BAC Information

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BAC

Clone NameB6Ng01-294E12
Chromosome15 (Build37)
Map Location 5,227,084 - 5,228,106
singlet/doubletsinglet
Overlap genenone
Upstream genePlcxd3, C6, LOC100039214, 4930455B06Rik, C7, Card6, Rpl37, LOC100039281, Prkaa1, Ttc33, Ptger4
Downstream geneLOC100039322, LOC100039308, LOC666291, LOC666319, LOC100039358, LOC666323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-294E12.bB6Ng01-294E12.g
ACCGA090451GA090452
length1,2281,028
definitionB6Ng01-294E12.b B6Ng01-294E12.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttttttagttctgtaccccattttaatggggttatatgaattt
ctggagtccagcttcttgagctctttgtatatattagatattagtcccct
atcagatttaggattggtaaaaatcctttcccaatctgttggtggccttt
ttaccttattgacagtgtcttttgccttacagaagctttgcaattttatg
aggtcccatttgtcaattcttgatcttatagcacaagccattgctgttct
gtttaggaatttttcccctgtgccagtatcttcgaggattttctcctctt
tctcctctattaatttcagtgtcctcggtcttatctggaggtctttgatc
cacttagacttgaactttgtacaaggagataggaatggatcaattcgcat
tcttctacataataaccgccagttgtgccagcaccatttgttgaaaatgc
tgccttttttcactggatggttttagctcccttgtcaaagatcaagtgac
cataggtgttggattcatttctgagtcttcaattctataccattgatcta
cctgtctgtcattgtacctgtaccatgcagtttttatcacaattgctctg
tagtacagctttaggtcaggcatggtgattccaccagaggtttttttatt
tttgagaatagtttttgctttcctaggttttttattattccagatgaatt
tgcaaattgccccttctaactcagtgaagaattgagttggaatttggatg
gggattgcattgaatctgacagaaagcaccaacaaaaaattaaatctcac
ctagggactgaaaggttttccagaagttaagaatactagttactcttcca
gaagacacgggatcaatttctggcagccatatggtggttcacaatcatcc
ctaacataagctcctgaggaactaatgcccttttctggcctctacaggca
ccaggcataaacatggaacacagacatacatgcaggcaaaacaccggtgc
atgtaaattaatttaaaaaatgtaaactaccagaaaaaaggcaactagat
ctaggtatgtttttagcctcaaacagttccagaagagtgaagtagaagga
tcaactgaaactcagaaatcccaagactttgaggccatagccagaatcca
tatcccaaagtatgttgctgtgtgtgatagactaatccaacctccggaga
aataattttattatgaggccataaatac
gaattccatgaactgaactgcagggactgcacacactgaatagaactgaa
taaaattgccggagctcaaatgaactcaattgcatttaactgaactgtac
caaactgcactgaactgaactcagcttaactgcactcactggactgctgc
tctccactcctgactcactctgcactgctctttaaattgcctctttttcc
tgtctgtcctcctgagagttgggtgtatcctatctctgactcactctgtc
aaatctttccctgattcaccactttgtcttcccttcaattagacaacact
ttcaaacatggctgcctccttctacaaactacccttgcctacattgtttg
ggattaaaggtgtgtaccaagggcctgtatgtattccagccagatgacac
agacctagaaggtctttggatgtgatccctggttagagcagccatgtttc
cagattaaagttcctctatagttataatttggaattataagtatttttgg
agatagaggtttgctaaagggatcctgacccacaggttaggaaccacaac
tttggcattttttcaaggtccttccctaacattgatggggactagttctc
agttttccatggacctcattccatttgaagtttctttaaagaaagttttc
agctatattaccagcaggattcatgtccacattacgttgctcagcattgt
atctctgtatcatccctctatcccatttgtcactctcattctctagctat
ggttttctcaagaggttgctacccccatagctggtgacctgcacaggcag
acactttgtttttcagtcttataatctcagagtctatcacatagtaatta
gtaaatgcttggagtatatacacacacaaacacacacacacacacacaca
cacacacaaaccacagtgacactgtaacatttaccaacctgtgtcctaat
aagcagctctgggaaaactgaacagggagcaaaggctggtgataatggtg
cattgaagccaataaatttaaggaaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_5227084_5228106
seq2: B6Ng01-294E12.g_67_1094

seq1  GAATTCCATGAACTGAACTGCAGGGACTGCACACACTGAATAGAACTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGAACTGAACTGCAGGGACTGCACACACTGAATAGAACTGAA  50

