BAC Information

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BAC

Clone NameB6Ng01-303D03
Chromosome14 (Build37)15 (Build37)
Map Location 93,273,058 - 93,274,16315,496,771 - 15,497,848
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG665377, LOC638252
Downstream genePcdh9, LOC668566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-303D03.bB6Ng01-303D03.g
ACCGA097055GA097056
length1,1101,076
definitionB6Ng01-303D03.b B6Ng01-303D03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,273,058 - 93,274,163)(15,496,771 - 15,497,848)
sequence
gaattccagaagattaagacagggagatctccgagttcaggtcaactggg
attaaaggtatggtggcacacacctttaatctgggatacacctgctggag
acctacataaagacattggaagaaggaatacacacactctctctctcctt
tgcctgcttgctgtgtgggactgagtaactgctagatccttggacttgca
tttacaggtgctactgaccattgttgggagttggactgcagactataagt
catcaacaaattactttactatatagagactacccataagttctgtgact
ctagagaacccttactaatacagtagattcccaatagttctgtagttttt
gactagtgaaataacatggaagaaaaattttagatgctctggcagtggca
ttgataacatgtgaataggtagcttggtgtctaggaaagaagtctggaaa
ttgaatactggactctgatccatgaaggctttcttcttagggtagcatca
gtactccaagaggatcatataatttgctgtttggtgagaatcatagcctt
gtccagaatttacacaattggtgaaagaaagagaaaaaatactttgtcat
ctgttccccaaatgtagaagagaaggtgaaaatttccaagaggaatgaga
ctgatagggtagaaagggagaaagaggaagaagaggagggagagagggta
agagacagagagaggtactttctgtggtaagcgacaaagatagatcagac
gcaatgattgtcaaacatatgtttaagaatacttattatgttaaaaaagc
ttttttaggtttattgaattcatcaaggaaaacatcttaaaaatagtcgt
aatgagatgtgtagcagtctagagtatcttgtttctcagttcttcttttc
ttaagctcacaaggtatcactttcatgtttcttcctcccgcttttgttaa
cgttgcttttactgatttttccatctgcccagtaaaggaccctgggtcag
tccattgttgctacatttcaatagacgttttctggataatacgccaacat
ccatcacctacttccccagttgcaaccactgaatattgtgagtcagcttg
aaaaatataa

gaattcaataatatgggtttatggggaatgttttcacaaacctacccgtg
ggtaacctgatttcccttagattttttgattcaccttaaagcctgcaaaa
gaaatagaaggaataattattcttttaaaaatatgaagtgcttttttttt
aactgctctgggtgtggttacatttataaattactcataaagtgtgaaga
ttcctctttcttctctttcagatacaggacttggtctgggcacacttcct
taggcatggatgactttattatttttcctttgaagtttgatctccaatca
attcattgctgttatccatgcctagtggaaggcatcttttctttctttct
ttcctcaatgttttaacaaatctgctgatactgaaagtttgcttaacctc
aggtttttcttttaaatcctaactaaaaatttcctctagtttcttcccaa
aattctttcattaatgtgagcatgaatcactgaggagatcataaattctg
atacacagtagctgccccacattgaggataacattttgttctatgcctaa
gtacaaaagatgtaatgcaccttaccaaatgccatatgttttatttaata
agaagaaattaattaagagaaataattaaacatttttgcatatttctgtt
attgtttctaatatgtcagtttatatatccttttaaatttaaaaatacat
ttagctttataaaaatatttattactccttaagttatactcttttaaaaa
taatctctcacaaaccaatacattgaatatactgttttctgcacctcctg
tctctctgcctctaattctctttgtttctcttaaattgtttcactatacc
tttcgattttttctggtttgtgttataccaatgtaagaaatgtgttcagt
tttctctatgttttataaactttgcttccctctgactctcacacagactt
tcttttctgtggtatgatcaagggactgattatatatggagtggtgggcc
tattaaaagtctgggaggcatcacctcttagtgacagtgttgaactctga
gaccacctctgataacaatcaagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_93273058_93274163
seq2: B6Ng01-303D03.b_45_1154

seq1  GAATTCCAGAAGATTAAGACAGGGAGATCTCCGAGTTCAGGTCAACTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAAGATTAAGACAGGGAGATCTCCGAGTTCAGGTCAACTGGG  50

seq1  ATTAAAGGTATGGTGGCACACACCTTTAATCTGGGATACACCTGCTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTATGGTGGCACACACCTTTAATCTGGGATACACCTGCTGGAG  100

seq1  ACCTACATAAAGACATTGGAAGAAGGAATACACACACTCTCTCTCTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATAAAGACATTGGAAGAAGGAATACACACACTCTCTCTCTCCTT  150

