BAC Information

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BAC

Clone NameB6Ng01-302E13
Chromosome15 (Build37)
Map Location 61,868,306 - 62,022,411
singlet/doubletdoublet
Overlap genePvt1
Upstream geneLOC100040323, Myc
Downstream geneLOC100040584, H2afy3, LOC100040430, Tsg101-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302E13.bB6Ng01-302E13.g
ACCGA096373GA096374
length1,059886
definitionB6Ng01-302E13.b B6Ng01-302E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,021,364 - 62,022,411)(61,868,306 - 61,869,191)
sequence
gaattctctctttagaccagactggcctcaagctcagagctctgagtgcc
tctgcctcccaagtgctgggattacaggtgtgtaccacgtgtctggctct
tgttcaagagctttaatatgttgcttaaagaagacaacctcctagagaaa
acctagtcacattctgtatatgaagcctgttggtttagatggtagtacac
tcagccttgggaggcatgggtggaaaagatagcgcttttcaccttacgaa
tacaatgtaatattgctttcaggcccagatgctttcctgaaggtttcagg
accagctggctctccactgatcatcgcctccacatttcccagaagtctga
aagggtaaacagggctgctcattggaaggactctagtgtttaacagagtc
tcaggatgtattcatttactgaatggagtcaaatgagtgaatgagtcata
ccagtaaaacagaatggggggaaaaaaaagcaagcaagaaagaaagaaat
cctaactccaaggcaacgcacttgaatgcttaggtgcataggtaattatg
gaaacctcagtatgtgccagcaatgtgtaagccagggataatgttaagaa
caatcttgtacttaaagggcaatgattatctgcatttcgtaacaaagcag
ggtagaaagggggacaaagaagtggtctatctctcttttgagcacgtttc
tagagtcagcatggcagacaaaaccctctcagagctggaccttgtttcta
ctttggacatgagagccagtgagctaatgaaaggcagtgtggctgtagcc
cggcttccctcacacctctctggcctaggtgcagtgcgtggctcagaaca
gtccatggttaataccttgtaaaacccacagtggaaggcaaggcgcctgg
cccagaggaacccagtagtactttctgaaaggtaaccactgactctctaa
atgtcagaggaggccccacttgcacgttaaattaagaagagcccatcaat
gggttctgggaactagcccatcaaaggccaccctggtgacttctatttct
tggagtaga
gaattcagaaccctcttcactctctagcacaagaaggagataatctgaag
gagataatcggaagatctgttcggtcactctcagggtggaaaccaaccac
acacagcgcgattatccgtgcatatcgcactggcacacacgagtatggta
aattttctcttcaacagagacatcttcatgtggctaagaagtaatgaaag
tgaagacattgaagggggaacgtagagggagggaggagataaagactctc
tgagagattgaaataaagtgaggtatagtgtgctgagagaagagtggacc
cgcgttactttccgcgatcctggtatcacctagttatgcaacccgctttc
cacaggactccggtttccctctaggatctgagtctacctcatctttcatt
cccctttctggttgtagcacgttgccgcgcttgactaaatggtactagag
acgtgcacctgttcggtgctggattgaatacagcgaaaagaatatcgtgg
tatacgcgtgcctttcacaccagccttcgttctttgcagaggcttttgca
catttgagaggttagtgtaataccctgtacggaccaagaatggaggatgc
tgcagacaggtggtcctctctcagctagagtttgcttagtacgtccttct
ctccagaaccacagatgatggatggtacccaggactgctctcagatgaga
gttctgaaatagaacagattcgggggggtcttctgtaggaactactgacc
tattttctgagcagtttggtccttttaattcactggagtctccttcccta
tccgaaaagtggaagactgctaagcttcaaggtgaagggggatgggatgt
ctaccttaaaaggaatagtgtggggggaaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_62021364_62022411
seq2: B6Ng01-302E13.b_44_1102 (reverse)

seq1  TCTACT-CAAG-AATAG-AGTCAC--AGGTGG-CTTTGAT-GGCTAGTTT  43
      |||||| |||| ||||| ||||||   ||||| ||||||| |||||||| 
seq2  TCTACTCCAAGAAATAGAAGTCACCAGGGTGGCCTTTGATGGGCTAGTTC  50

seq1  CCAGAA-CCATTGAT-GGCTCTTCTTAA-TTAACGTGCAAGT-GGGCCTC  89
      |||||| |||||||| |||||||||||| ||||||||||||| |||||||
seq2  CCAGAACCCATTGATGGGCTCTTCTTAATTTAACGTGCAAGTGGGGCCTC  100

