BAC Information

Click to search

BAC

Clone NameB6Ng01-299M18
Chromosome15 (Build37)
Map Location 102,126,046 - 102,264,440
singlet/doubletdoublet
Overlap geneEspl1, Pfdn5, Myg1, Aaas, Sp7, Sp1
Upstream gene6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27
Downstream geneAmhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299M18.bB6Ng01-299M18.g
ACCGA094540GA094541
length1,1431,165
definitionB6Ng01-299M18.b B6Ng01-299M18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,126,046 - 102,127,205)(102,263,273 - 102,264,440)
sequence
gaattcttccctttactcttcactcaactctatagcctttcttatacaac
ccatgtaagatgtaggctggaatccaaacttgggagggaggagaacctag
gagaacccggaggttgtccctgcacccttttcagtgtccctctccacaaa
gtcagagttttaaagaatcccaaagaccctgtgtggtggtgtacaccttc
aaccccagcattaggcaggtggatctctcttagaggccagcctggtctat
ttagcaagttccaggacagctaggatcacgtagtgagaaccagtctcaaa
aaacaaaaataaaaacaaaaaaatacatcaaaggctattacaccttttct
ttcctagtaacgcaaagcaagccatgtgggtttcttattttaattctctt
gaaatttaaaatcctgcctgagctcagggaataaaggcaagaaagactta
gtgattgaccacccaactgcgaaatgactgtaattgactgaggttgaaga
aggagactgtgtcccagagtctttccggtccagagttgtacccgcccctc
caggaacacgtgacagacagcgcggcagataaactacaactcccagagcg
ccacgcggccggcctgcgttacgctttctcgctgattggtcactagggat
atttgaaaggaggtgctggcgcggaaaacgaagcgtgcccacccggtgct
tggtggagctcgggctggaggacgctgctaggccggtgaggaacggcagc
ttcgagggaattaaggcacggagggtctggtgagcgcgcgctcaagccgc
ggtaagtgacattcccattgctgacctgggaagaaacggggcgtttctgc
ggaggctcggcggcccccgaaagggtgtgctcggcgcccaggaccctgtg
gagacccctgcggtgggcctggtgggacactgaggacaaggagcgtcctg
gaggagggaacagtggacttgtcagtttgtacggagcccagttatatcgg
ctctcccccgcatagatttctggtgggaattctttgcctgctcattcctt
ttgatcctctacacttcatccgtctttcctcagtattcaatacacccttc
gcagctctacgactagtcgtgtatctagactttggccaggagg
gaattccaggctagcctgggctacagagtaaaaccctgtctcaatgagac
aaaacaaacaaaaaaccccaaacaacaaaaatgtaatgaaaagaatttca
gaatcaatatgcatgccagttatgttaaattctgaaggccaaaagtttgg
ggaaaggttatttttcagtcatgagaccctgactagaggaatgtagtctc
ttaactttagaaaaggctgagcggctcacagacagggagacaagagcgga
aactgattccattttatggtcaaataagacaccggagaaggaaatttaaa
aagcagaaagaatctgatgtaaattaattcatggtaatgtgttaatgtag
cagatgctgagggtcaatcatcagcttttcacccaagagagaaaacacca
tcagataacttatccaaaggcttatagtcctcagcatctcgaagccggct
tgtaactaatcacctcatactgaacaagattctatttcttgaaattttct
agcaaaatactgcacactccactgagttatcctgccctcttcctccagag
atgcaaagtacatgattataaatgtaaaataacacggtttgtttgagttc
tgcttttctttaggaataaaaggtgtgatggtggctgaggacagataact
tttacgtcaacattaataacatgtgatttggggacagtcccttgaaatat
ttcctgagtcttgataacagtattaagtctgcatagaaaggaccaaatgg
aataaactaatgttagtatttcaagctaacaataccataaacttatcaag
aacctagtttagatggaatttacataaaatgtataataacactataatct
atttgtagccaagatagagaagttagaataaggaatccactatagatttg
ggatgttgatttcattttcaacacaaaaatagtttcttctttagaaagtg
cactaggatatcccccaaccccataactgttaaccgattagcataagcag
agactgaccttaggaacataccccagttttatgacatttctagaatactg
gacctgaagccgttttgatctgatttatttttccaccatttcaaatatag
gtcctccatctgcatgtagatattacaggcacaaataacgtccacacgcc
agtcttctcaaaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102126046_102127205
seq2: B6Ng01-299M18.b_46_1188

