BAC Information

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BAC

Clone NameB6Ng01-301D20
Chromosome15 (Build37)18 (Build37)
Map Location 61,088,292 - 61,089,44328,707,606 - 28,708,052
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg, LOC100040323
Downstream geneMyc, Pvt1, LOC100040584, H2afy3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301D20.bB6Ng01-301D20.g
ACCGA095602GA095603
length1,125941
definitionB6Ng01-301D20.b B6Ng01-301D20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,088,292 - 61,089,443)(28,707,606 - 28,708,052)
sequence
gaattctagagccatagtgaaaccaaccaacctaccagtcatgacaacaa
tggaaacacatggtattcatatgaaaacaacagacatacaccagcggaaa
aaaaaaccccagaagatccagaaacatagctacactataatagtcatctg
attctttacaaagacacacattagagaagataaattctctttaacatata
ctgtgagaagaggatatccacatatagaagaataaaactaaattcttgta
caaaaaaaaacaatggataaagataaagatatttaatattttaaatgtat
atgttttcagaatttcatacatgggtactgtatttacaccctttcacccc
actgcatccatgaaatcgacctcaaattaaagaccttatcataagactct
agcttttaaatttataagagagaaatacttcaagatgtaggcataaggat
caacttttggaagaggacactaatagaccaaaaaaataaaataatagcaa
catgtaaacatcacatcaaacacaagggtaagggaaacactgatagaaat
aataagcagatagaaacaatatagaaagactaagaatgtaagaccatatc
tggcatcttggagagaaattcttaaagaaaaggaggctaccaacaaaagg
agtggtaaggaagagagatgtgggaagaatttgagggagattagctggga
aggacaagaggggttaaaaagaaggagttgattcagttctatctcaacga
aaacagtaaaacttaaacaccaaagaacaataatttaatcaataagtaaa
taaatttctcaataaagaattctcaaaagaaatatatgtgacattagcta
cctatgagatctgcagctcattttagccatcagggaaatggaagtcagaa
cacactgacattttacctcatctaggccaagaaaacaatacagagaggat
ggcgaggactgtggccagtaaacatactgggggcatacagagtcagcaag
agattcttcagagcactaaaagggggctattgataattgaaagagagcag
aagaaagccagagaattgtctgtaaggatgactagatgataaaccacggg
cactggcatccacatattgaatgtc
gaattcatattaatcgaatggtgctgtgggaaagttttgttctgggtgat
gattctgctgagtttgatgatttttggtatgatagggatgattctgaaca
tgcagttagaaagtgagcaggaacatgagaacatggggcttagattagat
taaggtgtattcagtgaagaggagaaaagcatgctgagaagtgtcagtga
gaaaactggaaggaagtatggctggatgccagttactctagaggagtaag
gcttggaaattgaaataaaactgtgtgcggtgaaccactcaccacgagaa
ggattctaggctcccagagggaattaaggaattgggggtagatgcagaga
tttggaagccactagcatatagaatgtgccatttttttattttgtctttt
tattaggtatttatttcatttacatttccaatgctatcccaaaagtcccc
cacccactcccccacccacccactcctacttcttggccctggcattcccc
tgtactgaggcagataaagtttgcacgaccaatgggcctctctttccact
gatggccgactaggccatcttctgatacatatgcagctagagtcaagagc
tctggggtactggttagttcatattgttgttccacctatagggttgcaga
ttcctttagctccttggctactttctctagctcctcagaatgtgccattt
ttaaagtatggactttattttgcagagtgagaaagcagcaaggtccagga
tgggaccatttagggggtaaagaaaggaacctgtagagaccatattcaat
ggttaggctcttggttgaggcctggggccactcacccacctcaaacatat
gaatccagaattccttctgtcaaaaaggaaatgcagggacaaagagtgga
gcagagactgaaggaaaggccatccatagactgccccacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_61088292_61089443
seq2: B6Ng01-301D20.b_40_1164

seq1  GAATTCTAGAGCCATAGTGAAACCAACCAACCTACCAGTCATGACAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAGCCATAGTGAAACCAACCAACCTACCAGTCATGACAACAA  50

