BAC Information

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BAC

Clone NameB6Ng01-295O03
Chromosome15 (Build37)
Map Location 78,233,422 - 78,386,389
singlet/doubletdoublet
Overlap geneTst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952
Upstream geneBC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik
Downstream geneRac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-295O03.bB6Ng01-295O03.g
ACCGA091640GA091641
length1,0791,102
definitionB6Ng01-295O03.b B6Ng01-295O03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,385,304 - 78,386,389)(78,233,422 - 78,234,522)
sequence
tcttacttggtaatccctccacagggacaagttagccaagatatagcatt
taagggaagaaagatttgctttggcttgtttccaaggctttggttggtgg
ttggtcaattcttcccttttaggccagtagcgaggctggaacaccatgta
ggaaggacatggtggagcagagcttgctcatctctgtaatctgccagcaa
acggataaagaacaaagagccaggaccaaggtttacccttccgaaccacg
gtctgagtgacctgcgccgtacgttccgcagttccacttcccaacagtct
gtctgaaattagactctcggggggttaaatcagtggttaactcagaggct
ccattatctagtcgtttctggaaatgatcacactcaggctgttctttatg
aatttcctaggtgtctctcaattcaatcaacttgataattgagattcacc
tttgcagtcccagcccatgtcagtttgacacctaatgcatttccttagat
cacacttaatctccaaataaagacggttgcagaagacgaccagtctactc
aacacggctgccctgttcataccccggactgcactgaggttttctccaaa
cgtctcaacaattttaatattgatcaaaagttcaaactgaaactgagagt
ccaggcaaattgacaaactcaaaagtatataacaccacacagtaaacact
cttattcttttgggttgaacagggtgtagagagactctttcgtgcactgg
gtgggagcatcacctgtcaataaaaagctactggcctattagcttagaca
ggaagtaggaggtgggagtcttggcaggaagagaggattctgggatagag
tctgctgtgggaggatatttgcctgaactcggaggagacagatttatgaa
actgagaagaggtagccagccgtgtggcactcatgaatagaataaacagt
taattgagttacgagttagtcgggaacaagcccaagctgtggcttagcca
tttattaattcagagtatttcgaaggtgggttctgggccgcagcaatgcg
aggcggcggcctggtaacggtgaaggtgg
gaattcccattttatagatgaggaaaactgaggcttggagttgggagaca
acctactactggcaaaggccctagagatccctgaattctaagatgcctct
cttctctgtgatccttcctacttactctggttgcccagactctgggggcc
tgacttacatctgtctttgtttgctagtgttcctgcctgtgtgacacaca
gctgcatctgaatattcttttttttattctgcatgcttactcaggactct
ggaaggcgcatgaaggcctgaggggcaggcaactgcccctcccccctact
cccactcccaccccccagggcaggaagttgccactgggtctctgaagacc
tgcttttcatttctgccactctcagtaccttcaggaacacccagtcaagg
cctccccaccccccacatcccatgctttgtatctggactgctgaacccgg
aggaacctccccgaacccatcccacagagcagaccatgaccttggtggtg
tgcatttgtgtccagcaaatcctctcacagaatgggtcaagtagcccctc
cctgcctgtctagatggcccctggactttgcccagtgccgtcccctccaa
agagcccctgaaacaaaagccatgtactgtgacagggctggggacctctg
cttgtttatcaacaaccaggaaatgcaaggtcaagcagttgggctgaacc
ctccacataaaagtggctgagctggaatgagaacccagtctccctggcac
ttcagggcaatcagaaaaggtaggaagagtcagagagaagagagggacct
tagaactcaggcagcctgtgtcccctctacaagccccgactttcctcgtc
tgtaaaatgataggacgctatgtctgggccccattatcactcatttcttg
gtttgcagcccaggaaagcccaatgggccagctccactctccctttcctt
ccagtttcagttccaagaagaaaatggggttttgagtcagaccaggaggc
atcccaggttcagagtctctggaaagtgcctaacagcatgcatctttctc
ctctgacctttcccagagcaagcaggcggggagaattcaaagctggagag
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78385304_78386389
seq2: B6Ng01-295O03.b_56_1134 (reverse)

seq1  CCACCTTCA-CGTTACCAGCCCGCCGCCTCCGCCATTGCTGCGGCCCAGA  49
      ||||||||| ||||||||| ||||||||||   |||||||||||||||||
seq2  CCACCTTCACCGTTACCAGGCCGCCGCCTC--GCATTGCTGCGGCCCAGA  48

seq1  ACCCACCTTCGGAATTACTTCTTGAATTAATAAATGGCTAAGCCACAAGC  99
      |||||||||| ||| ||||   |||||||||||||||||||||||| |||
seq2  ACCCACCTTC-GAAATACT--CTGAATTAATAAATGGCTAAGCCAC-AGC  94

seq1  TTGGGCTTGTTCCCCGACTAACTCGTAACTCAATTAACTGTTTATTCTAT  149
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  TTGGGCTTGTT-CCCGACTAACTCGTAACTCAATTAACTGTTTATTCTA-  142

