BAC Information

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BAC

Clone NameB6Ng01-307B17
Chromosome15 (Build37)
Map Location 30,548,683 - 30,549,828
singlet/doubletsinglet
Overlap geneCtnnd2
Upstream geneLOC382975
Downstream gene9630009A06Rik, Dap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307B17.bB6Ng01-307B17.g
ACCGA099966GA099967
length1,2001,145
definitionB6Ng01-307B17.b B6Ng01-307B17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaggaacccagat
gctcctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagccattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccaa
atggaggagctagagaaagtacccaaggagctaaagggatcttcaaccct
ataggtggaacaacattatgaaccacccagtacccctgagctcttgactc
tagctgcatatgtatcaaaagatgggcctagtcgtcatcactggaaaaga
agagtcccatggacacacgcagacctttggtggtgcctcggtacaggatc
gttagggcctaagggggggggaactgcggcaaaggtatgggctaataccc

gaattcaccataagctattgctaaatggactggatttgtgggaaaaaatg
agctacctttatgaaaattactgaacagtgttcattgatggcacagtatt
acctgcaaatcaaaagggcgtatacagcaaatgcatggaaattaagattc
cgtctcaatggacccctctgctctgtgtggactgagaaaggttccgggaa
tccagctgtcctgttctggggtccctgtgtgtcttgtgtttagactacac
tctctgctaactagcgttacagctgtgtgttctctttcttgcagttcagc
agagcagtttcactggcagacacaaggtaaagtatggcctcttgatggaa
tcttacccctttgatatgtacctctactgaataattttcattttgaactt
tagatttctagacgtgaattacaaaaaaaaaaagaaaaacttaaatgaag
ttatgctagctcatgatttggggctgaggaggttaacgtctcttaatttt
ctggtaacttaatcttctccaaagatacatgtgcttaactttggcttctg
tgcttgatgtcaaggcttgtaaatgtgttgtctaatagagatagtgtttg
attgttacatggtaacctaaagcagtggttctcaaccttcctgatgctgt
gaccctttgatatagttcctcatgccctggtgactcccagccataaaatt
atttcattggtacttcttagctgtaattttgctactgttatgaattataa
tgtaatatctgatgcgcaggatatctgatatgcaatccctgtgaaagggt
cattagaatcccattaacccacagcttgagaaccactgacctaaagcttt
attgttaacctaccttgtttaccactttaatgtatctcctttcagatggc
caaaaagatatcgaagatgaactttacaacgggccttgagctggtggact
tcctgtatccgctctctgcaggagtcaggcattctgggacccacagatta
ctccacaagtgaaagtaaggtcaaggcagactctgtggcccaggctgccc
tcttacctatgccatatacccaagacagacctgaaacctctgttctaatt
ctgcatctctgaatgctggattataggcgtatgtctccacaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_30548683_30549828
seq2: B6Ng01-307B17.g_65_1209

seq1  GAATTCACCATAAGCTATTGCTAAATGGACTGGATTTGTGGGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATAAGCTATTGCTAAATGGACTGGATTTGTGGGAAAAAATG  50

seq1  AGCTACCTTTATGAAAATTACTGAACAGTGTTCATTGATGGCACAGTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCTTTATGAAAATTACTGAACAGTGTTCATTGATGGCACAGTATT  100

seq1  ACCTGCAAATCAAAAGGGCGTATACAGCAAATGCATGGAAATTAAGATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAATCAAAAGGGCGTATACAGCAAATGCATGGAAATTAAGATTC  150

seq1  CGTCTCAATGGACCCCTCTGCTCTGTGTGGACTGAGAAAGGTTCCGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTCAATGGACCCCTCTGCTCTGTGTGGACTGAGAAAGGTTCCGGGAA  200

seq1  TCCAGCTGTCCTGTTCTGGGGTCCCTGTGTGTCTTGTGTTTAGACTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTGTCCTGTTCTGGGGTCCCTGTGTGTCTTGTGTTTAGACTACAC  250

seq1  TCTCTGCTAACTAGCGTTACAGCTGTGTGTTCTCTTTCTTGCAGTTCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTAACTAGCGTTACAGCTGTGTGTTCTCTTTCTTGCAGTTCAGC  300

