BAC Information

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BAC

Clone NameB6Ng01-301A20
Chromosome15 (Build37)
Map Location 79,800,571 - 79,923,552
singlet/doubletdoublet
Overlap genePdgfb, Rpl3, Syngr1
Upstream geneTriobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7
Downstream geneMap3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b, Adsl, LOC625672, Rutbc3, Mkl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301A20.bB6Ng01-301A20.g
ACCGA095467GA095468
length1,1041,061
definitionB6Ng01-301A20.b B6Ng01-301A20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,922,451 - 79,923,552)(79,800,571 - 79,801,640)
sequence
gaattccaaggcttgcctgcctttcccaagatccatgagtgggtgctaga
tctagttcatttttctccctcctgctgggcatgtcctcctttgaccctga
tgtgaagtgtaggtcctctgtgtcccactagaaccaacatgacatcacct
ccacgaagcacatccatgccacagcagggagacctctggtcctggctccc
tctctagtaggactgtgggctccctgagcatcaggaccgagcctgagcct
gagtcatgctgccctccctcccttccctcccctccgggcctggcagactc
aataaagctttgctaaatgaagccatcaccggtagaaatgacccaagcag
aaggaacgcccacgccccctcacaaagcttgtgtttccaacatcccagcc
aggggctccagagaggtcagaggaagcagcgcacctgagcaggcaggtgc
ctccagggttcccgttttacctagggcctgcaggggcatctgagagctgg
ggagggccaagaatgaataaatccggtgtcacaaaccctcgcggatatag
ctgggctgcacggccatgaagagtaacagaaacaaggctccccacaagaa
ggaaacgtaaaagatccccgtaagaccagaattaatctcaagccattcca
cgcatcagatcctgaaatggccctgaaaacgaggaaaggagggcacctct
gcaagcccgggtcacagctgacttcggttattagcccccaggggtccgtg
acccgtgtcaccaatgcaggctcttctggtcttagcacaacaggaatgga
cccccagatctacaggggcaagaccctccatgaagccagccaaccccaga
gcctacaggcctcctcaccctgggggtgcaaggcctcctgagccactcct
tcaagatgtttctgccccacccccccagtttgagctgagccccactcagc
actgggggacctgcacggactagtgggctaaagattgcgaacaaacagac
tttcttctgcttctcttatgcatgtaggaaccctttctccagaccacatt
agaatccacctcaagtgttttgtaggattcggagaagtgcgattcataaa
atgt
gaattcttaagactggcgataactacaaggaggatgaggggcaaaggaca
agggaggggtaatctcagactataccttgcacttgcagactaggcagaga
acacgcatccaggtcagggcgtgttccacatggtctacggggatatccag
gggggccaaaatagcggcctactcccaaaattggtccaggttgtgagtct
taaccttaagagcacaattaaccagagtgttttcaatgccctgaaccaat
gcctggggttccttgatggcgaagacaagggaacccatggcggggaaacc
catgttgagagaaaccataacgacgagcccaaaggaaacaaacaaggaat
gatatgacagagaaggcgacggagggactatgcctgcgtagtgtctctgg
attggaaaaggtctttggcagccaatctgactgggcgactaggccctgtg
tcaagtaccaggatgaatccaaaccaaaagggaagccgagcagacaaaga
caaaagtcagaaaagatggcggccgaggcggcgcccattcaaaggcaaaa
aaagaaaagatggccgccgctgccacaccctcaccctcaaacagagacca
agagtgagaaccgggaggaacagataaaatcgggaagaacagacaaaata
gacaaaatcgacagagaagaggtccacgcatccacactcgcaagacacac
aacataaaacactaagaggccaactcaccgcaacggagggggcacagctg
cagcacctcgtggattagaagacaacattaggaggtctataggcgagcac
agtccttagagcaacagaatgaggagaatgtagttggtccacaccggggt
ggcagatgctacctttgcctgtgcctggactactcactacgacaccctac
ttgtcttggggattggagggaggtggcgtgcagtcgatgacacagagagc
ttcccgtcccgtctgtcttcacctgctcctgctttctgtacccctgtgca
agctcttaatacctcactacgccctcattggttcccaagagcatcctctt
ctaacagcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79922451_79923552
seq2: B6Ng01-301A20.b_45_1148 (reverse)

seq1  ACATTTTATGAATCCGCAACTCTCCGATCCCTAACAAACACCTGA-GTGG  49
      ||||||||||||| ||||  |||||||  ||||  |||||| ||| ||||
seq2  ACATTTTATGAAT-CGCACTTCTCCGAATCCTACAAAACACTTGAGGTGG  49

seq1  ATTCTAAATGTGGTCTGGAGAAAGGTTCCTTCCATGCAATAGAG-AGCAG  98
      ||||| ||||||||||||||||||| | | | ||||||  |||| |||||
seq2  ATTCT-AATGTGGTCTGGAGAAAGGGTTCCTACATGCATAAGAGAAGCAG  98

