcttatgaaaatgaatttgaggactggg
caataactcagccacacagtgcttacctagtgtgtacaaacccataggtt
tgatcacaatgcctctaatatacatgcacacacatgcatatataatatat
atatttacacacatacatatatatacacaaatacatacacacgtgtatat
atatatatatatatacacacaaacacactctcgagtgcacatacgcatgc
acacacacatgcatatatatatatacacacatacacacacatatacatat
atacacactcgtgagtgcacatacacacacacacacacacatacatacac
atgcactcacacaaacaaattacacacacacactcgggaagtgccacata
cacatgccacacacatacataattgcaaggcacatacacactaccacaca
gaaaggaactgtgatcatgaaaacaaaggattgaggaaagaaaaagggca
gggctatatggttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_100248573_100249671
seq2: B6Ng01-293K18.g_68_1184

seq1  GAATTCTTTCCACTTGAATGACTGGGAACCAAACTGCTGTTGTTTTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCACTTGAATGACTGGGAACCAAACTGCTGTTGTTTTCATA  50

seq1  TTTGCAGACAGAGCCGATCAAGACTGCTAGTGTATCTCCCTCCCTGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAGACAGAGCCGATCAAGACTGCTAGTGTATCTCCCTCCCTGCCCA  100

seq1  CTCCAGAGCCTTGACCCTGTGAGGCCCATGCAAGGGAGGCACTGGGCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAGCCTTGACCCTGTGAGGCCCATGCAAGGGAGGCACTGGGCAGC  150

seq1  CTCCTTTCCTCCTTGCTTTAAGGACAGCGCACTGCTTTTCTGTTAAAATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCCTCCTTGCTTTAAGGACAGCGCACTGCTTTTCTGTTAAAATC  200

seq1  CCAGGCTAATGTAGCAATCGGTCTCAGACTTCCCATCAAGGATTTCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTAATGTAGCAATCGGTCTCAGACTTCCCATCAAGGATTTCTGAC  250

seq1  AATCTTCAGGTATCTGTCGATACCTAGTGGGAGTGAGGGGAAAGAAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAGGTATCTGTCGATACCTAGTGGGAGTGAGGGGAAAGAAACAG  300

seq1  ATCCCTGCGGTAGTAAGTTTAGAATTAGTATTTACATTAAAGGGAGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTGCGGTAGTAAGTTTAGAATTAGTATTTACATTAAAGGGAGCATG  350

seq1  TTGACCCATACCTGAATTAGAGACAAGTCTGGTCTACCAGTGGTATATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCATACCTGAATTAGAGACAAGTCTGGTCTACCAGTGGTATATAG  400

seq1  AGACTTGGCTTCACACACACACACACACACACACTCACTCACGTAAACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGGCTTCACACACACACACACACACACACTCACTCACGTAAACCT  450

seq1  GTGGTTCACACCTACAGTCACTGGGAGGACCAAGGAGGAAGAGGCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTCACACCTACAGTCACTGGGAGGACCAAGGAGGAAGAGGCAGGAA  500

seq1  GATCAAAAATTTAGAAATTCAAGCTCAACTTTAGCTACCTCGTAAGCCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAAATTTAGAAATTCAAGCTCAACTTTAGCTACCTCGTAAGCCAA  550

seq1  ATGCCAGTCTGGTGTACATGAGACTCTGTCTCAACAAAGAAACAAGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGTCTGGTGTACATGAGACTCTGTCTCAACAAAGAAACAAGATAT  600

seq1  GACAATGTTTTAGCCTATTTTCTCTTATGAAAATGAATTTGAGGACTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGTTTTAGCCTATTTTCTCTTATGAAAATGAATTTGAGGACTGGG  650

seq1  CAATAACTCAGCCACACAGTGCTTACCTAGTGTGTACAAACCCATAGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACTCAGCCACACAGTGCTTACCTAGTGTGTACAAACCCATAGGTT  700

seq1  TGATCACAATGCCTCTAATATACATGCACACACATGCATATATAATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAATGCCTCTAATATACATGCACACACATGCATATATAATATAT  750

seq1  ATATTTACACACATACATATATATACACAAATACATACACACGTGTATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACACACATACATATATATACACAAATACATACACACGTGTATAT  800

seq1  ATATATATATATATACACACAAACACACTCTCGAGTGCACATACGCATGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATACACACAAACACACTCTCGAGTGCACATACGCATGC  850

seq1  ACACACACATGCATATATATATATACACACATACACACACATATACATAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATGCATATATATATATACACACATACACACACATATACATAT  900

seq1  ATACACACTCGTGAGTGCACATACACACACACACACACACATACATACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACTCGTGAGTGCACATACACACACACACACACACATACATACAC  950

seq1  ATGCACTCACACAAACAAA-TACACACACACACTCGGG-AGTG-CACATA  997
      ||||||||||||||||||| |||||||||||||||||| |||| ||||||
seq2  ATGCACTCACACAAACAAATTACACACACACACTCGGGAAGTGCCACATA  1000

seq1  CACATG-CACACACATACATA--TGCAA-GCACATACACAC--ACACACA  1041
      |||||| ||||||||||||||  ||||| ||||||||||||   ||||||
seq2  CACATGCCACACACATACATAATTGCAAGGCACATACACACTACCACACA  1050

seq1  GAAA-GAACTG---ACATGAAACAAAAAGA-TGAGGAAAGAAAAA-GGCA  1085
      |||| ||||||    |||||||  ||| || |||||||||||||| ||||
seq2  GAAAGGAACTGTGATCATGAAAACAAAGGATTGAGGAAAGAAAAAGGGCA  1100

seq1  GG---CTATGGTTTTCA  1099
      ||    |||||||||||
seq2  GGGCTATATGGTTTTCA  1117