BAC Information

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BAC

Clone NameB6Ng01-301C20
Chromosome15 (Build37)
Map Location 61,599,639 - 61,721,256
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301C20.bB6Ng01-301C20.g
ACCGA095559GA095560
length1,1001,173
definitionB6Ng01-301C20.b B6Ng01-301C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,599,639 - 61,600,730)(61,720,715 - 61,721,256)
sequence
gaattccctatctgaaccccacacataccccacacatcagtcaggccact
agatgctcagtcctaccattcagcacatagaactaaaactattcttgcag
tgaggtttgtagctgaggaccacaccttcattgggtctcatccattccat
tccagagctacagataaataatatctgttactgcagtggagagcatagat
aggcattgcagccaaactctaaactctggatgccataactctatgatcct
aggaaagtaaccccttctgacactcagtttgctcatctttggcgtagtcc
tcctgagagcatctcccacatagagaagctgtaagaacttagaaaacact
acctgctaattgactggcaccctgtctgacaagcagtcagccacctccta
taggctcagcaatcatctctctttcatgaacaatggcctgacaaggccca
tgtgtctttcataagtgccagtggaaaaagggaactgaagcatttaaact
ttgatctccaggaagatgacccaaccaggaaggaaactcctatgttccta
ttgaaagccatgggcctcgggctatgtgatttaggaaagccagtgccagt
gcttgtctttctggattttcccccactcagtggaagtggacatcaagatc
cttcctggatctgacaaagcaccgtcctgagctatgggagataggagaag
gcctgctgaccttccttctccctctcattccagtccattccagtataata
ccttaccatgaattctgcttttaatttaggaatgaactagtcagtttatc
atcaaattagggaagccctaatagtactgttgagaattcaacacacccac
actgaaaaataatctgaagatcacaggcctggcactgggaagccatggca
ctctggctcaccaaaggtaagggtcaaatttgatccaggtgtgcagatga
ccatgtatctcctatgctttagggcaaaccagatagatgttactataaag
cctttgtccacttttctggtgtcttttcaatactgacagctcctaacctt
gcagaaataagaaagttcctaacagctccactgaaattattcttctgtct

gaattctctttttataagatggtgtagtattgacatggaaccaacatata
tttcttatatactctgacatctctggatggcttcaactacttaatataat
gcacacactatgtattaatttttaaatgtgtttcttggagaataataggc
aatctgtacattttcagcacaaacaaaagtgttcaaatattttaagcccc
aattagttgaatctctgtgtactggcaaatatttctattcttgttataca
gtacctgatacacgctgcttaaaggaggagaagtttctcttggctcacac
ttagagagtcgcagtcctttgtggtgaggaaagtatggcagatagggttt
tcattacatagctcttatgttacttaacaacagatgggaaacagagacac
agggctggaggtgaagctatcgtagaacccagaagccctgttcttcgggc
cccatgtttgtcacctagctattatgtccaaaagactctgcagcttttct
aagcaactctactagttaaagatcacgtgttaagatacaaaagtctctct
gtgtgtgtgggataattcatatttacggcatagcaccatgggtttggaca
ttgtcattatggaggagtgacaatacatactgcaatgcaaagccaaatga
acatggcctctggaatctggtgtggctgtgtttgcaacactgaaggatga
ccttgagtcacttttttctagccttgttgatgaggaaatgggagaggcag
tacttgaaacaccatgcagccttgctgaacaacaagcaacatgtgtcttg
agagtgatactacagtcaaggttttctcctcagacaccaacctcgttact
ccgatttgcttccatagaaaggaggaataggaattgctgatgcttttgtc
cctacttgccacctttagcttatggtgcaatctattttgtcaactcttta
gttcctttatgtcttctcccttcattttcctcccgagtaggaggagtacc
tgtctcagaggcttcctaagtccacccacctgggcctcacttctctccgt
tctagtgtctcaccacatttcttgttcatctgccagttaacagggaggct
gcctggctgggcctgccttggctgctgaatcctctctgtgcctgcagtac
atgcctggggcgcccccttttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61599639_61600730
seq2: B6Ng01-301C20.b_44_1143

