BAC Information

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BAC

Clone NameB6Ng01-299O08
Chromosome15 (Build37)
Map Location 28,600,676 - 28,746,010
singlet/doubletdoublet
Overlap geneLOC100040702, LOC667153
Upstream geneBC052328, Trio, LOC667126, Dnahc5, EG382974, LOC100040675, LOC100040689
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-299O08.bB6Ng01-299O08.g
ACCGA094614GA094615
length1,1111,138
definitionB6Ng01-299O08.b B6Ng01-299O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,600,676 - 28,601,772)(28,744,861 - 28,746,010)
sequence
gaattctttgtatattttagatattaaccttctattggatatagttgaga
agacccttttcccgttctgtagcctgtcattttctctaaaaatgctagtt
ccctcatacagaagttccccagtttcatgtggtgcagtctattaattatt
tccagtgcctttgcatttggagctctgttcagaaagtcttttaatgtgcc
cagaagttcaaggctattgtccactttgtcttttattagattcagtgttt
tggccttatatgcttgaggtatttgatccacttgaatttgaattttttgt
tgggtgataagtatgaatctatttggattcttctacatgcggccatccag
tttgacagaatcatttgtagaaggtagtatctttttcttttttcaatgtg
tgtctctgctttctttatgaaagaatccagtgcacatagatgtgtggact
aagtcatgaggcttcagttctatcccattgatcggcattcctgtgtcatg
ccaatacatgacagaacagttcatctcagaatgacagtaagtttattttc
tggctagtccttgagcacaaaatgtctagaatgcccttgctgtattcaat
ggttgtagttcagtatcacttttccagataccttgctaagcaggcattta
accactagattctacatctccagttatgtagagaagagaattataggagt
gagaagtaaagaatactcagtggatcaccaaaaaacaaggttactcttgc
ctctcaccttcatcccaatacccaggcactactcttatcagagacataac
accacataaaaggtcctggatttagtgtgactactgtacacatttcaatg
cagtgtgccatctctgagtatttattccattgtcctttgtaacaggctac
ccctaaatgtttcattacacatctgcttctacatcatcttagttactttt
ctattgctgtgataaaataccattgtaaaaaaaaataatttattctgact
taagtttcagagggttagagtacccaattttagagcaaaggaacaaccaa
tcacttatatctatatccacaacagaaagcagatagagagagagagaagg
gggggggggaa

gaattcttacattatgtagcagctctataaatccacaattttctttctgt
ttttgagttataagagattatttgagttttaagtgagttatagtgtttaa
aatttcacattattgtttgatataaaatatattgttgaaaccaagaggca
gttccaatggtaaaacgaagcaaggtattttatttctttgtttcaaggtt
aaagtattctgtgaagtagatatttgcatttattttcatgaacacaattc
tggaataaattactgcatatctacgaagtacagatgtgattcctggcttc
aaagggttttaaaaatgcttctctaggagcaaataaattgtacttatttt
acacattattatttcaaacagagcattgaatgaagcattccttccaaagt
tttataatttaatgttattatacttattgggaatataattttagtcttca
cagagcagttaataattctatcaagaaagaactaatttctacattttatt
taaaccacttagtttccatcattgaaagttcatctcatgaaaggccatca
tcagatagttgaaagcaagtgtatagctattcaattataatatgtcacca
ctcttaaaggacacattcaaaggacagggtttttttttcacttaaaaatc
agcacatttaacgagtcagtgtctgtattaaattctctattcaagattct
ctagctctaaaataggtaacaatgtaaaatatcaagacttctccctagct
catggagctacattagaaatggaaaaatgggcctctttagagtagccagg
tgagtagttgaatgtaaaatgtattctcctggcacctgtgtttgaaccca
catgatagcgctattttagaagttttaaagaactttggacccagagaatg
tttgaaacctatctattatccaccatagaaacacgacttggaagattata
cctagtctctctccattgctgctgctgtttttttttttcttttttaaaac
ttattttatttatttacattttgatgttatcctctcccagttctgctcaa
atcccatttctccctctcccttcctgttgttctctattgagggtgctcaa
ccaactacctatctgccctatgctgagcgttaccctat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_28600676_28601772
seq2: B6Ng01-299O08.b_54_1155

seq1  TGTATATTTTAGATATTAACCTTCTATTGGATATAGTTGAGAAGACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTTTAGATATTAACCTTCTATTGGATATAGTTGAGAAGACCCTT  50

seq1  TTCCCGTTCTGTAGCCTGTCATTTTCTCTAAAAATGCTAGTTCCCTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTTCTGTAGCCTGTCATTTTCTCTAAAAATGCTAGTTCCCTCATA  100

seq1  CAGAAGTTCCCCAGTTTCATGTGGTGCAGTCTATTAATTATTTCCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTCCCCAGTTTCATGTGGTGCAGTCTATTAATTATTTCCAGTGC  150

seq1  CTTTGCATTTGGAGCTCTGTTCAGAAAGTCTTTTAATGTGCCCAGAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATTTGGAGCTCTGTTCAGAAAGTCTTTTAATGTGCCCAGAAGTT  200

