BAC Information

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BAC

Clone NameB6Ng01-294D06
Chromosome15 (Build37)
Map Location 8,502,631 - 8,632,093
singlet/doubletdoublet
Overlap geneSlc1a3
Upstream geneGdnf, Wdr70, LOC665556, LOC621001, Nup155, 2410089E03Rik, LOC100039599, Nipbl, EG666437, LOC100039560, LOC100039633
Downstream geneEG622770, LOC268781, LOC382969, LOC100039619, Ranbp3l, 1110020G09Rik, Skp2, Lmbrd2, LOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294D06.bB6Ng01-294D06.g
ACCGA090391GA090392
length1,1151,142
definitionB6Ng01-294D06.b B6Ng01-294D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,630,967 - 8,632,093)(8,502,631 - 8,503,509)
sequence
gaattcctccctcaccactggaggcgattggtttctgccctgcagcatga
cattcgatttccttgatcacagctgcataattctaaatattatcattggt
tatacaacttcccggtctcccctgagaaaaatcagcccatgtagagcgcc
ttggattccactgggagtaagcacagctactacagcggagtcttcctggc
tcacttcttggggcaaactcaacctctaccttaacatccaaatccaactc
atggtccctcaccgaggctgtcttaccggctgattcttggttgtgttaag
ttgccggtgacaactaaccgtcatacctgtcttaggtcttctgacatcca
gagctcaggatttgagaagacttactgccccattcagattcatcacaccc
tctggagactgcacacagccccaaatcactcttcccacaagagttcttca
atgacctggtcaaaaaatgggacccccaaaattgacatttgcttaatagt
tctcaaggtggttctactgtggacctagggttgagactcaccatgctatt
gtttctatagaattgttctctggtttccaggcctacggtcaccagtgttt
ctgtttaggttcatccctaattagttcagttgctccctgtcccaggaagc
catccctggctttcccctacctttgctctagcaggttctatttcatagat
actgcaacaccatctgcctcctgttctcacaaaggctttgagagaatact
gtatttgccttgtttgttctttgcattgcctagcaatttcttggcaaggc
aaacaggacccttgacggacttcccagacctctgtgctagctttgcggtc
cactgccccctgacagtttcctctttcgatatttcagtaccctcagtact
tcactcttcctcctcaggtacttcaccctttgacacgacttcttccccag
ccccactgaagaccctgactcctccagatccagcttagccttcagacctg
gtataaagttgtcctggctggcgcactgaagcaggatcttctccctggag
tagctatggtagtaggaatgagtatgccatcaaagcaaatacacctaggc
ttagtttcgagtaca
gaattcatgcagttgaatctttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cggtgaaactcccgtcccgagtttcctcccgggttttttcttcccggatt
ttttctcgtcccggaatttctcgtcccggatttcagcaccaattcttaat
cgcgttctcacgcctggccaggaagaacacaacagaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagctaggagcgcaaaccccca
gccccaaaagcgaaagccaccccttcttacatctttaggagccagagctc
cggcgcgccaaagcgcagagcgcgctctattgtttacatctttaggcagc
gagagagcgcagggcgcgcagagccagagagatgccagcgagagagaatg
gcggaaaacccgtcccctttaaggaggagtgatccttcgcttaggacgca
tcactccctgattggctgcagcccatggccgagctgacgttcacgggaaa
ggcagagtacaagtagtcgtaaaatacccttggcacatgcgcagattatt
tgtttaccacttagaacacaggatgtcagcgccatcttgtgacggcgaat
gtgggggcggctcccaacagacacttttgatttcggacttccatcttagc
agaagaaactgagaatattttcctgttccaagccactcagtttatggtac
tttctatggcagctgtgagaaatgaattgaaagttttttgcctcatccca
ttccctcactgattctcttgcacatacaagagccttgcctcagctctgct
cataaggaccataatctgagacagaagaaattttcctgctttcacactga
accatctgtcggttgtaacagctgactcctctgagtgctgtacctttcag
ctattccatcttctttctgagctgttgcagttgcagagtgtatgaaacca
gtgatctgcagaagagatcagcatctcttgattgtttttctatcagcagc
tcagcactccattgtaaggccctaactctgctcttctgaataacataggc
tcatagcttccagtcatgtggggtagcagatgttttcattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_8630967_8632093
seq2: B6Ng01-294D06.b_49_1163 (reverse)

seq1  TGTACTTTCCAAAACTAAGCCTA-GTGTATTTGCTTTGATGGCCTTAACT  49
      ||||||   | |||||||||||| ||||||||||||||||||| |  |||
seq2  TGTACT---CGAAACTAAGCCTAGGTGTATTTGCTTTGATGGCAT--ACT  45

