BAC Information

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BAC

Clone NameB6Ng01-305J18
Chromosome15 (Build37)
Map Location 78,972,455 - 79,118,037
singlet/doubletdoublet
Overlap genePolr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6
Upstream geneRabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik
Downstream geneMaff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305J18.bB6Ng01-305J18.g
ACCGA098858GA098859
length8531,085
definitionB6Ng01-305J18.b B6Ng01-305J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,972,455 - 78,973,305)(79,116,952 - 79,118,037)
sequence
gaattcacccacctctgcctccccaagtgctgggattaaaggcgtgcgcc
accaccacccggctggacatatttttattttatttatttggagaccaaat
ataaccttatatcaggtggttcgaacatagagattcatctacctctgctt
tccaggtgatttttgttcttttttttttttttttttcctgagacagagtc
tttcaacatagtcctagctgtgtctggaagtcactgtgtagatttggctg
tcctcaaacttacagagatctgcctgctttcacctcctgagcactggatt
acaggcgtgcgccaccatgcctggatcctgatatattttaaagatagaac
ctaaaggatttcttgatacgctgtatatgttaatcaagagagaagatgaa
ctatggtagtcctgatagatcagtcagaattcagagtctgggcgtggtgg
ttcacacctgtaatcctagcacttgggaggctactgcaggggaattgtcc
tgaactagatgtcaacatagtgagtctcaggccagcctgagttacatact
gtgcagtaagattgacttcaaaacaagcatacaaaatacagtcaaaaatg
caatgaaagcagagatgacggcgttgaccagggcagtgattgccaccaga
gaagagatggtgagtgagtgacttggggggaagagaacccagaaaagcat
cccctcccccagagtgggaggcaggagggaggagccaggtatgctggctg
tccaggggaagggttcagcattgtaaagatccttagtgaagctggggggt
ggtgcaagcctttgattccagcactcatgggcagagacttgggggggggg
ggg
gaattcttccccggggcctccactactggccaaggtcccccccacactgc
catgtatacccctgtcagccagctttgggagacagtccagcctcggtctc
tgggctgacagatcctacagtggaaccccagtgcgggtttctagtattct
ttgaccacagattccttactgcatgcagctatataaaaggccagaatgca
aatggacaaaatctagaagagggagggaggggcagcctctgtcacagccc
taactcagctactcagtgatcctagatggactctgcacagctagtccagc
cactggggcccagagagggggacttacacaaagtcactctgctaatgaat
gcctaggacccagagcccagagggtgggtagtagggcattgtagcctggt
cttactgagactgcttcccaccagtgcacagatccagatgggcgggctgt
ggatcgggcccgggcctggtgcgagatggtcggcatccagtacttcaggt
gaggttcagggctcgcctgactctacccaggtgagacccaccaaccctca
tgtcaccgacagaggtccgtgccccaccatgacccaatgagactcagaga
cacacacctgccagccattgatgtggtcttccgttccccagcccaaactc
ctgttcacatccaggctggtgtggctaattctgggtgaccctctgctcct
ttctcccaacagactgaacccccagctagggtccgacatcatgctggacg
aggtcagtgatgcagtgctggtcaacgccctctgggagaccgaggtctac
atctatgagcaccgagaggagttccagaagcttgtccagctgctgctgtc
tccctgagctcccggggcctgccagcacactgagggcccaagctgggcct
ggcagctccatgtccatctgacactagggactcagagcacaaaccgggtt
tccacgaggcacctcctcctggtccatctgcactttactactcgaggctg
aaagcccagagtttcccctcagcccctttccctgactatgaagacaactg
actcatcaggaccacatatcagagatcacactacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_78972455_78973305
seq2: B6Ng01-305J18.b_44_896

seq1  GAATTCACCCACCTCTGCCTCCCCAAGTGCTGGGATTAAAGGCGTGCGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCACCTCTGCCTCCCCAAGTGCTGGGATTAAAGGCGTGCGCC  50

seq1  ACCACCACCCGGCTGGACATATTTTTATTTTATTTATTTGGAGACCAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCCGGCTGGACATATTTTTATTTTATTTATTTGGAGACCAAAT  100

seq1  ATAACCTTATATCAGGTGGTTCGAACATAGAGATTCATCTACCTCTGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTATATCAGGTGGTTCGAACATAGAGATTCATCTACCTCTGCTT  150