seq1  GAATTCCCTATCTGAACCCCACACATACCCCACACATCAGTCAGGCCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATCTGAACCCCACACATACCCCACACATCAGTCAGGCCACT  50

seq1  AGATGCTCAGTCCTACCATTCAGCACATAGAACTAAAACTATTCTTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTCAGTCCTACCATTCAGCACATAGAACTAAAACTATTCTTGCAG  100

seq1  TGAGGTTTGTAGCTGAGGACCACACCTTCATTGGGTCTCATCCATTCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTTGTAGCTGAGGACCACACCTTCATTGGGTCTCATCCATTCCAT  150

seq1  TCCAGAGCTACAGATAAATAATATCTGTTACTGCAGTGGAGAGCATAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAGCTACAGATAAATAATATCTGTTACTGCAGTGGAGAGCATAGAT  200

seq1  AGGCATTGCAGCCAAACTCTAAACTCTGGATGCCATAACTCTATGATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTGCAGCCAAACTCTAAACTCTGGATGCCATAACTCTATGATCCT  250

seq1  AGGAAAGTAACCCCTTCTGACACTCAGTTTGCTCATCTTTGGCGTAGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGTAACCCCTTCTGACACTCAGTTTGCTCATCTTTGGCGTAGTCC  300

seq1  TCCTGAGAGCATCTCCCACATAGAGAAGCTGTAAGAACTTAGAAAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGAGCATCTCCCACATAGAGAAGCTGTAAGAACTTAGAAAACACT  350

seq1  ACCTGCTAATTGACTGGCACCCTGTCTGACAAGCAGTCAGCCACCTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTAATTGACTGGCACCCTGTCTGACAAGCAGTCAGCCACCTCCTA  400

seq1  TAGGCTCAGCAATCATCTCTCTTTCATGAACAATGGCCTGACAAGGCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTCAGCAATCATCTCTCTTTCATGAACAATGGCCTGACAAGGCCCA  450

seq1  TGTGTCTTTCATAAGTGCCAGTGGAAAAAGGGAACTGAAGCATTTAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTTCATAAGTGCCAGTGGAAAAAGGGAACTGAAGCATTTAAACT  500

seq1  TTGATCTCCAGGAAGATGACCCAACCAGGAAGGAAACTCCTATGTTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCCAGGAAGATGACCCAACCAGGAAGGAAACTCCTATGTTCCTA  550

seq1  TTGAAAGCCATGGGCCTCGGGCTATGTGATTTAGGAAAGCCAGTGCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCCATGGGCCTCGGGCTATGTGATTTAGGAAAGCCAGTGCCAGT  600

seq1  GCTTGTCTTTCTGGATTTTCCCCCACTCAGTGGAAGTGGACATCAAGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCTTTCTGGATTTTCCCCCACTCAGTGGAAGTGGACATCAAGATC  650

seq1  CTTCCTGGATCTGACAAAGCACCGTCCTGAGCTATGGGAGATAGGAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGATCTGACAAAGCACCGTCCTGAGCTATGGGAGATAGGAGAAG  700

seq1  GCCTGCTGACCTTCCTTCTCCCTCTCATTCCAGTCCATTCCAGTATAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGACCTTCCTTCTCCCTCTCATTCCAGTCCATTCCAGTATAATA  750

seq1  CCTTACCATGAATTCTGCTTTTAATTTAGGAATGAACTAGTCAGTTTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCATGAATTCTGCTTTTAATTTAGGAATGAACTAGTCAGTTTATC  800

seq1  ATCAAATTAGGGAAGCCCTAATAGTACTGTTGAGAATTCAACACACCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATCAAATTAGGGAAGCCCTAATAGTACTGTTGAGAATTCAACACACCCAC  850

seq1  ACTGAAAAATAATCTGAAGATCACAGGCCTGGCACTGGGAAGCCATGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAATAATCTGAAGATCACAGGCCTGGCACTGGGAAGCCATGGCA  900

seq1  CTCTGGCTCACC-AAGGTAAGGGTCAAATTTGATCCAGGTGTGCAGATGA  949
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTCACCAAAGGTAAGGGTCAAATTTGATCCAGGTGTGCAGATGA  950