seq1  CATTTCCTTAACTACCATAGCTACTCCAGGGAGAAGATCCTTGCTTTCAG  99
      || |||||  |||||||||||||||||||||||||||||| ||| |||||
seq2  CA-TTCCT--ACTACCATAGCTACTCCAGGGAGAAGATCC-TGC-TTCAG  90

seq1  GTGGCGCCAGCCAGGACAACTTTATACCAGGTCTGAAGGCTAAGCTGGAT  149
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --TGCGCCAGCCAGGACAACTTTATACCAGGTCTGAAGGCTAAGCTGGAT  138

seq1  CTTGGAGGAGTCAGGGTCTTCAGTGGGGCTGGGGAAGAAGTCGTGTCAAA  199
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-TGGAGGAGTCAGGGTCTTCAGTGGGGCTGGGGAAGAAGTCGTGTCAAA  187

seq1  GGGTGAAGTACCTGAGGAGGAAGAGTGAAGTACTGAGGGTACTGAAATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGTACCTGAGGAGGAAGAGTGAAGTACTGAGGGTACTGAAATAT  237

seq1  CGAAAGAGGAAACTGTCAGGGGGCAGTGGACCGCAAAGCTAGCACAGAGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAGAGGAAACTGTCAGGGGGCAGTGGACCGCAAAGCTAGCACAGAGG  287

seq1  TCTGGGAAGTCCGTCAAGGGTCCTGTTTGCCTTGCCAAGAAATTGCTAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGTCCGTCAAGGGTCCTGTTTGCCTTGCCAAGAAATTGCTAGG  337

seq1  CAATGCAAAGAACAAACAAGGCAAATACAGTATTCTCTCAAAGCCTTTGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAAGAACAAACAAGGCAAATACAGTATTCTCTCAAAGCCTTTGT  387

seq1  GAGAACAGGAGGCAGATGGTGTTGCAGTATCTATGAAATAGAACCTGCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAGGAGGCAGATGGTGTTGCAGTATCTATGAAATAGAACCTGCTA  437

seq1  GAGCAAAGGTAGGGGAAAGCCAGGGATGGCTTCCTGGGACAGGGAGCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAAGGTAGGGGAAAGCCAGGGATGGCTTCCTGGGACAGGGAGCAAC  487

seq1  TGAACTAATTAGGGATGAACCTAAACAGAAACACTGGTGACCGTAGGCCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAATTAGGGATGAACCTAAACAGAAACACTGGTGACCGTAGGCCT  537

seq1  GGAAACCAGAGAACAATTCTATAGAAACAATAGCATGGTGAGTCTCAACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCAGAGAACAATTCTATAGAAACAATAGCATGGTGAGTCTCAACC  587

seq1  CTAGGTCCACAGTAGAACCACCTTGAGAACTATTAAGCAAATGTCAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCCACAGTAGAACCACCTTGAGAACTATTAAGCAAATGTCAATTT  637

seq1  TGGGGGTCCCATTTTTTGACCAGGTCATTGAAGAACTCTTGTGGGAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTCCCATTTTTTGACCAGGTCATTGAAGAACTCTTGTGGGAAGAG  687

seq1  TGATTTGGGGCTGTGTGCAGTCTCCAGAGGGTGTGATGAATCTGAATGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGGGCTGTGTGCAGTCTCCAGAGGGTGTGATGAATCTGAATGGG  737

seq1  GCAGTAAGTCTTCTCAAATCCTGAGCTCTGGATGTCAGAAGACCTAAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAGTCTTCTCAAATCCTGAGCTCTGGATGTCAGAAGACCTAAGAC  787

seq1  AGGTATGACGGTTAGTTGTCACCGGCAACTTAACACAACCAAGAATCAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGACGGTTAGTTGTCACCGGCAACTTAACACAACCAAGAATCAGC  837

seq1  CGGTAAGACAGCCTCGGTGAGGGACCATGAGTTGGATTTGGATGTTAAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAAGACAGCCTCGGTGAGGGACCATGAGTTGGATTTGGATGTTAAGG  887

seq1  TAGAGGTTGAGTTTGCCCCAAGAAGTGAGCCAGGAAGACTCCGCTGTAGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTTGAGTTTGCCCCAAGAAGTGAGCCAGGAAGACTCCGCTGTAGT  937

seq1  AGCTGTGCTTACTCCCAGTGGAATCCAAGGCGCTCTACATGGGCTGATTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCTTACTCCCAGTGGAATCCAAGGCGCTCTACATGGGCTGATTT  987

seq1  TTCTCAGGGGAGACCGGGAAGTTGTATAACCAATGATAATATTTAGAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGGGAGACCGGGAAGTTGTATAACCAATGATAATATTTAGAATT  1037