seq1  TCCAGGTGATTTTTGTTCTTTTTTTTTTTTTTTTTTCCTGAGACAGAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTGATTTTTGTTCTTTTTTTTTTTTTTTTTTCCTGAGACAGAGTC  200

seq1  TTTCAACATAGTCCTAGCTGTGTCTGGAAGTCACTGTGTAGATTTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACATAGTCCTAGCTGTGTCTGGAAGTCACTGTGTAGATTTGGCTG  250

seq1  TCCTCAAACTTACAGAGATCTGCCTGCTTTCACCTCCTGAGCACTGGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAACTTACAGAGATCTGCCTGCTTTCACCTCCTGAGCACTGGATT  300

seq1  ACAGGCGTGCGCCACCATGCCTGGATCCTGATATATTTTAAAGATAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCGTGCGCCACCATGCCTGGATCCTGATATATTTTAAAGATAGAAC  350

seq1  CTAAAGGATTTCTTGATACGCTGTATATGTTAATCAAGAGAGAAGATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGGATTTCTTGATACGCTGTATATGTTAATCAAGAGAGAAGATGAA  400

seq1  CTATGGTAGTCCTGATAGATCAGTCAGAATTCAGAGTCTGGGCGTGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGTAGTCCTGATAGATCAGTCAGAATTCAGAGTCTGGGCGTGGTGG  450

seq1  TTCACACCTGTAATCCTAGCACTTGGGAGGCTACTGCAGGGGAATTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCTGTAATCCTAGCACTTGGGAGGCTACTGCAGGGGAATTGTCC  500

seq1  TGAACTAGATGTCAACATAGTGAGTCTCAGGCCAGCCTGAGTTACATACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAGATGTCAACATAGTGAGTCTCAGGCCAGCCTGAGTTACATACT  550

seq1  GTGCAGTAAGATTGACTTCAAAACAAGCATACAAAATACAGTCAAAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGTAAGATTGACTTCAAAACAAGCATACAAAATACAGTCAAAAATG  600

seq1  CAATGAAAGCAGAGATGACGGCGTTGACCAGGGCAGTGATTGCCACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAGCAGAGATGACGGCGTTGACCAGGGCAGTGATTGCCACCAGA  650

seq1  GAAGAGATGGTGAGTGAGTGACTTGGGGGGAAGAGAACCCAGAAAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGATGGTGAGTGAGTGACTTGGGGGGAAGAGAACCCAGAAAAGCAT  700

seq1  CCCCTCCCCCAGAGTGGGAGGCAGGAGGGAGGAGCCAGGTATGCTGGCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCCCCAGAGTGGGAGGCAGGAGGGAGGAGCCAGGTATGCTGGCTG  750

seq1  TCCAGGGGAAGGGTTCAGCATTGTAAAGATCCTTAGTGAAGCT-GGGGGT  799
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TCCAGGGGAAGGGTTCAGCATTGTAAAGATCCTTAGTGAAGCTGGGGGGT  800

seq1  GGTGCAAGCCTTTGATTCCAGCACTCA-GGGCAGAGACTTGGGGGGGGGG  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTGCAAGCCTTTGATTCCAGCACTCATGGGCAGAGACTTGGGGGGGGGG  850

seq1  GGG  851
      |||
seq2  GGG  853

seq1: chr15_79116952_79118037
seq2: B6Ng01-305J18.g_69_1153 (reverse)

seq1  CGTAGTGTTGATCTCTGATATGTGGGGTCCTTGATGGAGTCAGTTGTCCT  50
      ||||||| |||||||||||||||  ||||| |||| ||||||||||| ||
seq2  CGTAGTG-TGATCTCTGATATGT--GGTCC-TGAT-GAGTCAGTTGT-CT  44

seq1  TCATAGTCAGGGAAAGGGGCTGAGGGG-AACTCTGGGCTTTCAGCCTCGA  99
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCATAGTCAGGGAAAGGGGCTGAGGGGAAACTCTGGGCTTTCAGCCTCGA  94

seq1  GTAGTAAAGTGCAGATGGACCAGGA-GAGGTGCCTCGTGGGAA-CCGGTT  147
      ||||||||||||||||||||||||| |||||||||||||| || ||||||
seq2  GTAGTAAAGTGCAGATGGACCAGGAGGAGGTGCCTCGTGGAAACCCGGTT  144