seq1  GAATTCTTCCCTTTACTCTTCACTCAACTCTATAGCCTTTCTTATACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCTTTACTCTTCACTCAACTCTATAGCCTTTCTTATACAAC  50

seq1  CCATGTAAGATGTAGGCTGGAATCCAAACTTGGGAGGGAGGAGAACCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTAAGATGTAGGCTGGAATCCAAACTTGGGAGGGAGGAGAACCTAG  100

seq1  GAGAACCCGGAGGTTGTCCCTGCACCCTTTTCAGTGTCCCTCTCCACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCCGGAGGTTGTCCCTGCACCCTTTTCAGTGTCCCTCTCCACAAA  150

seq1  GTCAGAGTTTTAAAGAATCCCAAAGACCCTGTGTGGTGGTGTACACCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTTTTAAAGAATCCCAAAGACCCTGTGTGGTGGTGTACACCTTC  200

seq1  AACCCCAGCATTAGGCAGGTGGATCTCTCTTAGAGGCCAGCCTGGTCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGCATTAGGCAGGTGGATCTCTCTTAGAGGCCAGCCTGGTCTAT  250

seq1  TTAGCAAGTTCCAGGACAGCTAGGATCACGTAGTGAGAACCAGTCTCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAAGTTCCAGGACAGCTAGGATCACGTAGTGAGAACCAGTCTCAAA  300

seq1  AAACAAAAATAAAAACAAAAAAATACATCAAAGGCTATTACACCTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATAAAAACAAAAAAATACATCAAAGGCTATTACACCTTTTCT  350

seq1  TTCCTAGTAACGCAAAGCAAGCCATGTGGGTTTCTTATTTTAATTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAGTAACGCAAAGCAAGCCATGTGGGTTTCTTATTTTAATTCTCTT  400

seq1  GAAATTTAAAATCCTGCCTGAGCTCAGGGAATAAAGGCAAGAAAGACTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTAAAATCCTGCCTGAGCTCAGGGAATAAAGGCAAGAAAGACTTA  450

seq1  GTGATTGACCACCCAACTGCGAAATGACTGTAATTGACTGAGGTTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTGACCACCCAACTGCGAAATGACTGTAATTGACTGAGGTTGAAGA  500

seq1  AGGAGACTGTGTCCCAGAGTCTTTCCGGTCCAGAGTTGTACCCGCCCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGTGTCCCAGAGTCTTTCCGGTCCAGAGTTGTACCCGCCCCTC  550

seq1  CAGGAACACGTGACAGACAGCGCGGCAGATAAACTACAACTCCCAGAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACACGTGACAGACAGCGCGGCAGATAAACTACAACTCCCAGAGCG  600

seq1  CCACGCGGCCGGCCTGCGTTACGCTTTCTCGCTGATTGGTCACTAGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGCGGCCGGCCTGCGTTACGCTTTCTCGCTGATTGGTCACTAGGGAT  650

seq1  ATTTGAAAGGAGGTGCTGGCGCGGAAAACGAAGCGTGCCCACCCGGTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAAAGGAGGTGCTGGCGCGGAAAACGAAGCGTGCCCACCCGGTGCT  700

seq1  TGGTGGAGCTCGGGCTGGAGGACGCTGCTAGGCCGGTGAGGAACGGCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAGCTCGGGCTGGAGGACGCTGCTAGGCCGGTGAGGAACGGCAGC  750

seq1  TTCGAGGGAATTAAGGCACGGAGGGTCTGGTGAGCGCGCGCTCAAGCCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGGAATTAAGGCACGGAGGGTCTGGTGAGCGCGCGCTCAAGCCGC  800