seq1  A--GAAGTCTGTTTGTTCGCAATCTTTAGCCCACCTAGTCCGTGCAGGTC  146
      |   ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAGAAAGTCTGTTTGTTCGCAATCTTTAGCCCA-CTAGTCCGTGCAGGTC  147

seq1  CCCCAGTGCTGAGTGGGGCTCAGCTCAAACCTGGGGGGTGGGGCAGAAAC  196
      ||||||||||||||||||||||||||||||  ||||||||||||||||||
seq2  CCCCAGTGCTGAGTGGGGCTCAGCTCAAACTGGGGGGGTGGGGCAGAAAC  197

seq1  ATCTTGAAGGAGTGGCTCAGGAGGCCTTGCA-CCCCAGGGTGAGGAGGCC  245
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCTTGAAGGAGTGGCTCAGGAGGCCTTGCACCCCCAGGGTGAGGAGGCC  247

seq1  TGTAGGCTCTGGGGTTGGCTGGCTTCATGGAGGGTCTTGCCCCTGTAGAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTCTGGGGTTGGCTGGCTTCATGGAGGGTCTTGCCCCTGTAGAT  297

seq1  CTGGGGGTCCATTCCTGTTGTGCTAAGACCAGAAGAGCCTGCATTGGTGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGGTCCATTCCTGTTGTGCTAAGACCAGAAGAGCCTGCATTGGTGA  347

seq1  CACGGGTCACGGACCCCTGGGGGCTAATAACCGAAGTCAGCTGTGACCCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGTCACGGACCCCTGGGGGCTAATAACCGAAGTCAGCTGTGACCCG  397

seq1  GGCTTGCAGAGGTGCCCTCCTTTCCTCGTTTTCAGGGCCATTTCAGGATC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCAGAGGTGCCCTCCTTTCCTCGTTTTCAGGGCCATTTCAGGATC  447

seq1  TGATGCGTGGAATGGCTTGAGATTAATTCTGGTCTTACGGGGATCTTTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCGTGGAATGGCTTGAGATTAATTCTGGTCTTACGGGGATCTTTTA  497

seq1  CGTTTCCTTCTTGTGGGGAGCCTTGTTTCTGTTACTCTTCATGGCCGTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTCCTTCTTGTGGGGAGCCTTGTTTCTGTTACTCTTCATGGCCGTGC  547

seq1  AGCCCAGCTATATCCGCGAGGGTTTGTGACACCGGATTTATTCATTCTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCTATATCCGCGAGGGTTTGTGACACCGGATTTATTCATTCTTG  597

seq1  GCCCTCCCCAGCTCTCAGATGCCCCTGCAGGCCCTAGGTAAAACGGGAAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCCCAGCTCTCAGATGCCCCTGCAGGCCCTAGGTAAAACGGGAAC  647

seq1  CCTGGAGGCACCTGCCTGCTCAGGTGCGCTGCTTCCTCTGACCTCTCTGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGGCACCTGCCTGCTCAGGTGCGCTGCTTCCTCTGACCTCTCTGG  697

seq1  AGCCCCTGGCTGGGATGTTGGAAACACAAGCTTTGTGAGGGGGCGTGGGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTGGCTGGGATGTTGGAAACACAAGCTTTGTGAGGGGGCGTGGGC  747

seq1  GTTCCTTCTGCTTGGGTCATTTCTACCGGTGATGGCTTCATTTAGCAAAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTCTGCTTGGGTCATTTCTACCGGTGATGGCTTCATTTAGCAAAG  797

seq1  CTTTATTGAGTCTGCCAGGCCCGGAGGGGAGGGAAGGGAGGGAGGGCAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGAGTCTGCCAGGCCCGGAGGGGAGGGAAGGGAGGGAGGGCAGC  847

seq1  ATGACTCAGGCTCAGGCTCGGTCCTGATGCTCAGGGAGCCCACAGTCCTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTCAGGCTCAGGCTCGGTCCTGATGCTCAGGGAGCCCACAGTCCTA  897

seq1  CTAGAGAGGGAGCCAGGACCAGAGGTCTCCCTGCTGTGGCATGGATGTGC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGGGAGCCAGGACCAGAGGTCTCCCTGCTGTGGCATGGATGTGC  947

seq1  TTCGTGGAGGTGATGTCATGTTGGTTCTAGTGGGACACAGAGGACCTACA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTGGAGGTGATGTCATGTTGGTTCTAGTGGGACACAGAGGACCTACA  997

seq1  CTTCACATCAGGGTCAAAGGAGGACATGCCCAGCAGGAGGGAGAAAAATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATCAGGGTCAAAGGAGGACATGCCCAGCAGGAGGGAGAAAAATG  1047

seq1  AACTAGATCTAGCACCCACTCATGGATCTTGGGAAAGGCAGGCAAGCCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGATCTAGCACCCACTCATGGATCTTGGGAAAGGCAGGCAAGCCTT  1097