seq1  AGAGCAGTTTCACTGGCAGACACAAGGTAAAGTATGGCCTCTTGATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTTTCACTGGCAGACACAAGGTAAAGTATGGCCTCTTGATGGAA  350

seq1  TCTTACCCCTTTGATATGTACCTCTACTGAATAATTTTCATTTTGAACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCCCTTTGATATGTACCTCTACTGAATAATTTTCATTTTGAACTT  400

seq1  TAGATTTCTAGACGTGAATTACAAAAAAAAAAAGAAAAACTTAAATGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCTAGACGTGAATTACAAAAAAAAAAAGAAAAACTTAAATGAAG  450

seq1  TTATGCTAGCTCATGATTTGGGGCTGAGGAGGTTAACGTCTCTTAATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCTAGCTCATGATTTGGGGCTGAGGAGGTTAACGTCTCTTAATTTT  500

seq1  CTGGTAACTTAATCTTCTCCAAAGATACATGTGCTTAACTTTGGCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAACTTAATCTTCTCCAAAGATACATGTGCTTAACTTTGGCTTCTG  550

seq1  TGCTTGATGTCAAGGCTTGTAAATGTGTTGTCTAATAGAGATAGTGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGATGTCAAGGCTTGTAAATGTGTTGTCTAATAGAGATAGTGTTTG  600

seq1  ATTGTTACATGGTAACCTAAAGCAGTGGTTCTCAACCTTCCTGATGCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACATGGTAACCTAAAGCAGTGGTTCTCAACCTTCCTGATGCTGT  650

seq1  GACCCTTTGATATAGTTCCTCATGCCCTGGTGACTCCCAGCCATAAAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTTTGATATAGTTCCTCATGCCCTGGTGACTCCCAGCCATAAAATT  700

seq1  ATTTCATTGGTACTTCTTAGCTGTAATTTTGCTACTGTTATGAATTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGGTACTTCTTAGCTGTAATTTTGCTACTGTTATGAATTATAA  750

seq1  TGTAATATCTGATGCGCAGGATATCTGATATGCAATCCCTGTGAAAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATCTGATGCGCAGGATATCTGATATGCAATCCCTGTGAAAGGGT  800

seq1  CATTAGAATCCCATTAACCCACAGCTTGAGAACCACTGACCTAAAGCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAATCCCATTAACCCACAGCTTGAGAACCACTGACCTAAAGCTTT  850

seq1  ATTGTTAACCTACCTTGTTTACCACTTTAATGTATCTCCTTTCAGATGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTAACCTACCTTGTTTACCACTTTAATGTATCTCCTTTCAGATGGC  900

seq1  CAAAAAGATATCGAAGATGAAC-TTACAACGGGCCTTGAGCTGGTGGAC-  948
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  CAAAAAGATATCGAAGATGAACTTTACAACGGGCCTTGAGCTGGTGGACT  950

seq1  TCCTGTATCCGCTCTCTGCAGGAGTCAGGCATTCT-GGACCCACAGGATT  997
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  TCCTGTATCCGCTCTCTGCAGGAGTCAGGCATTCTGGGACCCACA-GATT  999

seq1  ACTCCACAAGTGAAAGT-AGGTCAAAGGCAGACTCCTGTGGCCCAGGCTG  1046
      ||||||||||||||||| ||||| |||||||||| |||||||||||||||
seq2  ACTCCACAAGTGAAAGTAAGGTC-AAGGCAGACT-CTGTGGCCCAGGCTG  1047

seq1  CCTTCTTA-CTATG-CATATACCCAAGACAGACCTGGAACCTCTGGTCCT  1094
      || ||||| ||||| ||||||||||||||||||||| ||||||| || ||
seq2  CCCTCTTACCTATGCCATATACCCAAGACAGACCTGAAACCTCT-GTTCT  1096

seq1  AATTCTGCCATCTCTGGGATGCTGGGGTTATAGGCGTATGTCTCCACACC  1144
      ||||||| ||||||| | ||||| || |||||||||||||||||||||||
seq2  AATTCTG-CATCTCT-GAATGCT-GGATTATAGGCGTATGTCTCCACACC  1143

seq1  CT  1146
      ||
seq2  CT  1145