seq1  CTCTGACATTTAGAGAGTCAGTGGTTACCTTTCAGAAAGTACTACTGGGT  139
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTCTGACATTTAGAGAGTCAGTGGTTACCTTTCAGAAAGTACTACTGGG-  149

seq1  TTCCTCTGGGCCAGGCGCCTTGCCTTCCACCTGT-GGTTTTACAAGGTAT  188
      ||||||||||||||||||||||||||||| |||| |||||||||||||||
seq2  TTCCTCTGGGCCAGGCGCCTTGCCTTCCA-CTGTGGGTTTTACAAGGTAT  198

seq1  T-ACCATGGACTGTTCTGAGCCACGCACTGCACCTAGGCCAGAGAGGTGT  237
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATGGACTGTTCTGAGCCACGCACTGCACCTAGGCCAGAGAGGTGT  248

seq1  GAGGGAAGCCGGGCTACAGCCACACTGCCTTTCATTAGCTCACTGGCTCT  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAAGCCGGGCTACAGCCACACTGCCTTTCATTAGCTCACTGGCTCT  298

seq1  CATGTCCAAAGTAGAAACAAGGTCCAGCTCTGAGAGGGTTTTGTCTGCCA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAAAGTAGAAACAAGGTCCAGCTCTGAGAGGGTTTTGTCTGCCA  348

seq1  TGCTGACTCTAGAAACGTGCTCAAAAGAGAGATAGACCACTTCTTTGTCC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACTCTAGAAACGTGCTCAAAAGAGAGATAGACCACTTCTTTGTCC  398

seq1  CCCTTTCTACCCTGCTTTGTTACGAAATGCAGATAATCATTGCCCTTTAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTACCCTGCTTTGTTACGAAATGCAGATAATCATTGCCCTTTAA  448

seq1  GTACAAGATTGTTCTTAACATTATCCCTGGCTTACACATTGCTGGCACAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGATTGTTCTTAACATTATCCCTGGCTTACACATTGCTGGCACAT  498

seq1  ACTGAGGTTTCCATAATTACCTATGCACCTAAGCATTCAAGTGCGTTGCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTTTCCATAATTACCTATGCACCTAAGCATTCAAGTGCGTTGCC  548

seq1  TTGGAGTTAGGATTTCTTTCTTTCTTGCTTGCTTTTTTTTCCCCCCATTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTAGGATTTCTTTCTTTCTTGCTTGCTTTTTTTTCCCCCCATTC  598

seq1  TGTTTTACTGGTATGACTCATTCACTCATTTGACTCCATTCAGTAAATGA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACTGGTATGACTCATTCACTCATTTGACTCCATTCAGTAAATGA  648

seq1  ATACATCCTGAGACTCTGTTAAACACTAGAGTCCTTCCAATGAGCAGCCC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCTGAGACTCTGTTAAACACTAGAGTCCTTCCAATGAGCAGCCC  698

seq1  TGTTTACCCTTTCAGACTTCTGGGAAATGTGGAGGCGATGATCAGTGGAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACCCTTTCAGACTTCTGGGAAATGTGGAGGCGATGATCAGTGGAG  748

seq1  AGCCAGCTGGTCCTGAAACCTTCAGGAAAGCATCTGGGCCTGAAAGCAAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCTGGTCCTGAAACCTTCAGGAAAGCATCTGGGCCTGAAAGCAAT  798

seq1  ATTACATTGTATTCGTAAGGTGAAAAGCGCTATCTTTTCCACCCATGCCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATTGTATTCGTAAGGTGAAAAGCGCTATCTTTTCCACCCATGCCT  848

seq1  CCCAAGGCTGAGTGTACTACCATCTAAACCAACAGGCTTCATATACAGAA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGGCTGAGTGTACTACCATCTAAACCAACAGGCTTCATATACAGAA  898

seq1  TGTGACTAGGTTTTCTCTAGGAGGTTGTCTTCTTTAAGCAACATATTAAA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTAGGTTTTCTCTAGGAGGTTGTCTTCTTTAAGCAACATATTAAA  948

seq1  GCTCTTGAACAAGAGCCAGACACGTGGTACACACCTGTAATCCCAGCACT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTGAACAAGAGCCAGACACGTGGTACACACCTGTAATCCCAGCACT  998