seq1  TGGAAACACATGGTATTCATATGAAAACAACAGACATACACCAGCGGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACACATGGTATTCATATGAAAACAACAGACATACACCAGCGGAAA  100

seq1  AAAAAACCCCAGAAGATCCAGAAACATAGCTACACTATAATAGTCATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCCAGAAGATCCAGAAACATAGCTACACTATAATAGTCATCTG  150

seq1  ATTCTTTACAAAGACACACATTAGAGAAGATAAATTCTCTTTAACATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTACAAAGACACACATTAGAGAAGATAAATTCTCTTTAACATATA  200

seq1  CTGTGAGAAGAGGATATCCACATATAGAAGAATAAAACTAAATTCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGAAGAGGATATCCACATATAGAAGAATAAAACTAAATTCTTGTA  250

seq1  CAAAAAAAAACAATGGATAAAGATAAAGATATTTAATATTTTAAATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAACAATGGATAAAGATAAAGATATTTAATATTTTAAATGTAT  300

seq1  ATGTTTTCAGAATTTCATACATGGGTACTGTATTTACACCCTTTCACCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCAGAATTTCATACATGGGTACTGTATTTACACCCTTTCACCCC  350

seq1  ACTGCATCCATGAAATCGACCTCAAATTAAAGACCTTATCATAAGACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATCCATGAAATCGACCTCAAATTAAAGACCTTATCATAAGACTCT  400

seq1  AGCTTTTAAATTTATAAGAGAGAAATACTTCAAGATGTAGGCATAAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTAAATTTATAAGAGAGAAATACTTCAAGATGTAGGCATAAGGAT  450

seq1  CAACTTTTGGAAGAGGACACTAATAGACCAAAAAAATAAAATAATAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTGGAAGAGGACACTAATAGACCAAAAAAATAAAATAATAGCAA  500

seq1  CATGTAAACATCACATCAAACACAAGGGTAAGGGAAACACTGATAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAACATCACATCAAACACAAGGGTAAGGGAAACACTGATAGAAAT  550

seq1  AATAAGCAGATAGAAACAATATAGAAAGACTAAGAATGTAAGACCATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGCAGATAGAAACAATATAGAAAGACTAAGAATGTAAGACCATATC  600

seq1  TGGCATCTTGGAGAGAAATTCTTAAAGAAAAGGAGGCTACCAACAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCTTGGAGAGAAATTCTTAAAGAAAAGGAGGCTACCAACAAAAGG  650

seq1  AGTGGTAAGGAAGAGAGATGTGGGAAGAATTTGAGGGAGATTAGCTGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTAAGGAAGAGAGATGTGGGAAGAATTTGAGGGAGATTAGCTGGGA  700

seq1  AGGACAAGAGGGGTTAAAAAGAAGGAGTTGATTCAGTTCTATCTCAACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAGAGGGGTTAAAAAGAAGGAGTTGATTCAGTTCTATCTCAACGA  750

seq1  AAACAGTAAAACTTAAACACCAAAGAACAAATAATTTAATCAATAAGTAA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAACAGTAAAACTTAAACACCAAAGAAC-AATAATTTAATCAATAAGTAA  799

seq1  ATAAATTTCTCAAATAAAGAATTCTCAAAAAGAAATATATGTGACAATTA  850
      ||||||||||| |||||||||||||| |||||||||||||||||| ||||
seq2  ATAAATTTCTC-AATAAAGAATTCTC-AAAAGAAATATATGTGAC-ATTA  846

seq1  GCTACCTATGAGATCTGCAGCTCATTTTAGCCATCAGGGAAATGGAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCTATGAGATCTGCAGCTCATTTTAGCCATCAGGGAAATGGAAGTC  896

seq1  AGAACAACACTGACATTTTACCTCATCTAGGCCAAGAAAACAAATAACAG  950
      ||||| |||||||||||||||||||||||||||||||||||||   ||||
seq2  AGAAC-ACACTGACATTTTACCTCATCTAGGCCAAGAAAACAA--TACAG  943

