BAC Information

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BAC

Clone NameB6Ng01-295E20
Chromosome15 (Build37)
Map Location 98,918,336 - 98,940,018
singlet/doubletdoublet
Overlap gene2810451A06Rik
Upstream geneSenp1, Pfkm, Asb8, AI836003, Olfr288, LOC634104, EG629524, H1fnt, Zfp641, Olfr285, Olfr284, Olfr283, 1700031M16Rik, LOC100042818, Olfr282, LOC629549, Olfr281, Olfr240-ps1, GA_x5J8B7W76D0-7895713-7896429, Lalba, Olfr234, Olfr278-ps1, 2310037I24Rik, LOC100043418, Ccnt1, 4930415O20Rik, Adcy6, Cacnb3, Ddx23, Rnd1, Ccdc65, Fkbp11, Arf3, 5830427D03Rik, Wnt10b, Wnt1, Ddn, Prkag1, Mll2, Rhebl1, Dhh, Lmbr1l, Tuba1b, Tuba1a, EG668092, Tuba1c, Prph1, Troap, C1ql4
Downstream geneSpats2, Kcnh3, Mcrs1, EG545136, Prpf40b, Fmnl3, Tegt, C230021P08Rik, 4930556P03Rik, Faim2, LOC545137, Aqp2, Aqp5, Aqp6, Racgap1, LOC100043473, Accn2, Smarcd1, Gpd1, 2310016M24Rik, Lass5, Lima1, LOC100043481, LOC100042918, 1700030F18Rik, Gm920, D330037H05Rik, 4930478M13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295E20.bB6Ng01-295E20.g
ACCGA091204GA091205
length9151,034
definitionB6Ng01-295E20.b B6Ng01-295E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,939,113 - 98,940,018)(98,918,336 - 98,919,367)
sequence
gaattctggtgggtaggcactggacactttcccgattgggcctagggtag
cgggtttaggagtgcccagtctttgaggtagccaaggcatttaaaaataa
ggcagtgtttgtgtgtctttcatttgcagatccaaagatagttcctgggt
gggttcacacgatttactggaagccaaagtggtatagccggaactcaccg
caataatatccagttctgagatacaggtctggcctagcactcaagaggcc
ctgggttctagtcactgttcagtttccaaaacacacacacacacacacac
acacacacacacacacacacacacacacacgtcccaaagttggaaagaga
agggacctccaactcaagcaaaagtgaaaacggtcatacgtgaagtaagc
attccccaagatcctgtactgaggctggggctttctcagttcccttccaa
tacagagtctatgaagttttgctttgtagattcaggcagtggtggtgctt
taatccctgtaccgaggatgcaaaggccagcctagtctgcatagtgagtt
ccaggacagccagggctatatacagagattctgcctcaaagatagataga
tagatagatagatagatagatagatagatagatagatagatagatagaca
gacagacagataaatgcgtgtgcctgctgcccaaggagaccagaaatggg
tcttggatcccctgggaaccagagtcaaaggtcagtttctagctgcccct
gtgatacaggaaacagaaccagattcttctgcaaccagtgatcttaacca
ataaagctctttttttcccagctcccagaaagaaaaaaaaatcaactaaa
aacaaaacaaaccaaatttctttacagggttgtttttgtttgttttttat
ttagtttttggacct
gaattccttctgtgacagcagtgctgttccccaaaccgcctgtcagggtg
gcgatctccccgtgagctgggccaaggacagcccttgagggttcagaacc
tacagtctgatattaccctcgggtgcagttctaatgattcagggcgcctg
aaacctgcagcttcttggacggctggtttctcacaggtctaagatgccac
ctctccagacagttgctttcttgcggacagctgtgcctggtcccgggctc
ccctcgctgatttctcccggctagaccggggacctctccccgctctcccg
acgtcccaggctctgagctggcgcgggaggtgaggtggggggctctctct
ggacgcgacctcgtcagagattttgcactctagctcgtggaaagcactac
ctgcctcctacggccgcggtggccgcagccctcatcagagccctagccag
gcgtccctctccagcaagcgctctccctctctgcgtccctaaccttcctc
cctggcagcagtgcgggtggtgtgagtcgctgcgcggcaggagccactat
aagcggccgcaggcggagcgacccctggcgcccagagcgggaagcacggg
ggcggggcaggccgcgccatctccccccacctctccgccgagccccgggc
ctccaggttccctgcctgctcccagggctctgcagcgattctcagccctc
accgtatgtatcctcactttcaccctgtagctggagtttggtattctcag
cgcttaaaggaagataaacacagtgatggggtaaacaggggtcaggctac
aatatacgtataaaacctcagagggggaatgcagagctaaacaaggggca
agggggactcatatataacaaacagaaaacagaaataaatagcaatttcg
ccatcacacgtccctcggtgcccccaaccaaatacagaacatggcaaagg
gcctcaatcggtacttgttgaccagtctgggaaaagcaatctgtcatttc
ccaccctggccttctatgaatttggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_98939113_98940018
seq2: B6Ng01-295E20.b_45_959 (reverse)

