BAC Information

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BAC

Clone NameB6Ng01-294A09
Chromosome15 (Build37)
Map Location 10,586,748 - 10,587,693
singlet/doubletsinglet
Overlap geneRai14
Upstream geneC230086A09Rik, Prlr, Agxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579
Downstream geneC1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars, LOC100039772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294A09.bB6Ng01-294A09.g
ACCGA090261GA090262
length1,197950
definitionB6Ng01-294A09.b B6Ng01-294A09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctagccagagcaattcgacaacaaaaggagatcaaggggataca
aattggaaaagatgaagtcaaaatatcactttttgcagatgatatgatag
tattcataagtgaccctaaaaattccacaagagaactccaaaatctgata
aacagcttcagtgaagtagctggatataaaattaactcaaacaagtcaat
ggcctttctctacacaaaggacaaacaggctgagagagaaattagggaaa
caacacccttctcaatagtcacaaataatataaaatatcttggcatgact
ctaactaaggaagtgaaagatctgtatgataagaacttcaagtctctgaa
gaaagaaattaaagaatatctcagaagatggaaagatctcccatgctcat
ggattggcaggatcaatatagtaaaaatggctatcttgccaaaagcaatc
tacagattcaatgcaatccccatcaaaattccaactcaattcttcaacga
attagaaagggcaatcggcagattcatctggagtaacaaaaaacctagga
tagcaaaaactcttctcaaggataaaagtacctctggtggaatcaccatg
cctgacctaaagcttaactacagagcaattgtgataaaaactgcatggta
ctggtatagtgacggacaagtagaccaatggaatagaattgaagacccag
agatgaacccacacacctatggtcacttgatctttgacaaggattctaaa
accatccagtgaaaaaaagacagcattttcatcaaatggtgctggcacaa
ctggcagttatcatgtagaagagtgcaaattaatccattcctatctcctt
gtactaaggtcaaatctaagtggatcaaggaactccacataaaaccagag
acagtgaaaattatagaggagaaagtgggaaaagccttgaagatatgggt
acagggggaaaattcctgagtagaaacagcaatggcttgtgctgtaggat
cgagaatcgacaaatgggacctcataaactgcaaagccttctgtagcaaa
gaacacgtcataagacaaaaagccaccaacagattgggaaggaatatttt
tacctatctaatccgacggtactaatatccaatatgtatttaagacttag
aaagtgatccgaatcgatatctaaattggtctcgatcacagaattct
gaattctttgagtttattgatgaacctgtgtagctgaaattgatggatac
agtgagagactctctcaaaaggtaaagttcagagcaaagaaacaagacag
ctgcctccatcaacccctgacctccacatcaacccctgacctccacactc
atgcccctgcatggacccacaagtacatatacatataacacatgcacact
agatggatggatggatggatggatggatggataagagcaaatatgctact
acattcatgttatagaaagaaaaattttaaaaaattaaataactacccaa
gttcaactcacaaaagcaaatgctgttaaatttctgatatggacttggca
cacggtcaatactttaaatattgttcactatagccaagacttatttaact
atggttcatcattttctagtaaagtcaggtgccaaatccgtccagtcttt
tgagctaggcatgatgttgagatgttgttcatacttatgacatcattttg
aacacatcttgttcaaagttcagaaacggtgagctgtttcagtaagtgtc
cctggaaaaccgaagaccctacagaacacactgagagaggcaagaagttt
tattagcagcttgagagatggcttacaggttaggagcatgtacccatgtc
aggcagctcagaactgcctatgactctggatccaaggaatcaatactctc
ttctggaccttgaaggcaactgtcctcgatctatctatctatctatctat
ctatctatctatctatctatctatctatctatctatctatcatctatcta
tctattatctatctatcatctatctatctatctatcatctatctataatc
tatctatctatcatctatctatcatctatctatctatcatctatctatct
atcaacatcgaccgatcatgtaatctatctatctatccaatcaatctatc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_10586748_10587693
seq2: B6Ng01-294A09.g_68_1017

