BAC Information

Click to search

BAC

Clone NameB6Ng01-304F24
Chromosome15 (Build37)
Map Location 88,246,602 - 88,451,800
singlet/doubletdoublet
Overlap geneZdhhc25
Upstream geneAW049604, LOC100042329, LOC100042340
Downstream geneBrd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-304F24.bB6Ng01-304F24.g
ACCGA097948GA097949
length9661,037
definitionB6Ng01-304F24.b B6Ng01-304F24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,450,856 - 88,451,800)(88,246,602 - 88,247,635)
sequence
gggaattcatcatatccttcatattccagcagtttctgtacttgaaccaa
ctaaagtttggaaaatttggaacaacccccccccaaaaaaacctgatcac
accccattaattaatcaatttgttcattcatgccatgtacctggagtttc
tttctttcttttttttttaagagttatttatttattttatgtatatgagt
acatactgtagctgtacagatagttttgagccttcatctggttgttggga
attgaatttaggacctcactgtagctgtcttcagacacaccagaagagca
gaagagagtgtcagatctcattaagggtggttatgagccaccatgtggct
gggatttgaactcaggacttacggaagagcagtcttacccactgagccat
ctctccagccctggagttttgtttttttttttttccattttttattaggt
atttcactcatttacatttgcaatgctataccaaaagtcccccatagcca
cccaccccctctcccctacccacccactccccttttatggccctggcgtt
cccctgtactggggcatataaagtttgcgtgtccaatgggcctctctttc
cagtgatggccgactaggccatcttttgatgcatatgcagctagagtcaa
gagctccggggtactggttagttcataatgttgttccaccctatagggtt
gcagatccctttagcttcttggttactttctctagctcccttcattgggg
ggccatggtgatccatcccaatagctgggagtttcctttcttgccccttt
aagctcactggtagatgggactcctgttcttagggaccccatgtgctgga
ataaaaatgaagtgtgctttgtcctcaaaaatcaagaaggggtcccgggg
gcttctatgactcacacaaggagtccatattgccacgaactccagtggct
tgctcctgggttccta
gaattcagtgtggtaagatatagctataatctcagcacttaggagaggtg
gaaggagttttgcaacaaggcaggctgagctatagtatgagactatgtct
cattaaaaagacaagtgggactgtgggaacaggaatgaacatccctacag
gtaatatggcccctcacagtaggtcaagactgacaagagtcagaacactc
tacagtaaacgaggctttggtaaataccctgagcatcctcagaggggtct
caggcagacagaatcctagacattcttgggcaagacacagggagggatcc
gcttggctgctgtcagtggaatacaaagcttcagcttaaaggcagaagca
ccttgaaatttggattttaaaatccatatagcacaggaaacttattgtcc
acttcctgggtcctataagcacacacacgtgcatgtgtgcacacacacac
atatgcgcacaccccaaatactttgtcacacagacttgtgtttggtgtgt
tcagtatctagggaggatgtgggtccattgtagccagctagtgctgaggg
cagtaagagaaacaaagatgtgtaaggtagtccctccaatcctctaggac
ttgaggccaacagagaaggattcagtctggacacacagttctcaaaggcc
agacccagggccatgatagtgtggtacagaaagaaaaggaatgcattaat
agagcagccaagattcctgcccatgcctcagttagcaaagccttttgatt
cacacaatgaggctagccacatgttggtgcaaacatgtccacacgtccac
acagggatacaaacacacacacacacacactaaattgtccagaaagaggc
tagagagtacctcctatcaggggaccttgatctccacccagcgccacctg
acaggaattgcaagctggcaccacccacttaaaggacgacctttctttgt
tttctggaatcttgtgggcagaatagagaacacaggaaaaccaactcttg
aaaaggataaatgtgtatagctctagaggaggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_88450856_88451800
seq2: B6Ng01-304F24.b_50_1013 (reverse)

seq1  TAGGAACCCAGGA-CATGCC-CTGGAG-TCCTGGC-ATCT-GACTCCTTG  45
      ||||||||||||| || ||| |||||| || |||| || | |||||||||
seq2  TAGGAACCCAGGAGCAAGCCACTGGAGTTCGTGGCAATATGGACTCCTTG  50

seq1  TGTGAGTCTGTGAAGCCCCCGG--ACCCATCATGATTCTAGAGGACAAAG  93
      ||||||||   |||||||||||   ||| || ||||| | ||||||||||
seq2  TGTGAGTCATAGAAGCCCCCGGGACCCCTTCTTGATTTTTGAGGACAAAG  100