seq1  GGTAAGTGACATTCCCATTGCTGACCTGGGAAGAAACGGGGCGTTTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGACATTCCCATTGCTGACCTGGGAAGAAACGGGGCGTTTCTGC  850

seq1  GGAGGCTCGGCGGCCCCCGAAAGGGTGTGCTCGGCGCCCAGGACCCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCGGCGGCCCCCGAAAGGGTGTGCTCGGCGCCCAGGACCCTGTG  900

seq1  GAGACCCCTGCGGT-GGCCTGGTGGGACACTGAGGACAAGGAGCGTCCTG  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAGACCCCTGCGGTGGGCCTGGTGGGACACTGAGGACAAGGAGCGTCCTG  950

seq1  GAGGAAGGAACAGTGGACTTGTCAGTTTGTAACGGGAGCCCAGTTTATAT  999
      ||||| |||||||||||||||||||||||||   ||||||||| ||||||
seq2  GAGGAGGGAACAGTGGACTTGTCAGTTTGTA--CGGAGCCCAG-TTATAT  997

seq1  CGGCCTCT-CCCCGCATAGGATTTCTGGTGGG-ATTCTTTGCCTGCTTCA  1047
      ||| |||| ||||||||| ||||||||||||| ||||||||||||||   
seq2  CGG-CTCTCCCCCGCATA-GATTTCTGGTGGGAATTCTTTGCCTGCTCAT  1045

seq1  TCCTTTGAATCCTCCTACAACTTTCAATCCCTTCTTTCCTCCAGTTATTT  1097
      ||||||  ||||| |||||   ||||   || |||||||| ||| |||| 
seq2  TCCTTTTGATCCT-CTACA--CTTCA--TCCGTCTTTCCT-CAG-TATT-  1087

seq1  CCATTACAACCCTTCGCAGGCTTCTACAAACCATTTCGTTGTATCTAGAC  1147
       || ||| |||||||||||   ||||| |  |   ||| |||||||||||
seq2  -CAATAC-ACCCTTCGCAG--CTCTACGA--CTAGTCG-TGTATCTAGAC  1130

seq1  TTTTGCCATGAGG  1160
      ||| |||| ||||
seq2  TTTGGCCAGGAGG  1143

seq1: chr15_102263273_102264440
seq2: B6Ng01-299M18.g_69_1233 (reverse)

seq1  GTTTTTG-TATGACT-GCGTGTGAATG-TATTTGTGCCTGTATATATCTA  47
      |||||||  | |||| ||||||| | | |||||||||||||| |||||||
seq2  GTTTTTGAGAAGACTGGCGTGTGGACGTTATTTGTGCCTGTA-ATATCTA  49

seq1  CATGCAGAT-GAGAACTTATATTTGAAATTGTTGGAAAATAAATTCAGAT  96
      ||||||||| ||| || |||||||||||| || | |||||||| ||||||
seq2  CATGCAGATGGAGGACCTATATTTGAAATGGTGGAAAAATAAA-TCAGAT  98

seq1  CAAAACGCCTTTCAGGTCCAGTA-TCTAGAAATTGGTCATAAAACTTGGG  145
      ||||||| | ||||||||||||| |||||||||  ||||||||||| |||
seq2  CAAAACGGC-TTCAGGTCCAGTATTCTAGAAAT--GTCATAAAACTGGGG  145

seq1  TATGTTCCTAAGGTCAGTTCTCTGCTTATGCTAAATCGGTTAACAGTTAT  195
      ||||||||||||||||| |||||||||||||| |||||||||||||||||
seq2  TATGTTCCTAAGGTCAG-TCTCTGCTTATGCT-AATCGGTTAACAGTTAT  193

seq1  GGGGTTGGGGGGATATCCTAGTGCACTTTCTAAAGAAGAAACTATTTTTG  245
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTT-GGGGGATATCCTAGTGCACTTTCTAAAGAAGAAACTATTTTTG  242

seq1  TGTTTGAAAATGAAATCAACAT-CCAAATCTATAGTGGATTCCTTATTCT  294
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TG-TTGAAAATGAAATCAACATCCCAAATCTATAGTGGATTCCTTATTCT  291