seq1  ATGCAGCTGTGATCAAGGAAATCGAATGTCATGCTGCAGGGCAGAAACCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGCTGTGATCAAGGAAATCGAATGTCATGCTGCAGGGCAGAAACCA  1087

seq1  ATCGCCTCCAGTGGTGAGGGAGGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  ATCGCCTCCAGTGGTGAGGGAGGAATTC  1115

seq1: chr15_8502631_8503509
seq2: B6Ng01-294D06.g_348_1208

seq1  CTAGGAGCGCAAACCCCCAGCCCCAAAAGCGAAAGCCACCCCTTCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGCGCAAACCCCCAGCCCCAAAAGCGAAAGCCACCCCTTCTTACA  50

seq1  TCTTTAGGAGCCAGAGCTCCGGCGCGCCAAAGCGCAGAGCGCGCTCTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGGAGCCAGAGCTCCGGCGCGCCAAAGCGCAGAGCGCGCTCTATT  100

seq1  GTTTACATCTTTAGGCAGCGAGAGAGCGCAGGGCGCGCAGAGCCAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACATCTTTAGGCAGCGAGAGAGCGCAGGGCGCGCAGAGCCAGAGAG  150

seq1  ATGCCAGCGAGAGAGAATGGCGGAAAACCCGTCCCCTTTAAGGAGGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGCGAGAGAGAATGGCGGAAAACCCGTCCCCTTTAAGGAGGAGTG  200

seq1  ATCCTTCGCTTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCGCTTAGGACGCATCACTCCCTGATTGGCTGCAGCCCATGGCCG  250

seq1  AGCTGACGTTCACGGGAAAGGCAGAGTACAAGTAGTCGTAAAATACCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACGTTCACGGGAAAGGCAGAGTACAAGTAGTCGTAAAATACCCTT  300

seq1  GGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATGCGCAGATTATTTGTTTACCACTTAGAACACAGGATGTCAGCG  350

seq1  CCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAGACACTTTTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGTGACGGCGAATGTGGGGGCGGCTCCCAACAGACACTTTTGAT  400

seq1  TTCGGACTTCCATCTTAGCAGAAGAAACTGAGAATATTTTCCTGTTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGACTTCCATCTTAGCAGAAGAAACTGAGAATATTTTCCTGTTCCAA  450

seq1  GCCACTCAGTTTATGGTACTTTCTATGGCAGCTGTGAGAAATGAATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTCAGTTTATGGTACTTTCTATGGCAGCTGTGAGAAATGAATTGAA  500

seq1  AGTTTTTTGCCTCATCCCATTCCCTCACTGATTCTCTTGCACATACAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTTGCCTCATCCCATTCCCTCACTGATTCTCTTGCACATACAAGA  550

seq1  GCCTTGCCTCAGGCTCTGCTCATAAGGACCATAATCTGAGACAGAAGAAA  600
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCCTCA-GCTCTGCTCATAAGGACCATAATCTGAGACAGAAGAAA  599

seq1  TTTTCCTGCTTTCACACTGAACCATCTGTCGGTTGTAACAGCTGACTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGCTTTCACACTGAACCATCTGTCGGTTGTAACAGCTGACTCCT  649

seq1  CTGAGTGCTGTACCTTTCAGCTATTCCATCTTCTTTCTGAGCTGGTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTGAGTGCTGTACCTTTCAGCTATTCCATCTTCTTTCTGAGCT-GTTGCA  698

seq1  GTTGCAAGAGTGGTATGAAACCAGTTGAATCTGGCAGGAAGAGGAATCAG  750
      ||||| ||||| |||||||||||||   |||| ||| ||||||  |||||
seq2  GTTGC-AGAGT-GTATGAAACCAGT--GATCT-GCA-GAAGAG--ATCAG  740

seq1  GCCATCTCTTGATTGTTTTTCTATTCCAGCAGGCTCAAGCACTCCATTGT  800
        ||||||||||||||||||||||  ||||| |||| |||||||||||||
seq2  --CATCTCTTGATTGTTTTTCTAT--CAGCA-GCTC-AGCACTCCATTGT  784

seq1  AA-GCCCT-ACTCTGCTC-TCTG-ATAACATAGCTTCCCATAGCTTTTCT  846
      || ||||| ||||||||| |||| |||||||||   | ||||||  ||| 
seq2  AAGGCCCTAACTCTGCTCTTCTGAATAACATAG--GCTCATAGC--TTCC  830

seq1  AGTCATGTGGGGTTAGCAGAGATGTTTCATTGC  879
      |||||||||||| |||||||  | |||||||||
seq2  AGTCATGTGGGG-TAGCAGATGT-TTTCATTGC  861