seq1  AGGGCCAAAAACAAAATAAAAAACAAAC-AAAACAACCCTGTAAAG-AAT  48
      ||| |||||||| ||||||||||||||| ||||||||||||||||| |||
seq2  AGGTCCAAAAACTAAATAAAAAACAAACAAAAACAACCCTGTAAAGAAAT  50

seq1  TTGTTTTGTTTTGTTTTT-GTTG--TTTTTTTTCTTTCT-GGAGCTGG--  92
      ||| |||||||||||||| ||||  |||||||||||||| ||||||||  
seq2  TTGGTTTGTTTTGTTTTTAGTTGATTTTTTTTTCTTTCTGGGAGCTGGGA  100

seq1  -AAAAATGGC-TTATTGGTTAAGATCACTGGTTGCAG-AGAATCTGGTTC  139
       |||||  || |||||||||||||||||||||||||| ||||||||||||
seq2  AAAAAAGAGCTTTATTGGTTAAGATCACTGGTTGCAGAAGAATCTGGTTC  150

seq1  TGTTCCCTGTATTCACA-GGGCAGCTAGAAACTGACC-TTGACTCTGGTT  187
      |||| |||||| ||||| ||||||||||||||||||| ||||||||||||
seq2  TGTTTCCTGTA-TCACAGGGGCAGCTAGAAACTGACCTTTGACTCTGGTT  199

seq1  -CCAGGGGATCCAAGACCCACTTCTGGTCTCCTTGGGCAGCAGGCACACG  236
       ||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCCAGGGGATCCAAGACCCATTTCTGGTCTCCTTGGGCAGCAGGCACACG  249

seq1  CATTTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATCTGTCTGTCTGTCTATCTATCTATCTATCTATCTATCTATCTA  299

seq1  TCTATCTATCTATCTATCTATCTATCTTTGAGGCAGAATCTCTGTATATA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTTTGAGGCAGAATCTCTGTATATA  349

seq1  GCCCTGGCTGTCCTGGAACTCACTATGCAGACTAGGCTGGCCTTTGCATC  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTATGCAGACTAGGCTGGCCTTTGCATC  399

seq1  CTCGGTACAGGGATTAAAGCACCACCACTGCCTGAATCTACAAAGCAAAA  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTACAGGGATTAAAGCACCACCACTGCCTGAATCTACAAAGCAAAA  449

seq1  CTTCATAGACTCTGTATTGGAAGGGAACTGAGAAAGCCCCAGCCTCAGTA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAGACTCTGTATTGGAAGGGAACTGAGAAAGCCCCAGCCTCAGTA  499

seq1  CAGGATCTTGGGGAATGCTTACTTCACGTATGACCGTTTTCACTTTTGCT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTTGGGGAATGCTTACTTCACGTATGACCGTTTTCACTTTTGCT  549

seq1  TGAGTTGGAGGTCCCTTCTCTTTCCAACTTTGGGACGTGTGTGTGTGTGT  586
      ||||||||||||||||||||||||||||||||||||    ||||||||||
seq2  TGAGTTGGAGGTCCCTTCTCTTTCCAACTTTGGGAC----GTGTGTGTGT  595

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGGAAACT  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTGGAAACT  645

seq1  GAACAGTGACTAGAACCCAGGGCCTCTTGAGTGCTAGGCCAGACCTGTAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGACTAGAACCCAGGGCCTCTTGAGTGCTAGGCCAGACCTGTAT  695

seq1  CTCAGAACTGGATATTATTGCGGTGAGTTCCGGCTATACCACTTTGGCTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAACTGGATATTATTGCGGTGAGTTCCGGCTATACCACTTTGGCTT  745

seq1  CCAGTAAATCGTGTGAACCCACCCAGGAACTATCTTTGGATCTGCAAATG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAATCGTGTGAACCCACCCAGGAACTATCTTTGGATCTGCAAATG  795

seq1  AAAGACACACAAACACTGCCTTATTTTTAAATGCCTTGGCTACCTCAAAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACACACAAACACTGCCTTATTTTTAAATGCCTTGGCTACCTCAAAG  845

seq1  ACTGGGCACTCCTAAACCCGCTACCCTAGGCCCAATCGGGAAAGTGTCCA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCACTCCTAAACCCGCTACCCTAGGCCCAATCGGGAAAGTGTCCA  895

seq1  GTGCCTACCCACCAGAATTC  906
      ||||||||||||||||||||
seq2  GTGCCTACCCACCAGAATTC  915

seq1: chr15_98918336_98919367
seq2: B6Ng01-295E20.g_65_1098

seq1  GAATTCCTTCTGTGACAGCAGTGCTGTTCCCCAAACCGCCTGTCAGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTGTGACAGCAGTGCTGTTCCCCAAACCGCCTGTCAGGGTG  50