seq1  CCATGTATCTCCTATGCTTTAGGGCAAACCAGATAGATGTTACTATAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATCTCCTATGCTTTAGGGCAAACCAGATAGATGTTACTATAAAG  1000

seq1  CCTTTGTCCACTTTTCTTGTGTCTTTTCCATACTGACAGCTCCTAACCTT  1049
      ||||||||||||||||| |||||||||| |||||||||||||||||||||
seq2  CCTTTGTCCACTTTTCTGGTGTCTTTTCAATACTGACAGCTCCTAACCTT  1050

seq1  GCAGAA--TAGAAAGTCCTTAACAGCT-CACTGAA--TAT--CTCTGTCT  1092
      ||||||   ||||||| | |||||||| |||||||  |||   |||||||
seq2  GCAGAAATAAGAAAGTTCCTAACAGCTCCACTGAAATTATTCTTCTGTCT  1100

seq1: chr15_61720715_61721256
seq2: B6Ng01-301C20.g_693_1238 (reverse)

seq1  TAAAA---GGGCGCCC--AGCATGTCACTGCAGGCACAGAGAGGATTTTC  45
      |||||   ||||||||   |||||| |||||||||||||||||||||   
seq2  TAAAAAGGGGGCGCCCCAGGCATGT-ACTGCAGGCACAGAGAGGATT---  46

seq1  CCAGGCAGCC-AGGCA-GCCAAGGCCAGCAGCTTCCCTGTAAACT-GCAG  92
       || |||||| ||||| ||| || |  ||||| ||||||| |||| ||||
seq2  -CA-GCAGCCAAGGCAGGCCCAGCCAGGCAGCCTCCCTGTTAACTGGCAG  94

seq1  ATGAAACAGAAAATGT-GTGAGACACTAAGAAAGGAGAGAAGTGAGGCCC  141
      ||| ||||  |||||| |||||||||| |||| |||||||||||||||||
seq2  ATG-AACAAGAAATGTGGTGAGACACT-AGAACGGAGAGAAGTGAGGCCC  142

seq1  AGGT-GGTGGACTTAGGAAGCTTCTGAGACAGGTACTCCTCCTACTCGGG  190
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGTGGGTGGACTTAGGAAGCCTCTGAGACAGGTACTCCTCCTACTCGGG  192

seq1  AGGAAATTGAAGGGAGAAGACATAAAGGAACTAAAGAGTTGACAAAATAG  240
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGAAGGGAGAAGACATAAAGGAACTAAAGAGTTGACAAAATAG  242

seq1  ATTGCACCATAAGCT-AAGGTGGCAAGTAGGGACAAAAGCATCAGCAATT  289
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTGCACCATAAGCTAAAGGTGGCAAGTAGGGACAAAAGCATCAGCAATT  292

seq1  CCTATTCCTCC-TTCTATGGAAGCAAATCGGAGTAACGAGGTTGGTGTCT  338
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCCTCCTTTCTATGGAAGCAAATCGGAGTAACGAGGTTGGTGTCT  342

seq1  GAGGAGAAAACCTTGACTGTAGTATCACTCTCAAGACACATGTTGCTTGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAAACCTTGACTGTAGTATCACTCTCAAGACACATGTTGCTTGT  392

seq1  TGTTCAGCAAGGCTGCATGGTGTTTCAAGTACTGCCTCTCCCATTTCCTC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCAAGGCTGCATGGTGTTTCAAGTACTGCCTCTCCCATTTCCTC  442

seq1  ATCAACAAGGCTAGAAAAAAGTGACTCAAGGTCATCCTTCAGTGTTGCAA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACAAGGCTAGAAAAAAGTGACTCAAGGTCATCCTTCAGTGTTGCAA  492

seq1  ACACAGCCACACCAGATTCCAGAGGCCATGTTCATTTGGCTTTGCATTGC  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCCACACCAGATTCCAGAGGCCATGTTCATTTGGCTTTGCATTGC  542

seq1  AGTA  542
      ||||
seq2  AGTA  546