BAC Information

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BAC

Clone NameB6Ng01-307O16
Chromosome15 (Build37)
Map Location 103,335,578 - 103,485,596
singlet/doubletdoublet
Overlap genePde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
Upstream geneMap3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-307O16.bB6Ng01-307O16.g
ACCGA100556GA100557
length1,0851,135
definitionB6Ng01-307O16.b B6Ng01-307O16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,484,521 - 103,485,596)(103,335,578 - 103,336,734)
sequence
gaattccacacccctaagccccttaccccataaaaccccctaactttcga
gcctcgtggccagcatccgttatctcctgtgtgggatacatgtctgtccg
gagctctgtaattaaacgtcctcatgtaattacaacaagatgggtcctcg
tgtttctttgggtgctctcacactcccaagactacagtgggggtccccga
aagggggtcttacataccctctaagcaaaatctgacccagtgacccctga
atggtcactgtatatatggtatatgaagacatgccttgttttgtgctgac
actggagcttcatgctctgatttccccgctctttgattgtagcaatgatt
ttgacacacccatgtgttgctgttctttggacatgagtaaagacttttac
ctgcattttttttaagatgtcatgtaaatattgaatttggcttatagatg
tttagaatgctagttcttctcatcttctaatctataatatatatatatat
atattggacatcatatcttaaatttcagcatgtttgaatttcctaattct
atgtgtctttttatcatttctaaactttgtttgcaagtacatggctaatt
ttagtaaactatctttgagaaggtaatcaaaataaaaccaacgaatgtat
attaggtttttacattctctattttacctctgtgactccttggcctctgg
gtctctcaggactaatgttctccatgtgaagattggcaccattggtcact
cagtgtcttataacttatttttcttcttggttttaagagaagacaatgac
agctgctccatataaggcatctggtactggtgagcctggctattcttcat
ttctttcctgtcatgtccatcttccctctccaggctcatcttcctcaact
tgcatgtggctaagtagccaacagcagagaaagctacattcctacttata
aagttcatttttagtctaggcaacagatttaatttacatgtatctttgta
gaacaagcagcaaacaaaaactttcagaatttttaaacaatgcctattga
agttcaatataaaagcttatcataaggtttgaaag
gaattccagcatctcaggacagcactaatggcttctcatacattctcttg
gctctcattctaggcagcagggccatgtagtagaatgggtttcttcattt
tcatcaccctccacacttttctagccaaacaaaaataaatctttcctgaa
aattaatggctgtttccctctttgatgtgagaaaagagaaccccagaggt
ggtactgaactctggagagagaaagcagtggaggtttccatagtaccttt
gtttagatggccttccatggtgggcaaggatcagtggcctcactggttag
atgaatttggtctatctcacttcagcaagctggtcctaaggaatactagc
tagctgattgttcatccctaggagtggattctcagtctcattttctcaag
gcacagaaagatttaaaggtagagcccaggttgatggctttctggatttg
aatattgagatggctttgacaacctgaagaaggatttctggctttttttt
ttttcccaccctttctttctttctaggtgggaggagtttcccagccctct
agtcattgtttctaaagaggtgagaaaggaggaattccctaaaatggaaa
tggaacctcccttctctctcactggtgagggtaaaagaggctatttagtc
tggaaacagggaggtagacatgactgtctcaggtctgggcactgaatggt
aatgtagacagatgggatttctacatatctgaatctttttgtatgtatct
tggttctcaaacacaacacatcctacccccccccccctttaaagttctaa
tctaggaatagagactcttagggtgcttttgcctctggacagaaaacctc
cactaatccaattgttcagggtagtttcttgttgaaagaacatctagaat
cccattttctcatactaggacagcgttgaggatcaactaagaattctggg
gctatatgagttagggattctccacagtgggattttacttctggctagag
aaaattttctactcaagagattccacaataagagactgagaatgcagtct
gaactaaggcctagtcatgttgattacatctccagctgataagaacattg
actgctgtcaccttatctagatcgagggcactggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103484521_103485596
seq2: B6Ng01-307O16.b_49_1133 (reverse)

seq1  CTTTCAA--CTTATGAT-AGC-TTTATAT--GACTTC-ATA-GCATTGTT  42
      |||||||  |||||||| ||| |||||||   ||||| ||| ||||||||
seq2  CTTTCAAACCTTATGATAAGCTTTTATATTGAACTTCAATAGGCATTGTT  50