seq1  AACTTCTCTATCTTGGCTACAAATAGATTATAGTGTTATTATACATTTTA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCTATCTTGGCTACAAATAGATTATAGTGTTATTATACATTTTA  341

seq1  TGTAAATTCCATCTAAACTAGGTTCTTGATAAGTTTATGGTATTGTTAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTCCATCTAAACTAGGTTCTTGATAAGTTTATGGTATTGTTAGC  391

seq1  TTGAAATACTAACATTAGTTTATTCCATTTGGTCCTTTCTATGCAGACTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATACTAACATTAGTTTATTCCATTTGGTCCTTTCTATGCAGACTT  441

seq1  AATACTGTTATCAAGACTCAGGAAATATTTCAAGGGACTGTCCCCAAATC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTTATCAAGACTCAGGAAATATTTCAAGGGACTGTCCCCAAATC  491

seq1  ACATGTTATTAATGTTGACGTAAAAGTTATCTGTCCTCAGCCACCATCAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTATTAATGTTGACGTAAAAGTTATCTGTCCTCAGCCACCATCAC  541

seq1  ACCTTTTATTCCTAAAGAAAAGCAGAACTCAAACAAACCGTGTTATTTTA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTATTCCTAAAGAAAAGCAGAACTCAAACAAACCGTGTTATTTTA  591

seq1  CATTTATAATCATGTACTTTGCATCTCTGGAGGAAGAGGGCAGGATAACT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATAATCATGTACTTTGCATCTCTGGAGGAAGAGGGCAGGATAACT  641

seq1  CAGTGGAGTGTGCAGTATTTTGCTAGAAAATTTCAAGAAATAGAATCTTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAGTGTGCAGTATTTTGCTAGAAAATTTCAAGAAATAGAATCTTG  691

seq1  TTCAGTATGAGGTGATTAGTTACAAGCCGGCTTCGAGATGCTGAGGACTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATGAGGTGATTAGTTACAAGCCGGCTTCGAGATGCTGAGGACTA  741

seq1  TAAGCCTTTGGATAAGTTATCTGATGGTGTTTTCTCTCTTGGGTGAAAAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTTGGATAAGTTATCTGATGGTGTTTTCTCTCTTGGGTGAAAAG  791

seq1  CTGATGATTGACCCTCAGCATCTGCTACATTAACACATTACCATGAATTA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGATTGACCCTCAGCATCTGCTACATTAACACATTACCATGAATTA  841

seq1  ATTTACATCAGATTCTTTCTGCTTTTTAAATTTCCTTCTCCGGTGTCTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATCAGATTCTTTCTGCTTTTTAAATTTCCTTCTCCGGTGTCTTA  891

seq1  TTTGACCATAAAATGGAATCAGTTTCCGCTCTTGTCTCCCTGTCTGTGAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCATAAAATGGAATCAGTTTCCGCTCTTGTCTCCCTGTCTGTGAG  941

seq1  CCGCTCAGCCTTTTCTAAAGTTAAGAGACTACATTCCTCTAGTCAGGGTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCAGCCTTTTCTAAAGTTAAGAGACTACATTCCTCTAGTCAGGGTC  991

seq1  TCATGACTGAAAAATAACCTTTCCCCAAACTTTTGGCCTTCAGAATTTAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGACTGAAAAATAACCTTTCCCCAAACTTTTGGCCTTCAGAATTTAA  1041

seq1  CATAACTGGCATGCATATTGATTCTGAAATTCTTTTCATTACATTTTTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGGCATGCATATTGATTCTGAAATTCTTTTCATTACATTTTTGT  1091

seq1  TGTTTGGGGTTTTTTGTTTGTTTTGTCTCATTGAGACAGGGTTTTACTCT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGGGTTTTTTGTTTGTTTTGTCTCATTGAGACAGGGTTTTACTCT  1141

seq1  GTAGCCCAGGCTAGCCTGGAATTC  1168
      ||||||||||||||||||||||||
seq2  GTAGCCCAGGCTAGCCTGGAATTC  1165