seq1  TGCCTGCTTGCTGTGTGGGACTGAGTAACTGCTAGATCCTTGGACTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTTGCTGTGTGGGACTGAGTAACTGCTAGATCCTTGGACTTGCA  200

seq1  TTTACAGGTGCTACTGACCATTGTTGGGAGTTGGACTGCAGACTATAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTGCTACTGACCATTGTTGGGAGTTGGACTGCAGACTATAAGT  250

seq1  CATCAACAAATTACTTTACTATATAGAGACTACCCATAAGTTCTGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAACAAATTACTTTACTATATAGAGACTACCCATAAGTTCTGTGACT  300

seq1  CTAGAGAACCCTTACTAATACAGTAGATTCCCAATAGTTCTGTAGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAACCCTTACTAATACAGTAGATTCCCAATAGTTCTGTAGTTTTT  350

seq1  GACTAGTGAAATAACATGGAAGAAAAATTTTAGATGCTCTGGCAGTGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTGAAATAACATGGAAGAAAAATTTTAGATGCTCTGGCAGTGGCA  400

seq1  TTGATAACATGTGAATAGGTAGCTTGGTGTCTAGGAAAGAAGTCTGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAACATGTGAATAGGTAGCTTGGTGTCTAGGAAAGAAGTCTGGAAA  450

seq1  TTGAATACTGGACTCTGATCCATGAAGGCTTTCTTCTTAGGGTAGCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACTGGACTCTGATCCATGAAGGCTTTCTTCTTAGGGTAGCATCA  500

seq1  GTACTCCAAGAGGATCATATAATTTGCTGTTTGGTGAGAATCATAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCAAGAGGATCATATAATTTGCTGTTTGGTGAGAATCATAGCCTT  550

seq1  GTCCAGAATTTACACAATTGGTGAAAGAAAGAGAAAAAATACTTTGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAATTTACACAATTGGTGAAAGAAAGAGAAAAAATACTTTGTCAT  600

seq1  CTGTTCCCCAAATGTAGAAGAGAAGGTGAAAATTTCCAAGAGGAATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCCCAAATGTAGAAGAGAAGGTGAAAATTTCCAAGAGGAATGAGA  650

seq1  CTGATAGGGTAGAAAGGGAGAAAGAGGAAGAAGAGGAGGGAGAGAGGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAGGGTAGAAAGGGAGAAAGAGGAAGAAGAGGAGGGAGAGAGGGTA  700

seq1  AGAGACAGAGAGAGGTACTTTCTGTGGTAAGCGACAAAGATAGATCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGAGAGGTACTTTCTGTGGTAAGCGACAAAGATAGATCAGAC  750

seq1  GCAATGATTGTCAAACATATGTTTAAGAATACTTATTATGTTAAAAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGATTGTCAAACATATGTTTAAGAATACTTATTATGTTAAAAAAGC  800

seq1  TTTTTTAGGTTTATTGAATTCATCAAGGAAAACATCTTAAAAATAGTCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGGTTTATTGAATTCATCAAGGAAAACATCTTAAAAATAGTCGT  850

seq1  AATGAGATGTGTAGCAGTCTAGAGTATCTTGTTTCTCAGTTCTTCTTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGATGTGTAGCAGTCTAGAGTATCTTGTTTCTCAGTTCTTCTTTTC  900

seq1  TTAAGCTCACAAGGTATCACTTTCATGTTTCTTCCTCCCGCTTTTGTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTCACAAGGTATCACTTTCATGTTTCTTCCTCCCGCTTTTGTTAA  950

seq1  CGTTGCTTTTACTGATTTTTCCATCTGCCCAGTAAAGGACCCT-GGTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGTTGCTTTTACTGATTTTTCCATCTGCCCAGTAAAGGACCCTGGGTCAG  1000

seq1  TCCATTGTTGCTACA-TTCAATAGACG-TTTCTGGATAATACGCCAACAT  1047
      ||||||||||||||| ||||||||||| ||||||||||||||||||||||
seq2  TCCATTGTTGCTACATTTCAATAGACGTTTTCTGGATAATACGCCAACAT  1050

seq1  CCATCACCTAC-TCCCCAGTTGC-ACCACTG-ATA-TGTGAGTCAGGCTT  1093
      ||||||||||| ||||||||||| ||||||| ||| ||||||||||   |
seq2  CCATCACCTACTTCCCCAGTTGCAACCACTGAATATTGTGAGTCAG--CT  1098

seq1  TGAAAATATATAA  1106
      |||||| ||||||
seq2  TGAAAA-ATATAA  1110


seq1: chr15_15496771_15497848
seq2: B6Ng01-303D03.g_66_1141 (reverse)

seq1  GTTCTTGATTGTTATCAGAGGTGGTCCTCAGAGTTCAACACTGTCACTAA  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTTCTTGATTGTTATCAGAGGTGGT-CTCAGAGTTCAACACTGTCACTAA  49