seq1  GCGATCTCCCCGTGAGCTGGGCCAAGGACAGCCCTTGAGGGTTCAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATCTCCCCGTGAGCTGGGCCAAGGACAGCCCTTGAGGGTTCAGAACC  100

seq1  TACAGTCTGATATTACCCTCGGGTGCAGTTCTAATGATTCAGGGCGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCTGATATTACCCTCGGGTGCAGTTCTAATGATTCAGGGCGCCTG  150

seq1  AAACCTGCAGCTTCTTGGACGGCTGGTTTCTCACAGGTCTAAGATGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGCAGCTTCTTGGACGGCTGGTTTCTCACAGGTCTAAGATGCCAC  200

seq1  CTCTCCAGACAGTTGCTTTCTTGCGGACAGCTGTGCCTGGTCCCGGGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGACAGTTGCTTTCTTGCGGACAGCTGTGCCTGGTCCCGGGCTC  250

seq1  CCCTCGCTGATTTCTCCCGGCTAGACCGGGGACCTCTCCCCGCTCTCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCGCTGATTTCTCCCGGCTAGACCGGGGACCTCTCCCCGCTCTCCCG  300

seq1  ACGTCCCAGGCTCTGAGCTGGCGCGGGAGGTGAGGTGGGGGGCTCTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCCCAGGCTCTGAGCTGGCGCGGGAGGTGAGGTGGGGGGCTCTCTCT  350

seq1  GGACGCGACCTCGTCAGAGATTTTGCACTCTAGCTCGTGGAAAGCACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCGACCTCGTCAGAGATTTTGCACTCTAGCTCGTGGAAAGCACTAC  400

seq1  CTGCCTCCTACGGCCGCGGTGGCCGCAGCCCTCATCAGAGCCCTAGCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCTACGGCCGCGGTGGCCGCAGCCCTCATCAGAGCCCTAGCCAG  450

seq1  GCGTCCCTCTCCAGCAAGCGCTCTCCCTCTCTGCGTCCCTAACCTTCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCCCTCTCCAGCAAGCGCTCTCCCTCTCTGCGTCCCTAACCTTCCTC  500

seq1  CCTGGCAGCAGTGCGGGTGGTGTGAGTCGCTGCGCGGCAGGAGCCACTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGCAGTGCGGGTGGTGTGAGTCGCTGCGCGGCAGGAGCCACTAT  550

seq1  AAGCGGCCGCAGGCGGAGCGACCCCTGGCGCCCAGAGCGGGAAGCACGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGGCCGCAGGCGGAGCGACCCCTGGCGCCCAGAGCGGGAAGCACGGG  600

seq1  GGCGGGGCAGGCCGCGCCATCTCCCCCCACCTCTCCGCCGAGCCCCGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGGGCAGGCCGCGCCATCTCCCCCCACCTCTCCGCCGAGCCCCGGGC  650

seq1  CTCCAGGTTCCCTGCCTGCTCCCAGGGCTCTGCAGCGATTCTCAGCCCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTTCCCTGCCTGCTCCCAGGGCTCTGCAGCGATTCTCAGCCCTC  700

seq1  ACCGTATGTATCCTCACTTTCACCCTGTAGCTGGAGTTTGGTATTCTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTATGTATCCTCACTTTCACCCTGTAGCTGGAGTTTGGTATTCTCAG  750

seq1  CGCTTAAAGGAAGATAAACACAGTGATGGGGTAAACAGGGGTCAGGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTAAAGGAAGATAAACACAGTGATGGGGTAAACAGGGGTCAGGCTAC  800

seq1  AATATACGTATAAAACCTCAGAGGGGGAATGCAGAGCTAAACAAGGGGCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACGTATAAAACCTCAGAGGGGGAATGCAGAGCTAAACAAGGGGCA  850

seq1  AGGGGGACTCATATATAACAAACAGAAAACAGAAATAAATAGCAA-TTCG  899
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGGGGGACTCATATATAACAAACAGAAAACAGAAATAAATAGCAATTTCG  900

seq1  CCATCACACGTCCCTCGGTGCCCCCAACCAAATACAGAACATGGCAAAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACACGTCCCTCGGTGCCCCCAACCAAATACAGAACATGGCAAAGG  950

seq1  G-CTCAATCGGTACTTGTTGACCAGTCTGGGAAAAGGCAAATCTGTCA-T  997
      | ||||||||||||||||||||||||||||||||||   ||||||||| |
seq2  GCCTCAATCGGTACTTGTTGACCAGTCTGGGAAAAG--CAATCTGTCATT  998

seq1  TCCCACCCTGGCC-TCTATGAATTTGGGGGGGGGGG  1032
      ||||||||||||| ||||||||||||||||||||||
seq2  TCCCACCCTGGCCTTCTATGAATTTGGGGGGGGGGG  1034