seq1  GAATTCTTTGAGTTTATTGATGAACCTGTGTAGCTGAAATTGATGGATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGAGTTTATTGATGAACCTGTGTAGCTGAAATTGATGGATAC  50

seq1  AGTGAGAGACTCTCTCAAAAGGTAAAGTTCAGAGCAAAGAAACAAGACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAGACTCTCTCAAAAGGTAAAGTTCAGAGCAAAGAAACAAGACAG  100

seq1  CTGCCTCCATCAACCCCTGACCTCCACATCAACCCCTGACCTCCACACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCATCAACCCCTGACCTCCACATCAACCCCTGACCTCCACACTC  150

seq1  ATGCCCCTGCATGGACCCACAAGTACATATACATATAACACATGCACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCCTGCATGGACCCACAAGTACATATACATATAACACATGCACACT  200

seq1  AGATGGATGGATGGATGGATGGATGGATGGATAAGAGCAAATATGCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATGGATGGATGGATGGATGGATGGATAAGAGCAAATATGCTACT  250

seq1  ACATTCATGTTATAGAAAGAAAAATTTTAAAAAATTAAATAACTACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCATGTTATAGAAAGAAAAATTTTAAAAAATTAAATAACTACCCAA  300

seq1  GTTCAACTCACAAAAGCAAATGCTGTTAAATTTCTGATATGGACTTGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAACTCACAAAAGCAAATGCTGTTAAATTTCTGATATGGACTTGGCA  350

seq1  CACGGTCAATACTTTAAATATTGTTCACTATAGCCAAGACTTATTTAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGTCAATACTTTAAATATTGTTCACTATAGCCAAGACTTATTTAACT  400

seq1  ATGGTTCATCATTTTCTAGTAAAGTCAGGTGCCAAATCCGTCCAGTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTCATCATTTTCTAGTAAAGTCAGGTGCCAAATCCGTCCAGTCTTT  450

seq1  TGAGCTAGGCATGATGTTGAGATGTTGTTCATACTTATGACATCATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTAGGCATGATGTTGAGATGTTGTTCATACTTATGACATCATTTTG  500

seq1  AACACATCTTGTTCAAAGTTCAGAAACGGTGAGCTGTTTCAGTAAGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCTTGTTCAAAGTTCAGAAACGGTGAGCTGTTTCAGTAAGTGTC  550

seq1  CCTGGAAAACCGAAGACCCTACAGAACACACTGAGAGAGGCAAGAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAAACCGAAGACCCTACAGAACACACTGAGAGAGGCAAGAAGTTT  600

seq1  TATTAGCAGCTTGAGAGATGGCTTACAGGTTAGGAGCATGTACCCATGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGCAGCTTGAGAGATGGCTTACAGGTTAGGAGCATGTACCCATGTC  650

seq1  AGGCAGCTCAGAACTGCCTATGACTCTGGATCCAAGGAATCAATACTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCTCAGAACTGCCTATGACTCTGGATCCAAGGAATCAATACTCTC  700

seq1  TTCTGGACCTTGAAGGCAACTGTCCTCGATCTATCTATCTATCTATCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGACCTTGAAGGCAACTGTCCTCGATCTATCTATCTATCTATCTAT  750

seq1  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATCTATCTA  800

seq1  TCTATTATCTATCTATCATCTATCTATCTATCTATCATCTATCTATCAAT  850
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTATTATCTATCTATCATCTATCTATCTATCTATCATCTATCTAT-AAT  849

seq1  CTATCTATCTATCATCTATCTATCATCTATCTATCTATCATCTATCTATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTATCATCTATCTATCATCTATCTATCTATCATCTATCTATC  899

seq1  TATCAATCATCTATCTATCATGT-ATCTATCTATCT-----ATCTATCTA  944
      |||||| |||| | | ||||||| ||||||||||||     ||| |||||
seq2  TATCAA-CATCGACCGATCATGTAATCTATCTATCTATCCAATCAATCTA  948

seq1  TC  946
      ||
seq2  TC  950