seq1  TGTGCTCTGAGT-CCTAGTGTCAGATGGACATGGAGCTGCCAGGCCCAGC  196
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCTGAGTCCCTAGTGTCAGATGGACATGGAGCTGCCAGGCCCAGC  194

seq1  TT-GGCCCTCAGTGTGCTGGCAGGCCCCGGGAGCTCAGGGAGACAGCAGC  245
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCCTCAGTGTGCTGGCAGGCCCCGGGAGCTCAGGGAGACAGCAGC  244

seq1  AGCTGGACAAGCTTCTGGAACTCCTCTCGGTGCTCATAGATGTAGACCTC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGACAAGCTTCTGGAACTCCTCTCGGTGCTCATAGATGTAGACCTC  294

seq1  GGTCTCCCAGAGGGCGTTGACCAGCACTGCATCACTGACCTCGTCCAGCA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCCCAGAGGGCGTTGACCAGCACTGCATCACTGACCTCGTCCAGCA  344

seq1  TGATGTCGGACCCTAGCTGGGGGTTCAGTCTGTTGGGAGAAAGGAGCAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTCGGACCCTAGCTGGGGGTTCAGTCTGTTGGGAGAAAGGAGCAGA  394

seq1  GGGTCACCCAGAATTAGCCACACCAGCCTGGATGTGAACAGGAGTTTGGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCACCCAGAATTAGCCACACCAGCCTGGATGTGAACAGGAGTTTGGG  444

seq1  CTGGGGAACGGAAGACCACATCAATGGCTGGCAGGTGTGTGTCTCTGAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAACGGAAGACCACATCAATGGCTGGCAGGTGTGTGTCTCTGAGT  494

seq1  CTCATTGGGTCATGGTGGGGCACGGACCTCTGTCGGTGACATGAGGGTTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGGGTCATGGTGGGGCACGGACCTCTGTCGGTGACATGAGGGTTG  544

seq1  GTGGGTCTCACCTGGGTAGAGTCAGGCGAGCCCTGAACCTCACCTGAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTCTCACCTGGGTAGAGTCAGGCGAGCCCTGAACCTCACCTGAAGT  594

seq1  ACTGGATGCCGACCATCTCGCACCAGGCCCGGGCCCGATCCACAGCCCGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATGCCGACCATCTCGCACCAGGCCCGGGCCCGATCCACAGCCCGC  644

seq1  CCATCTGGATCTGTGCACTGGTGGGAAGCAGTCTCAGTAAGACCAGGCTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGATCTGTGCACTGGTGGGAAGCAGTCTCAGTAAGACCAGGCTA  694

seq1  CAATGCCCTACTACCCACCCTCTGGGCTCTGGGTCCTAGGCATTCATTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCCCTACTACCCACCCTCTGGGCTCTGGGTCCTAGGCATTCATTAG  744

seq1  CAGAGTGACTTTGTGTAAGTCCCCCTCTCTGGGCCCCAGTGGCTGGACTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGACTTTGTGTAAGTCCCCCTCTCTGGGCCCCAGTGGCTGGACTA  794

seq1  GCTGTGCAGAGTCCATCTAGGATCACTGAGTAGCTGAGTTAGGGCTGTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCAGAGTCCATCTAGGATCACTGAGTAGCTGAGTTAGGGCTGTGA  844

seq1  CAGAGGCTGCCCCTCCCTCCCTCTTCTAGATTTTGTCCATTTGCATTCTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCTGCCCCTCCCTCCCTCTTCTAGATTTTGTCCATTTGCATTCTG  894

seq1  GCCTTTTATATAGCTGCATGCAGTAAGGAATCTGTGGTCAAAGAATACTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTATATAGCTGCATGCAGTAAGGAATCTGTGGTCAAAGAATACTA  944

seq1  GAAACCCGCACTGGGGTTCCACTGTAGGATCTGTCAGCCCAGAGACCGAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCGCACTGGGGTTCCACTGTAGGATCTGTCAGCCCAGAGACCGAG  994

seq1  GCTGGACTGTCTCCCAAAGCTGGCTGACAGGGGTATACATGGCAGTGTGG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGACTGTCTCCCAAAGCTGGCTGACAGGGGTATACATGGCAGTGTGG  1044

seq1  GGGGGACCTTGGCCAGTAGTGGAGGCCCCGGGGAAGAATTC  1086
      |||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACCTTGGCCAGTAGTGGAGGCCCCGGGGAAGAATTC  1085