seq1  TAAAAATTCTGAAAGTTTTTGTTTGCTGCTTG-TCTACAAAGATACATGT  91
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAAAATTCTGAAAGTTTTTGTTTGCTGCTTGTTCTACAAAGATACATGT  100

seq1  AAAATTAATCTGTTGCCTAGACTAAAAATGAACTTTATAAGTAGGAATGT  141
      ||| | ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATCTGTTGCCTAGACTAAAAATGAACTTTATAAGTAGGAATGT  150

seq1  AGCTTTCTCTGCTGTTGGCTACTTAGCCACATGCAAGTTGAGGAAGATGA  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCTCTGCTGTTGGCTACTTAGCCACATGCAAGTTGAGGAAGATGA  200

seq1  GCCTGGAGAGGGAAGATGGACATGACAGGAAAGAAATGAAGAATAGCCAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGAGAGGGAAGATGGACATGACAGGAAAGAAATGAAGAATAGCCAG  250

seq1  GCTCACCAGTACCAGATGCCTTATATGGAGCAGCTGTCATTGTCTTCTCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCAGTACCAGATGCCTTATATGGAGCAGCTGTCATTGTCTTCTCT  300

seq1  TAAAACCAAGAAGAAAAATAAGTTATAAGACACTGAGTGACCAATGGTGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAAGAAGAAAAATAAGTTATAAGACACTGAGTGACCAATGGTGC  350

seq1  CAATCTTCACATGGAGAACATTAGTCCTGAGAGACCCAGAGGCCAAGGAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTCACATGGAGAACATTAGTCCTGAGAGACCCAGAGGCCAAGGAG  400

seq1  TCACAGAGGTAAAATAGAGAATGTAAAAACCTAATATACATTCGTTGGTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGAGGTAAAATAGAGAATGTAAAAACCTAATATACATTCGTTGGTT  450

seq1  TTATTTTGATTACCTTCTCAAAGATAGTTTACTAAAATTAGCCATGTACT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTGATTACCTTCTCAAAGATAGTTTACTAAAATTAGCCATGTACT  500

seq1  TGCAAACAAAGTTTAGAAATGATAAAAAGACACATAGAATTAGGAAATTC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACAAAGTTTAGAAATGATAAAAAGACACATAGAATTAGGAAATTC  550

seq1  AAACATGCTGAAATTTAAGATATGATGTCCAATATATATATATATATATT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTGAAATTTAAGATATGATGTCCAATATATATATATATATATT  600

seq1  ATAGATTAGAAGATGAGAAGAACTAGCATTCTAAACATCTATAAGCCAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTAGAAGATGAGAAGAACTAGCATTCTAAACATCTATAAGCCAAA  650

seq1  TTCAATATTTACATGACATCTTAAAAAAAATGCAGGTAAAAGTCTTTACT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTACATGACATCTTAAAAAAAATGCAGGTAAAAGTCTTTACT  700

seq1  CATGTCCAAAGAACAGCAACACATGGGTGTGTCAAAATCATTGCTACAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAAAGAACAGCAACACATGGGTGTGTCAAAATCATTGCTACAAT  750

seq1  CAAAGAGCGGGGAAATCAGAGCATGAAGCTCCAGTGTCAGCACAAAACAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCGGGGAAATCAGAGCATGAAGCTCCAGTGTCAGCACAAAACAA  800

seq1  GGCATGTCTTCATATACCATATATACAGTGACCATTCAGGGGTCACTGGG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCTTCATATACCATATATACAGTGACCATTCAGGGGTCACTGGG  850

seq1  TCAGATTTTGCTTAGAGGGTATGTAAGACCCCCTTTCGGGGACCCCCACT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTTGCTTAGAGGGTATGTAAGACCCCCTTTCGGGGACCCCCACT  900

seq1  GTAGTCTTGGGAGTGTGAGAGCACCCAAAGAAACACGAGGACCCATCTTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTTGGGAGTGTGAGAGCACCCAAAGAAACACGAGGACCCATCTTG  950

seq1  TTGTAATTACATGAGGACGTTTAATTACAGAGCTCCGGACAGACATGTAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTACATGAGGACGTTTAATTACAGAGCTCCGGACAGACATGTAT  1000