seq1  TAAAATTGCCGGAGCTCAAATGAACTCAATTGCATTTAACTGAACTGTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTGCCGGAGCTCAAATGAACTCAATTGCATTTAACTGAACTGTAC  100

seq1  CAAACTGCACTGAACTGAACTCAGCTTAACTGCACTCACTGGACTGCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGCACTGAACTGAACTCAGCTTAACTGCACTCACTGGACTGCTGC  150

seq1  TCTCCACTCCTGACTCACTCTGCACTGCTCTTTAAATTGCCTCTTTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACTCCTGACTCACTCTGCACTGCTCTTTAAATTGCCTCTTTTTCC  200

seq1  TGTCTGTCCTCCTGAGAGTTGGGTGTATCCTATCTCTGACTCACTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGTCCTCCTGAGAGTTGGGTGTATCCTATCTCTGACTCACTCTGTC  250

seq1  AAATCTTTCCCTGATTCACCACTTTGTCTTCCCTTCAATTAGACAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTCCCTGATTCACCACTTTGTCTTCCCTTCAATTAGACAACACT  300

seq1  TTCAAACATGGCTGCCTCCTTCTACAAACTACCCTTGCCTACATTGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACATGGCTGCCTCCTTCTACAAACTACCCTTGCCTACATTGTTTG  350

seq1  GGATTAAAGGTGTGTACCAAGGGCCTGTATGTATTCCAGCCAGATGACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGTGTGTACCAAGGGCCTGTATGTATTCCAGCCAGATGACAC  400

seq1  AGACCTAGAAGGTCTTTGGATGTGATCCCTGGTTAGAGCAGCCATGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGAAGGTCTTTGGATGTGATCCCTGGTTAGAGCAGCCATGTTTC  450

seq1  CAGATTAAAGTTCCTCTATAGTTATAATTTGGAATTATAAGTATTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTAAAGTTCCTCTATAGTTATAATTTGGAATTATAAGTATTTTTGG  500

seq1  AGATAGAGGTTTGCTAAAGGGATCCTGACCCACAGGTTAGGAACCACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGAGGTTTGCTAAAGGGATCCTGACCCACAGGTTAGGAACCACAAC  550

seq1  TTTGGCATTTTTTCAAGGTCCTTCCCTAACATTGATGGGGACTAGTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCATTTTTTCAAGGTCCTTCCCTAACATTGATGGGGACTAGTTCTC  600

seq1  AGTTTTCCATGGACCTCATTCCATTTGAAGTTTCTTTAAAGAAAGTTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCCATGGACCTCATTCCATTTGAAGTTTCTTTAAAGAAAGTTTTC  650

seq1  AGCTATATTACCAGCAGGATTCATGTCCACATTACGTTGCTCAGCATTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATTACCAGCAGGATTCATGTCCACATTACGTTGCTCAGCATTGT  700

seq1  ATCTCTGTATCATCCCTCTATCCCATTTGTCACTCTCATTCTCTAGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTATCATCCCTCTATCCCATTTGTCACTCTCATTCTCTAGCTAT  750

seq1  GGTTTTCTCAAGAGGTTGCTACCCCCATAGCTGGTGACCTGCACAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTCAAGAGGTTGCTACCCCCATAGCTGGTGACCTGCACAGGCAG  800

seq1  ACACTTTGTTTTTCAGTCTTATAATCTCAGAGTCTATCACATAGTAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACACTTTGTTTTTCAGTCTTATAATCTCAGAGTCTATCACATAGT-AATT  849

seq1  AGTAAATGCTT-GAGTATATACACACACAAACACACACACACACACACAC  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATGCTTGGAGTATATACACACACAAACACACACACACACACACAC  899

seq1  ACACACACAAACCACAGTGACACTGTAACATTTACCAACCTGTGTCCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAAACCACAGTGACACTGTAACATTTACCAACCTGTGTCCTAA  949

seq1  T-AGCAGCTCT-GGAAAACTGAACAGGGAGC-AAGGCTGGTGATAATGGT  996
      | ||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  TAAGCAGCTCTGGGAAAACTGAACAGGGAGCAAAGGCTGGTGATAATGGT  999

seq1  GGCATGAAG-CAAT-AATTTAAGGAAATT  1023
      |   ||||| |||| ||||||||||||||
seq2  GCATTGAAGCCAATAAATTTAAGGAAATT  1028