seq1  GGAATTC  1102
      |||||||
seq2  GGAATTC  1104

seq1: chr15_79800571_79801640
seq2: B6Ng01-301A20.g_65_1125

seq1  GAATTCTTAAGACTGGCGATAACTACAAGGAGGATGAGGGGCAAAGGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGACTGGCGATAACTACAAGGAGGATGAGGGGCAAAGGACA  50

seq1  AGGGAGGGGTAATCTCAGACTATACCTTGCACTTGCAGACTAGGCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGGTAATCTCAGACTATACCTTGCACTTGCAGACTAGGCAGAGA  100

seq1  ACACGCATCCAGGTCAGGGCGTGTTCCACATGGTCTACGGGGATATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCATCCAGGTCAGGGCGTGTTCCACATGGTCTACGGGGATATCCAG  150

seq1  GGGGGCCAAAATAGCGGCCTACTCCCAAAATTGGTCCAGGTTGTGAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCCAAAATAGCGGCCTACTCCCAAAATTGGTCCAGGTTGTGAGTCT  200

seq1  TAACCTTAAGAGCACAATTAACCAGAGTGTTTTCAATGCCCTGAACCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTAAGAGCACAATTAACCAGAGTGTTTTCAATGCCCTGAACCAAT  250

seq1  GCCTGGGGTTCCTTGATGGCGAAGACAAGGGAACCCATGGCGGGGAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGTTCCTTGATGGCGAAGACAAGGGAACCCATGGCGGGGAAACC  300

seq1  CATGTTGAGAGAAACCATAACGACGAGCCCAAAGGAAACAAACAAGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAGAGAAACCATAACGACGAGCCCAAAGGAAACAAACAAGGAAT  350

seq1  GATATGACAGAGAAGGCGACGGAGGGACTATGCCTGCGTAGTGTCTCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGACAGAGAAGGCGACGGAGGGACTATGCCTGCGTAGTGTCTCTGG  400

seq1  ATTGGAAAAGGTCTTTGGCAGCCAATCTGACTGGGCGACTAGGCCCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAAAGGTCTTTGGCAGCCAATCTGACTGGGCGACTAGGCCCTGTG  450

seq1  TCAAGTACCAGGATGAATCCAAACCAAAAGGGAAGCCGAGCAGACAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACCAGGATGAATCCAAACCAAAAGGGAAGCCGAGCAGACAAAGA  500

seq1  CAAAAGTCAGAAAAGATGGCGGCCGAGGCGGCGCCCATTCAAAGGCAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCAGAAAAGATGGCGGCCGAGGCGGCGCCCATTCAAAGGCAAAA  550

seq1  AAAGAAAAGATGGCCGCCGCTGCCACACCCTCACCCTCAAACAGAGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGATGGCCGCCGCTGCCACACCCTCACCCTCAAACAGAGACCA  600

seq1  AGAGTGAGAACCGGGAGGAACAGATAAAATCGGGAAGAACAGACAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGAACCGGGAGGAACAGATAAAATCGGGAAGAACAGACAAAATA  650

seq1  GACAAAATCGACAGAGAAGAGGTCCACGCATCCACACTCGCAAGACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAATCGACAGAGAAGAGGTCCACGCATCCACACTCGCAAGACACAC  700

seq1  AACATAAAACACTAAGAGGCCAACTCACCGCAACGGAGGGGGCACAGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAACACTAAGAGGCCAACTCACCGCAACGGAGGGGGCACAGCTG  750

seq1  CAGCACCTCGTGGATTAGAAGACAACATTAGGAGGTCTATAGGCGAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTCGTGGATTAGAAGACAACATTAGGAGGTCTATAGGCGAGCAC  800

seq1  AGTCCTTAGAGCAACAGAATGAGGAGAATGTAGTTGGTCCACACC-GGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AGTCCTTAGAGCAACAGAATGAGGAGAATGTAGTTGGTCCACACCGGGGT  850

seq1  GGCAGATGCTACCTTTGCCTGTGCCTGGACTACTCACTACGACACCCTAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGATGCTACCTTTGCCTGTGCCTGGACTACTCACTACGACACCCTAC  900

seq1  TTGTCCTTGGGGATTGGAGGGGAGGTGGCGTGCAGTCGATGACACAGAGA  949
      |||| ||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTGT-CTTGGGGATTGGA-GGGAGGTGGCGTGCAGTCGATGACACAGAGA  948

seq1  GCTTCCCGTCCCGTCCTGTTCTTCACCTGCTCCTGCTTTCTGTACCCCTG  999
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  GCTTCCCGTCCCGT-CTG-TCTTCACCTGCTCCTGCTTTCTGTACCCCTG  996

seq1  TGCAAGCTCCTTTAATACCCTCCACCTACGCCCTCATTGG-TCCCAAGAA  1048
      |||||||||  |||||| ||||   ||||||||||||||| |||||||  
seq2  TGCAAGCTC--TTAATA-CCTC--ACTACGCCCTCATTGGTTCCCAAG--  1039

seq1  AGCAT-CTCTTCTAAACAGCAGT  1070
      ||||| ||||||| |||||||||
seq2  AGCATCCTCTTCT-AACAGCAGT  1061