seq1  TTCATGAGTGCCACACGGCTGGCTACCTCTTCTCAGTTTCATAAATCTGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGAGTGCCACACGGCTGGCTACCTCTTCTCAGTTTCATAAATCTGT  192

seq1  CTCCTCCGAGTTCAGGCAAATATCCTCCCACAGCAGACTCTATCCCAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCGAGTTCAGGCAAATATCCTCCCACAGCAGACTCTATCCCAGAA  242

seq1  TCCTCTCTTCCTGCCAAGACTCCCACCTCCTACTTCCTGTCTAAGCTAAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCTTCCTGCCAAGACTCCCACCTCCTACTTCCTGTCTAAGCTAAT  292

seq1  AGGCCAGTAGCTTTTTATTGACAGGTGATGCTCCCACCCAGTGCACGAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGTAGCTTTTTATTGACAGGTGATGCTCCCACCCAGTGCACGAAA  342

seq1  GAGTCTCTCTACACCCTGTTCAACCCAAAAGAATAAGAGTGTTTACTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCTCTACACCCTGTTCAACCCAAAAGAATAAGAGTGTTTACTGTG  392

seq1  TGGTGTTATATACTTTTGAGTTTGTCAATTTGCCTGGACTCTCAGTTTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTATATACTTTTGAGTTTGTCAATTTGCCTGGACTCTCAGTTTCA  442

seq1  GTTTGAACTTTTGATCAATATTAAAATTGTTGAGACGTTTGGAGAAAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACTTTTGATCAATATTAAAATTGTTGAGACGTTTGGAGAAAACC  492

seq1  TCAGTGCAGTCCGGGGTATGAACAGGGCAGCCGTGTTGAGTAGACTGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCAGTCCGGGGTATGAACAGGGCAGCCGTGTTGAGTAGACTGGTC  542

seq1  GTCTTCTGCAACCGTCTTTATTTGGAGATTAAGTGTGATCTAAGGAAATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTGCAACCGTCTTTATTTGGAGATTAAGTGTGATCTAAGGAAATG  592

seq1  CATTAGGTGTCAAACTGACATGGGCTGGGACTGCAAAGGTGAATCTCAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGTGTCAAACTGACATGGGCTGGGACTGCAAAGGTGAATCTCAAT  642

seq1  TATCAAGTTGATTGAATTGAGAGACACCTAGGAAATTCATAAAGAACAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTTGATTGAATTGAGAGACACCTAGGAAATTCATAAAGAACAGC  692

seq1  CTGAGTGTGATCATTTCCAGAAACGACTAGATAATGGAGCCTCTGAGTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTGATCATTTCCAGAAACGACTAGATAATGGAGCCTCTGAGTTA  742

seq1  ACCACTGATTTAACCCCCCGAGAGTCTAATTTCAGACAGACTGTTGGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGATTTAACCCCCCGAGAGTCTAATTTCAGACAGACTGTTGGGAA  792

seq1  GTGGAACTGCGGAACGTACGGCGCAGGTCACTCAGACCGTGGTTCGGAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACTGCGGAACGTACGGCGCAGGTCACTCAGACCGTGGTTCGGAAG  842

seq1  GGTAAACCTTGGTCCTGGCTCTTTGTTCTTTATCCGTTTGCTGGCAGATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAACCTTGGTCCTGGCTCTTTGTTCTTTATCCGTTTGCTGGCAGATT  892

seq1  ACAGAGATGAGCAAGCTCTGCTCCACCATGTCCTTCCTACATGGTGTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATGAGCAAGCTCTGCTCCACCATGTCCTTCCTACATGGTGTTCC  942

seq1  AGCCTCGCTACTGGCCTAAAAGGGAAGAATTGACCAACCACCAACCAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCGCTACTGGCCTAAAAGGGAAGAATTGACCAACCACCAACCAAAG  992

seq1  CCTTGGAAACAAGCCAAAGCAAATCTTTCTTCCCTTAAATGCTATATCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAAACAAGCCAAAGCAAATCTTTCTTCCCTTAAATGCTATATCTT  1042

seq1  GGCTAACTTGTCCCTGTGGAGGGATTACCAAGTAAGA  1086
      |||||||||||||||||||||||||||||||||||||
seq2  GGCTAACTTGTCCCTGTGGAGGGATTACCAAGTAAGA  1079

seq1: chr15_78233422_78234522
seq2: B6Ng01-295O03.g_65_1166

seq1  GAATTCCCATTTTATAGATGAGGAAAACTGAGGCTTGGAGTTGGGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTTTATAGATGAGGAAAACTGAGGCTTGGAGTTGGGAGACA  50

seq1  ACCTACTACTGGCAAAGGCCCTAGAGATCCCTGAATTCTAAGATGCCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTACTGGCAAAGGCCCTAGAGATCCCTGAATTCTAAGATGCCTCT  100