seq1  TGGGAGGCAGAGGCACTCAGAGCTCTGAGCTTGAGGCCAGTCTGGTCTAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGGCAGAGGCACTCAGAGCTCTGAGCTTGAGGCCAGTCTGGTCTAA  1048

seq1  AGAGAGAATTC  1048
      |||||||||||
seq2  AGAGAGAATTC  1059

seq1: chr15_61868306_61869191
seq2: B6Ng01-302E13.g_68_953

seq1  GAATTCAGAACCCTCTTCACTCTCTAGCACAAGAAGGAGATAATCTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAACCCTCTTCACTCTCTAGCACAAGAAGGAGATAATCTGAAG  50

seq1  GAGATAATCGGAAGATCTGTTCGGTCACTCTCAGGGTGGAAACCAACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAATCGGAAGATCTGTTCGGTCACTCTCAGGGTGGAAACCAACCAC  100

seq1  ACACAGCGCGATTATCCGTGCATATCGCACTGGCACACACGAGTATGGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCGCGATTATCCGTGCATATCGCACTGGCACACACGAGTATGGTA  150

seq1  AATTTTCTCTTCAACAGAGACATCTTCATGTGGCTAAGAAGTAATGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTCTTCAACAGAGACATCTTCATGTGGCTAAGAAGTAATGAAAG  200

seq1  TGAAGACATTGAAGGGGGAACGTAGAGGGAGGGAGGAGATAAAGACTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACATTGAAGGGGGAACGTAGAGGGAGGGAGGAGATAAAGACTCTC  250

seq1  TGAGAGATTGAAATAAAGTGAGGTATAGTGTGCTGAGAGAAGAGTGGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGATTGAAATAAAGTGAGGTATAGTGTGCTGAGAGAAGAGTGGACC  300

seq1  CGCGTTACTTTCCGCGATCCTGGTATCACCTAGTTATGCAACCCGCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTACTTTCCGCGATCCTGGTATCACCTAGTTATGCAACCCGCTTTC  350

seq1  CACAGGACTCCGGTTTCCCTCTAGGATCTGAGTCTACCTCATCTTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGACTCCGGTTTCCCTCTAGGATCTGAGTCTACCTCATCTTTCATT  400

seq1  CCCCTTTCTGGTTGTAGCACGTTGCCGCGCTTGACTAAATGGTACTAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTCTGGTTGTAGCACGTTGCCGCGCTTGACTAAATGGTACTAGAG  450

seq1  ACGTGCACCTGTTCGGTGCTGGATTGAATACAGCGAAAAGAATATCGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCACCTGTTCGGTGCTGGATTGAATACAGCGAAAAGAATATCGTGG  500

seq1  TATACGCGTGCCTTTCACACCAGCCTTCGTTCTTTGCAGAGGCTTTTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACGCGTGCCTTTCACACCAGCCTTCGTTCTTTGCAGAGGCTTTTGCA  550

seq1  CATTTGAGAGGTTAGTGTAATACCCTGTACGGACCAAGAATGGAGGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAGAGGTTAGTGTAATACCCTGTACGGACCAAGAATGGAGGATGC  600

seq1  TGCAGACAGGTGGTCCTCTCTCAGCTAGAGTTTGCTTAGTACGTCCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACAGGTGGTCCTCTCTCAGCTAGAGTTTGCTTAGTACGTCCTTCT  650

seq1  CTCCAGAACCACAGATGATGGATGGTACCCAGGACTGCTCTCAGATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGAACCACAGATGATGGATGGTACCCAGGACTGCTCTCAGATGAGA  700

seq1  GTTCTGAAATAGAACAGATTCGGGGGGGTCTTCTGTAGGAACTACTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAAATAGAACAGATTCGGGGGGGTCTTCTGTAGGAACTACTGACC  750

seq1  TATTTTCTGAGCAGTTTGGTCCTTTTAATTCACTGGAGTCTCCTTCCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTGAGCAGTTTGGTCCTTTTAATTCACTGGAGTCTCCTTCCCTA  800

seq1  TCCGAAAAGTGGGAAGACTGCTAAGCTTCAAGGTGAAGGGGGATGGGATG  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCCGAAAAGT-GGAAGACTGCTAAGCTTCAAGGTGAAGGGGGATGGGATG  849

seq1  TCTACCTTAAAAAGGAATAGTGTGGGGG--AGGGGAGG  886
      |||||||| |||||||||||||||||||  ||||||||
seq2  TCTACCTT-AAAAGGAATAGTGTGGGGGGAAGGGGAGG  886