seq1  CAAGGCTATTGTCCACTTTGTCTTTTATTAGATTCAGTGTTTTGGCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTATTGTCCACTTTGTCTTTTATTAGATTCAGTGTTTTGGCCTTA  250

seq1  TATGCTTGAGGTATTTGATCCACTTGAATTTGAATTTTTTGTTGGGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTGAGGTATTTGATCCACTTGAATTTGAATTTTTTGTTGGGTGAT  300

seq1  AAGTATGAATCTATTTGGATTCTTCTACATGCGGCCATCCAGTTTGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGAATCTATTTGGATTCTTCTACATGCGGCCATCCAGTTTGACAG  350

seq1  AATCATTTGTAGAAGGTAGTATCTTTTTCTTTTTTCAATGTGTGTCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTGTAGAAGGTAGTATCTTTTTCTTTTTTCAATGTGTGTCTCTG  400

seq1  CTTTCTTTATGAAAGAATCCAGTGCACATAGATGTGTGGACTAAGTCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTATGAAAGAATCCAGTGCACATAGATGTGTGGACTAAGTCATG  450

seq1  AGGCTTCAGTTCTATCCCATTGATCGGCATTCCTGTGTCATGCCAATACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCAGTTCTATCCCATTGATCGGCATTCCTGTGTCATGCCAATACA  500

seq1  TGACAGAACAGTTCATCTCAGAATGACAGTAAGTTTATTTTCTGGCTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAACAGTTCATCTCAGAATGACAGTAAGTTTATTTTCTGGCTAGT  550

seq1  CCTTGAGCACAAAATGTCTAGAATGCCCTTGCTGTATTCAATGGTTGTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGCACAAAATGTCTAGAATGCCCTTGCTGTATTCAATGGTTGTAG  600

seq1  TTCAGTATCACTTTTCCAGATACCTTGCTAAGCAGGCATTTAACCACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTATCACTTTTCCAGATACCTTGCTAAGCAGGCATTTAACCACTAG  650

seq1  ATTCTACATCTCCAGTTATGTAGAGAAGAGAATTATAGGAGTGAGAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACATCTCCAGTTATGTAGAGAAGAGAATTATAGGAGTGAGAAGTA  700

seq1  AAGAATACTCAGTGGATCACCAAAAAACAAGGTTACTCTTGCCTCTCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATACTCAGTGGATCACCAAAAAACAAGGTTACTCTTGCCTCTCACC  750

seq1  TTCATCCCAATACCCAGGCACTACTCTTATCAGAGACATAACACCACATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCAATACCCAGGCACTACTCTTATCAGAGACATAACACCACATA  800

seq1  AAAGGTCCTGGATTTAGTGTGACTACTGTACACATTTCAATGCAGTGTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCTGGATTTAGTGTGACTACTGTACACATTTCAATGCAGTGTGC  850

seq1  CATCTCTGAGTATTTATTCCATTGTCCTTTGTAACAGGCTACCCCTAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTGAGTATTTATTCCATTGTCCTTTGTAACAGGCTACCCCTAAAT  900

seq1  GTTTCATTACACATCTGCTTCTACATCATCTTAGTTACTTTTCTATTGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATTACACATCTGCTTCTACATCATCTTAGTTACTTTTCTATTGCT  950

seq1  GTGATAAAATACCATTGT-AAAAAAAATAATTTA-TCTGACTTAGGTTTC  998
      |||||||||||||||||| ||||||||||||||| ||||||||| |||||
seq2  GTGATAAAATACCATTGTAAAAAAAAATAATTTATTCTGACTTAAGTTTC  1000

seq1  AGAGGGTTAGAGTACCC-ATTTTAGAGCAAAGGAACAACCAATCACTTAT  1047
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGAGGGTTAGAGTACCCAATTTTAGAGCAAAGGAACAACCAATCACTTAT  1050

seq1  ATCTATATCCACAACCAGAAGGCAGAGAGAGAGAGAGAGA---GGGGGGG  1094
      |||||||||||||| ||||| ||||| |||||||||||||   |||||||
seq2  ATCTATATCCACAA-CAGAAAGCAGATAGAGAGAGAGAGAAGGGGGGGGG  1099

seq1  GGA  1097
      |||
seq2  GGA  1102


seq1: chr15_28744861_28746010
seq2: B6Ng01-299O08.g_68_1205 (reverse)

seq1  ATAGGGTAACGCTAGGGCATAGAGGCAGGAGTGGGTAGGTGGGTGGGGGA  50
      |||||||||||||   |||||| ||||      | ||||| | |||  ||
seq2  ATAGGGTAACGCT-CAGCATAG-GGCA------GATAGGTAGTTGGTTGA  42

seq1  GCACCCTC-ATAGAGA--CACAGGGAGGGAGA-GGAGAAAGGGGATTTTT  96
      |||||||| |||||||   ||||| ||||||| ||||||| |||||||  
seq2  GCACCCTCAATAGAGAACAACAGGAAGGGAGAGGGAGAAATGGGATTT--  90