seq1  CACAC-TCATTTCTA-TCCAGCACAT-GGGTCCCTAAGAACA-GAGTCCC  139
      ||||| |||||| || |||||||||| ||||||||||||||| |||||||
seq2  CACACTTCATTTTTATTCCAGCACATGGGGTCCCTAAGAACAGGAGTCCC  150

seq1  ATCTACCAGTGAGCTTAAA-GGGCAAGAAA-GAAACT-CCAGCTATT-GG  185
      ||||||||||||||||||| |||||||||| |||||| ||||||||| ||
seq2  ATCTACCAGTGAGCTTAAAGGGGCAAGAAAGGAAACTCCCAGCTATTGGG  200

seq1  ATGGATCA-CATGG-CCCCCAATGAA-GGAGCTAGAGAAAGTAACCAAGA  232
      |||||||| ||||| ||||||||||| |||||||||||||||||||||||
seq2  ATGGATCACCATGGCCCCCCAATGAAGGGAGCTAGAGAAAGTAACCAAGA  250

seq1  AGCTAAAGGGATCTGCAACCCTATA-GGTGGAACAACATTATGAACTAAC  281
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCTAAAGGGATCTGCAACCCTATAGGGTGGAACAACATTATGAACTAAC  300

seq1  CAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGCATCAAAAGATGGCC  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGCATCAAAAGATGGCC  350

seq1  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATA  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAACTTTATA  400

seq1  TGCCCCAGTACAGGGGAACGCCAGGGCCATAAAAGGGGAGTGGGTGGGTA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCAGTACAGGGGAACGCCAGGGCCATAAAAGGGGAGTGGGTGGGTA  450

seq1  GGGGAGAGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATTGCAAA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAGGGGGTGGGTGGCTATGGGGGACTTTTGGTATAGCATTGCAAA  500

seq1  TGTAAATGAGTGAAATACCTAATAAAAAATGGAAAAAAAAAAAAACAAAA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATGAGTGAAATACCTAATAAAAAATGGAAAAAAAAAAAAACAAAA  550

seq1  CTCCAGGGCTGGAGAGATGGCTCAGTGGGTAAGACTGCTCTTCCGTAAGT  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGGCTGGAGAGATGGCTCAGTGGGTAAGACTGCTCTTCCGTAAGT  600

seq1  CCTGAGTTCAAATCCCAGCCACATGGTGGCTCATAACCACCCTTAATGAG  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTCAAATCCCAGCCACATGGTGGCTCATAACCACCCTTAATGAG  650

seq1  ATCTGACACTCTCTTCTGCTCTTCTGGTGTGTCTGAAGACAGCTACAGTG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACACTCTCTTCTGCTCTTCTGGTGTGTCTGAAGACAGCTACAGTG  700

seq1  AGGTCCTAAATTCAATTCCCAACAACCAGATGAAGGCTCAAAACTATCTG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCTAAATTCAATTCCCAACAACCAGATGAAGGCTCAAAACTATCTG  750

seq1  TACAGCTACAGTATGTACTCATATACATAAAATAAATAAATAACTCTTAA  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTACAGTATGTACTCATATACATAAAATAAATAAATAACTCTTAA  800

seq1  AAAAAAAAGAAAGAAAGAAACTCCAGGTACATGGCATGAATGAACAAATT  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGAAAGAAAGAAACTCCAGGTACATGGCATGAATGAACAAATT  850

seq1  GATTAATTAATGGGGTGTGATCAGGTTTTTTTGGGGGGGGGTTGTTCCAA  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAATTAATGGGGTGTGATCAGGTTTTTTTGGGGGGGGGTTGTTCCAA  900

seq1  ATTTTCCAAACTTTAGTTGGTTCAAGTACAGAAACTGCTGGAATATGAAG  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCAAACTTTAGTTGGTTCAAGTACAGAAACTGCTGGAATATGAAG  950

seq1  GATATGATGAATTC  945
      ||||||||||||||
seq2  GATATGATGAATTC  964

seq1: chr15_88246602_88247635
seq2: B6Ng01-304F24.g_73_1109

seq1  GAATTCAGTGTGGTAAGATATAGCTATAATCTCAGCACTTAGGAGAGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGTGGTAAGATATAGCTATAATCTCAGCACTTAGGAGAGGTG  50

seq1  GAAGGAGTTTTGCAACAAGGCAGGCTGAGCTATAGTATGAGACTATGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTTTGCAACAAGGCAGGCTGAGCTATAGTATGAGACTATGTCT  100