seq1  CTTCTCTGTGATCCTTCCTACTTACTCTGGTTGCCCAGACTCTGGGGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTGATCCTTCCTACTTACTCTGGTTGCCCAGACTCTGGGGGCC  150

seq1  TGACTTACATCTGTCTTTGTTTGCTAGTGTTCCTGCCTGTGTGACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTACATCTGTCTTTGTTTGCTAGTGTTCCTGCCTGTGTGACACACA  200

seq1  GCTGCATCTGAATATTCTTTTTTTTATTCTGCATGCTTACTCAGGACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATCTGAATATTCTTTTTTTTATTCTGCATGCTTACTCAGGACTCT  250

seq1  GGAAGGCGCATGAAGGCCTGAGGGGCAGGCAACTGCCCCTCCCCCCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCGCATGAAGGCCTGAGGGGCAGGCAACTGCCCCTCCCCCCTACT  300

seq1  CCCACTCCCACCCCCCAGGGCAGGAAGTTGCCACTGGGTCTCTGAAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCCACCCCCCAGGGCAGGAAGTTGCCACTGGGTCTCTGAAGACC  350

seq1  TGCTTTTCATTTCTGCCACTCTCAGTACCTTCAGGAACACCCAGTCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTCATTTCTGCCACTCTCAGTACCTTCAGGAACACCCAGTCAAGG  400

seq1  CCTCCCCACCCCCCACATCCCATGCTTTGTATCTGGACTGCTGAACCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCACCCCCCACATCCCATGCTTTGTATCTGGACTGCTGAACCCGG  450

seq1  AGGAACCTCCCCGAACCCATCCCACAGAGCAGACCATGACCTTGGTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTCCCCGAACCCATCCCACAGAGCAGACCATGACCTTGGTGGTG  500

seq1  TGCATTTGTGTCCAGCAAATCCTCTCACAGAATGGGTCAAGTAGCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTGTGTCCAGCAAATCCTCTCACAGAATGGGTCAAGTAGCCCCTC  550

seq1  CCTGCCTGTCTAGATGGCCCCTGGACTTTGCCCAGTGCCGTCCCCTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTGTCTAGATGGCCCCTGGACTTTGCCCAGTGCCGTCCCCTCCAA  600

seq1  AGAGCCCCTGAAACAAAAGCCATGTACTGTGACAGGGCTGGGGACCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCCTGAAACAAAAGCCATGTACTGTGACAGGGCTGGGGACCTCTG  650

seq1  CTTGTTTATCAACAACCAGGAAATGCAAGGTCAAGCAGTTGGGCTGAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTATCAACAACCAGGAAATGCAAGGTCAAGCAGTTGGGCTGAACC  700

seq1  CTCCACATAAAAGTGGCTGAGCTGGAATGAGAACCCAGTCTCCCTGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACATAAAAGTGGCTGAGCTGGAATGAGAACCCAGTCTCCCTGGCAC  750

seq1  TTCAGGGCAATCAGAAAAGGTAGGAAGAGTCAGAGAGAAGAGAGGGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGCAATCAGAAAAGGTAGGAAGAGTCAGAGAGAAGAGAGGGACCT  800

seq1  TAGAACTCAGGCAGCCTGTGTCCCCTCTACAAGCCCCGACTTTCCTCGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACTCAGGCAGCCTGTGTCCCCTCTACAAGCCCCGACTTTCCTCGTC  850

seq1  TGTAAAATGATAGGACGCTATGTCTGGGCCCCATTATCACTCATTTCTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAATGATAGGACGCTATGTCTGGGCCCCATTATCACTCATTTCTTG  900

seq1  GTTTGCAG-CCAGGAAAGCCCAAT-GGCCAGCTCCACTCTCCCTT--CCT  946
      |||||||| ||||||||||||||| ||||||||||||||||||||  | |
seq2  GTTTGCAGCCCAGGAAAGCCCAATGGGCCAGCTCCACTCTCCCTTTCCTT  950

seq1  CCAGTTTCAGTTCCAAGAAGAAAATGGGGTTTTGAGTCAAGACCAGGAGG  996
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CCAGTTTCAGTTCCAAGAAGAAAATGGGGTTTTGAGTC-AGACCAGGAGG  999

seq1  CATCCCAGGTTCAGAGTCTCTGGAAAGTGCCTAACAAGCATGCATCTTTC  1046
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CATCCCAGGTTCAGAGTCTCTGGAAAGTGCCTAAC-AGCATGCATCTTTC  1048

seq1  TCCTCTGACC-TTCCCAGAGCCAAGCAGGC-GGGAGAAATCAAAGGCCTG  1094
      |||||||||| ||||||||| ||||||||| ||||||| ||||||  |||
seq2  TCCTCTGACCTTTCCCAGAG-CAAGCAGGCGGGGAGAATTCAAAG--CTG  1095

seq1  GAGAGAG  1101
      |||||||
seq2  GAGAGAG  1102