seq1  GAGGTTGATGGCCTCCAGACTTTTTAATAGGCCAACCACT-CATATATAA  99
      |||| ||||| |  |||||| |||||||||||| |||||| |||||||||
seq2  GAGG-TGATGCCTCCCAGAC-TTTTAATAGGCCCACCACTCCATATATAA  97

seq1  TCAGTCCCTTGATCATACCACAGAAAAGAAAGTCTGTGTTGAGAGTCAGA  149
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCAGTCCCTTGATCATACCACAGAAAAGAAAGTCTGTG-TGAGAGTCAGA  146

seq1  GGGAAGCAAAGTTTATAAAACATAGAGAAAACTGAACACATTTCTTACAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCAAAGTTTATAAAACATAGAGAAAACTGAACACATTTCTTACAT  196

seq1  TGGTATAACACAAA-CAGAAAAAATCGAAAGGTATAGTGAAACAATTTAA  248
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGGTATAACACAAACCAGAAAAAATCGAAAGGTATAGTGAAACAATTTAA  246

seq1  GAGAAACAAAGAGAATTAGAGGCAGAGAGACAGGAGGTGCAGAAAACAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAAAGAGAATTAGAGGCAGAGAGACAGGAGGTGCAGAAAACAGT  296

seq1  ATATTCAATGTATTGGTTTGTGAGAGATTATTTTTAAAAGAGTATAACTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAATGTATTGGTTTGTGAGAGATTATTTTTAAAAGAGTATAACTT  346

seq1  AAGGAGTAATAAATATTTTTATAAAGCTAAATGTATTTTTAAATTTAAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTAATAAATATTTTTATAAAGCTAAATGTATTTTTAAATTTAAAA  396

seq1  GGATATATAAACTGACATATTAGAAACAATAACAGAAATATGCAAAAATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATAAACTGACATATTAGAAACAATAACAGAAATATGCAAAAATG  446

seq1  TTTAATTATTTCTCTTAATTAATTTCTTCTTATTAAATAAAACATATGGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTATTTCTCTTAATTAATTTCTTCTTATTAAATAAAACATATGGC  496

seq1  ATTTGGTAAGGTGCATTACATCTTTTGTACTTAGGCATAGAACAAAATGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGTAAGGTGCATTACATCTTTTGTACTTAGGCATAGAACAAAATGT  546

seq1  TATCCTCAATGTGGGGCAGCTACTGTGTATCAGAATTTATGATCTCCTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCAATGTGGGGCAGCTACTGTGTATCAGAATTTATGATCTCCTCA  596

seq1  GTGATTCATGCTCACATTAATGAAAGAATTTTGGGAAGAAACTAGAGGAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTCATGCTCACATTAATGAAAGAATTTTGGGAAGAAACTAGAGGAA  646

seq1  ATTTTTAGTTAGGATTTAAAAGAAAAACCTGAGGTTAAGCAAACTTTCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAGTTAGGATTTAAAAGAAAAACCTGAGGTTAAGCAAACTTTCAG  696

seq1  TATCAGCAGATTTGTTAAAACATTGAGGAAAGAAAGAAAGAAAAGATGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCAGATTTGTTAAAACATTGAGGAAAGAAAGAAAGAAAAGATGCC  746

seq1  TTCCACTAGGCATGGATAACAGCAATGAATTGATTGGAGATCAAACTTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTAGGCATGGATAACAGCAATGAATTGATTGGAGATCAAACTTCA  796

seq1  AAGGAAAAATAATAAAGTCATCCATGCCTAAGGAAGTGTGCCCAGACCAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAATAATAAAGTCATCCATGCCTAAGGAAGTGTGCCCAGACCAA  846

seq1  GTCCTGTATCTGAAAGAGAAGAAAGAGGAATCTTCACACTTTATGAGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTATCTGAAAGAGAAGAAAGAGGAATCTTCACACTTTATGAGTAA  896

seq1  TTTATAAATGTAACCACACCCAGAGCAGTTAAAAAAAAAGCACTTCATAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAATGTAACCACACCCAGAGCAGTTAAAAAAAAAGCACTTCATAT  946

seq1  TTTTAAAAGAATAATTATTCCTTCTATTTCTTTTGCAGGCTTTAAGGTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGAATAATTATTCCTTCTATTTCTTTTGCAGGCTTTAAGGTGA  996

seq1  ATCAAAAAATCTAAGGGAAATCAGGTTACCCACGGGTAGGTTTGTGAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAAAATCTAAGGGAAATCAGGTTACCCACGGGTAGGTTTGTGAAAA  1046

seq1  CATTCCCCATAAACCCATATTATTGAATTC  1078
      ||||||||||||||||||||||||||||||
seq2  CATTCCCCATAAACCCATATTATTGAATTC  1076


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