seq1  CATTAAAAAGACAAGTGGGACTGTGGGAACAGGAATGAACATCCCTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAAAGACAAGTGGGACTGTGGGAACAGGAATGAACATCCCTACAG  150

seq1  GTAATATGGCCCCTCACAGTAGGTCAAGACTGACAAGAGTCAGAACACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATGGCCCCTCACAGTAGGTCAAGACTGACAAGAGTCAGAACACTC  200

seq1  TACAGTAAACGAGGCTTTGGTAAATACCCTGAGCATCCTCAGAGGGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAACGAGGCTTTGGTAAATACCCTGAGCATCCTCAGAGGGGTCT  250

seq1  CAGGCAGACAGAATCCTAGACATTCTTGGGCAAGACACAGGGAGGGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACAGAATCCTAGACATTCTTGGGCAAGACACAGGGAGGGATCC  300

seq1  GCTTGGCTGCTGTCAGTGGAATACAAAGCTTCAGCTTAAAGGCAGAAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGCTGCTGTCAGTGGAATACAAAGCTTCAGCTTAAAGGCAGAAGCA  350

seq1  CCTTGAAATTTGGATTTTAAAATCCATATAGCACAGGAAACTTATTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAAATTTGGATTTTAAAATCCATATAGCACAGGAAACTTATTGTCC  400

seq1  ACTTCCTGGGTCCTATAAGCACACACACGTGCATGTGTGCACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGGGTCCTATAAGCACACACACGTGCATGTGTGCACACACACAC  450

seq1  ATATGCGCACACCCCAAATACTTTGTCACACAGACTTGTGTTTGGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCGCACACCCCAAATACTTTGTCACACAGACTTGTGTTTGGTGTGT  500

seq1  TCAGTATCTAGGGAGGATGTGGGTCCATTGTAGCCAGCTAGTGCTGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATCTAGGGAGGATGTGGGTCCATTGTAGCCAGCTAGTGCTGAGGG  550

seq1  CAGTAAGAGAAACAAAGATGTGTAAGGTAGTCCCTCCAATCCTCTAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAGAAACAAAGATGTGTAAGGTAGTCCCTCCAATCCTCTAGGAC  600

seq1  TTGAGGCCAACAGAGAAGGATTCAGTCTGGACACACAGTTCTCAAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCCAACAGAGAAGGATTCAGTCTGGACACACAGTTCTCAAAGGCC  650

seq1  AGACCCAGGGCCATGATAGTGTGGTACAGAAAGAAAAGGAATGCATTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCAGGGCCATGATAGTGTGGTACAGAAAGAAAAGGAATGCATTAAT  700

seq1  AGAGCAGCCAAGATTCCTGCCCATGCCTCAGTTAGCAAAGCCTTTTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCCAAGATTCCTGCCCATGCCTCAGTTAGCAAAGCCTTTTGATT  750

seq1  CACACAATGAGGCTAGCCACATGTTGGTGCAAACATGTCCACACGTCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATGAGGCTAGCCACATGTTGGTGCAAACATGTCCACACGTCCAC  800

seq1  ACAGGGATACAAACACACACACACACACACTAAATTGTCCAGAAAGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATACAAACACACACACACACACACTAAATTGTCCAGAAAGAGGC  850

seq1  TAGAGAGTACCT-CTATCAAGGGGACCTTGATCTCCACCCAGCGCCACCT  899
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TAGAGAGTACCTCCTATC-AGGGGACCTTGATCTCCACCCAGCGCCACCT  899

seq1  GACAGGAA-TGCAAGCTGGCACCAACCCACTT-AAGGACGACCTTCCTTT  947
      |||||||| |||||||||||||| |||||||| |||||||||||| ||||
seq2  GACAGGAATTGCAAGCTGGCACC-ACCCACTTAAAGGACGACCTTTCTTT  948

seq1  TGTTTCTGGATTCTTGTGGGGCAGAAAAGAGGACACAGGAGAA-CAACTC  996
        |||||||| |||||| |||||||| |||| |||||||| || ||||||
seq2  GTTTTCTGGAATCTTGT-GGGCAGAATAGAGAACACAGGAAAACCAACTC  997

seq1  -TGAAAAGGAAAAATGTGTAAAGCTCAAGA-GAGGGGAAA  1034
       ||||||||| ||||||||| ||||| ||| |||||||||
seq2  TTGAAAAGGATAAATGTGTATAGCTCTAGAGGAGGGGAAA  1037