seq1  GGAGCAGAACCTGGGAAGGAGGATAACATTCAAAATGTAAATAAATAAAA  146
       |||||||| ||||||  |||||||||| |||||||||||||||||||||
seq2  -GAGCAGAA-CTGGGA--GAGGATAACA-TCAAAATGTAAATAAATAAAA  135

seq1  TAAGTTTTTAAAAAAGAAAAAAAAAACAGGCAGCAGCAATGGAAGAAGAG  196
      |||| |||||||||||||||||||||   ||||||||||||||   ||||
seq2  TAAG-TTTTAAAAAAGAAAAAAAAAAACAGCAGCAGCAATGGA--GAGAG  182

seq1  ACTAGGTTATAATC-TCCAAGTCGTGTTTCTATGGT-GAT-ATAGATAGG  243
      |||||| ||||||| ||||||||||||||||||||| ||| |||||||||
seq2  ACTAGG-TATAATCTTCCAAGTCGTGTTTCTATGGTGGATAATAGATAGG  231

seq1  TTTCAAACATTCTCTGGGTCCAAAGTTCTTTAAAACTTCTAAAATAGCGC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACATTCTCTGGGTCCAAAGTTCTTTAAAACTTCTAAAATAGCGC  281

seq1  TATCATGTGGGTTCAAACACAGGTGCCAGGAGAATACATTTTACATTCAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATGTGGGTTCAAACACAGGTGCCAGGAGAATACATTTTACATTCAA  331

seq1  CTACTCACCTGGCTACTCTAAAGAGGCCCATTTTTCCATTTCTAATGTAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCACCTGGCTACTCTAAAGAGGCCCATTTTTCCATTTCTAATGTAG  381

seq1  CTCCATGAGCTAGGGAGAAGTCTTGATATTTTACATTGTTACCTATTTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATGAGCTAGGGAGAAGTCTTGATATTTTACATTGTTACCTATTTTA  431

seq1  GAGCTAGAGAATCTTGAATAGAGAATTTAATACAGACACTGACTCGTTAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGAGAATCTTGAATAGAGAATTTAATACAGACACTGACTCGTTAA  481

seq1  ATGTGCTGATTTTTAAGTGAAAAAAAAACCCTGTCCTTTGAATGTGTCCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGATTTTTAAGTGAAAAAAAAACCCTGTCCTTTGAATGTGTCCT  531

seq1  TTAAGAGTGGTGACATATTATAATTGAATAGCTATACACTTGCTTTCAAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTGGTGACATATTATAATTGAATAGCTATACACTTGCTTTCAAC  581

seq1  TATCTGATGATGGCCTTTCATGAGATGAACTTTCAATGATGGAAACTAAG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGATGATGGCCTTTCATGAGATGAACTTTCAATGATGGAAACTAAG  631

seq1  TGGTTTAAATAAAATGTAGAAATTAGTTCTTTCTTGATAGAATTATTAAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTAAATAAAATGTAGAAATTAGTTCTTTCTTGATAGAATTATTAAC  681

seq1  TGCTCTGTGAAGACTAAAATTATATTCCCAATAAGTATAATAACATTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGAAGACTAAAATTATATTCCCAATAAGTATAATAACATTAAA  731

seq1  TTATAAAACTTTGGAAGGAATGCTTCATTCAATGCTCTGTTTGAAATAAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACTTTGGAAGGAATGCTTCATTCAATGCTCTGTTTGAAATAAT  781

seq1  AATGTGTAAAATAAGTACAATTTATTTGCTCCTAGAGAAGCATTTTTAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTAAAATAAGTACAATTTATTTGCTCCTAGAGAAGCATTTTTAAA  831

seq1  ACCCTTTGAAGCCAGGAATCACATCTGTACTTCGTAGATATGCAGTAATT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTTGAAGCCAGGAATCACATCTGTACTTCGTAGATATGCAGTAATT  881

seq1  TATTCCAGAATTGTGTTCATGAAAATAAATGCAAATATCTACTTCACAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGAATTGTGTTCATGAAAATAAATGCAAATATCTACTTCACAGA  931

seq1  ATACTTTAACCTTGAAACAAAGAAATAAAATACCTTGCTTCGTTTTACCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTAACCTTGAAACAAAGAAATAAAATACCTTGCTTCGTTTTACCA  981

seq1  TTGGAACTGCCTCTTGGTTTCAACAATATATTTTATATCAAACAATAATG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTGCCTCTTGGTTTCAACAATATATTTTATATCAAACAATAATG  1031

seq1  TGAAATTTTAAACACTATAACTCACTTAAAACTCAAATAATCTCTTATAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTTTAAACACTATAACTCACTTAAAACTCAAATAATCTCTTATAA  1081

seq1  CTCAAAAACAGAAAGAAAATTGTGGATTTATAGAGCTGCTACATAATGTA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACAGAAAGAAAATTGTGGATTTATAGAGCTGCTACATAATGTA  1131

seq1  AGAATTC  1150
      |||||||
seq2  AGAATTC  1138


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