seq1  AAGAGGATGGCGAGGACTGTGGCAAGTAAACAATACTGGGGGCAATACAG  1000
       |||||||||||||||||||||| ||||||| ||||||||||| ||||||
seq2  -AGAGGATGGCGAGGACTGTGGCCAGTAAAC-ATACTGGGGGC-ATACAG  990

seq1  AAGTCAGCAAAGAGATTCTTCAGGAGCAACTAAAAAGGGGGCTATTGAAT  1050
       ||||||| ||||||||||||| |||| ||| ||||||||||||||| ||
seq2  -AGTCAGC-AAGAGATTCTTCA-GAGC-ACT-AAAAGGGGGCTATTG-AT  1034

seq1  AATTTGAAAAGAGAGCAGAAGAAAAGCCAGAGAAATGTCTGTAAAGGATG  1100
      ||||   |||||||||||||| |||||||||||| ||||||| |||||||
seq2  AATT--GAAAGAGAGCAGAAG-AAAGCCAGAGAATTGTCTGT-AAGGATG  1080

seq1  ACAAAGGATGAATAAAAACAACGGGCACTGGCATCACACATATGAAAATG  1150
      || |  ||||   | |||| ||||||||||||||| |||||||   ||||
seq2  ACTA--GATG---ATAAACCACGGGCACTGGCATC-CACATAT-TGAATG  1123

seq1  TC  1152
      ||
seq2  TC  1125

seq1: chr18_28707606_28708052
seq2: B6Ng01-301D20.g_383_753

seq1  AGAGGGAATTAAGGAAGTAAATATTAATGATATGAATAATGTGATTATTT  50
      |||||||||||||||       |||   | ||   ||   | ||||    
seq2  AGAGGGAATTAAGGA-------ATTGGGGGTA--GATGCAGAGATT----  37

seq1  ATGGTAATGACTGATATATAATGTAAAAAATATAGCAATATATAATATGT  100
       ||| |   ||                     |||| ||||| ||| || 
seq2  -TGGAAGCCAC---------------------TAGC-ATATAGAATGTG-  63

seq1  ATGTTATGTTTATATGAAACACTATATATTTTTTTTTAATTTTTATTTTT  150
                           | |      ||||||||  |||| | |||
seq2  ---------------------CCA------TTTTTTTA--TTTTGTCTTT  84

seq1  TTATTAACTAGGTATTTTCTTCATTTACAGTTCCAATGCTAACCCATAAG  200
      ||||    |||||||||  |||||||||| ||||||||||| |||| |||
seq2  TTAT----TAGGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAG  130

seq1  TCCCCCAAACCCTCCCC------TCCACTCCCACTTCTTGGCCCTGACGT  244
      |||||||  | ||||||       ||||||| |||||||||||||| | |
seq2  TCCCCCACCCACTCCCCCACCCACCCACTCCTACTTCTTGGCCCTGGCAT  180

seq1  TCCCCTGTACTGAGGCATATAAAATTTGCAAGACCAATGGGCCTCTCTTT  294
      ||||||||||||||||| ||||| |||||| |||||||||||||||||||
seq2  TCCCCTGTACTGAGGCAGATAAAGTTTGCACGACCAATGGGCCTCTCTTT  230

seq1  CCACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAACTAGAGACA  344
      |||||||||||||||||||||||||||||||||||||||| |||||| ||
seq2  CCACTGATGGCCGACTAGGCCATCTTCTGATACATATGCAGCTAGAGTCA  280

seq1  CGAGCTCAGCGGGGGGTGGGGGGGTACTGGTTAGTTCATATTGTTGTTCC  394
       ||||||             ||||||||||||||||||||||||||||||
seq2  AGAGCTC------------TGGGGTACTGGTTAGTTCATATTGTTGTTCC  318

seq1  ACCTATAGGGTTGCAAACCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTC  444
      ||||||||||||||| |  ||||||||||||||| |||||||||||||||
seq2  ACCTATAGGGTTGCAGATTCCTTTAGCTCCTTGGCTACTTTCTCTAGCTC  368

seq1  CTC  447
      |||
seq2  CTC  371