seq1  CCCACACAGGAGATAACGGATGCTGGCCACGAGGCTCGAAAGTTAGGGGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACAGGAGATAACGGATGCTGGCCACGAGGCTCGAAAGTTAGGGGG  1050

seq1  TTTTATGGGGTAAGGGGCTTAGGGGTGTGGAATTC  1076
      |||||||||||||||||||||||||||||||||||
seq2  TTTTATGGGGTAAGGGGCTTAGGGGTGTGGAATTC  1085

seq1: chr15_103335578_103336734
seq2: B6Ng01-307O16.g_67_1201

seq1  GAATTCCAGCATCTCAGGACAGCACTAATGGCTTCTCATACATTCTCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATCTCAGGACAGCACTAATGGCTTCTCATACATTCTCTTG  50

seq1  GCTCTCATTCTAGGCAGCAGGGCCATGTAGTAGAATGGGTTTCTTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCATTCTAGGCAGCAGGGCCATGTAGTAGAATGGGTTTCTTCATTT  100

seq1  TCATCACCCTCCACACTTTTCTAGCCAAACAAAAATAAATCTTTCCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACCCTCCACACTTTTCTAGCCAAACAAAAATAAATCTTTCCTGAA  150

seq1  AATTAATGGCTGTTTCCCTCTTTGATGTGAGAAAAGAGAACCCCAGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGGCTGTTTCCCTCTTTGATGTGAGAAAAGAGAACCCCAGAGGT  200

seq1  GGTACTGAACTCTGGAGAGAGAAAGCAGTGGAGGTTTCCATAGTACCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGAACTCTGGAGAGAGAAAGCAGTGGAGGTTTCCATAGTACCTTT  250

seq1  GTTTAGATGGCCTTCCATGGTGGGCAAGGATCAGTGGCCTCACTGGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGATGGCCTTCCATGGTGGGCAAGGATCAGTGGCCTCACTGGTTAG  300

seq1  ATGAATTTGGTCTATCTCACTTCAGCAAGCTGGTCCTAAGGAATACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTGGTCTATCTCACTTCAGCAAGCTGGTCCTAAGGAATACTAGC  350

seq1  TAGCTGATTGTTCATCCCTAGGAGTGGATTCTCAGTCTCATTTTCTCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGATTGTTCATCCCTAGGAGTGGATTCTCAGTCTCATTTTCTCAAG  400

seq1  GCACAGAAAGATTTAAAGGTAGAGCCCAGGTTGATGGCTTTCTGGATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAAAGATTTAAAGGTAGAGCCCAGGTTGATGGCTTTCTGGATTTG  450

seq1  AATATTGAGATGGCTTTGACAACCTGAAGAAGGATTTCTGGCTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAGATGGCTTTGACAACCTGAAGAAGGATTTCTGGCTTTTTTTT  500

seq1  TTTTCCCACCCTTTCTTTCTTTCTAGGTGGGAGGAGTTTCCCAGCCCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCACCCTTTCTTTCTTTCTAGGTGGGAGGAGTTTCCCAGCCCTCT  550

seq1  AGTCATTGTTTCTAAAGAGGTGAGAAAGGAGGAATTCCCTAAAATGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGTTTCTAAAGAGGTGAGAAAGGAGGAATTCCCTAAAATGGAAA  600

seq1  TGGAACCTCCCTTCTCTCTCACTGGTGAGGGTAAAAGAGGCTATTTAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTCCCTTCTCTCTCACTGGTGAGGGTAAAAGAGGCTATTTAGTC  650

seq1  TGGAAACAGGGAGGTAGACATGACTGTCTCAGGTCTGGGCACTGAATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACAGGGAGGTAGACATGACTGTCTCAGGTCTGGGCACTGAATGGT  700

seq1  AATGTAGACAGATGGGATTTCTACATATCTGAATCTTTTTGTATGTATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGACAGATGGGATTTCTACATATCTGAATCTTTTTGTATGTATCT  750

seq1  TGGTTCTCAAACACAACACATCCTACCCCCCCCCCCCTTTAAAGTTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCAAACACAACACATCCTACCCCCCCCCCCCTTTAAAGTTCTAA  800

seq1  TCTAGGAATAGAGACTCTTAGGGTGCTTTTGCCTCTGGACAGAAAACCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGAATAGAGACTCTTAGGGTGCTTTTGCCTCTGGACAGAAAACCTC  850

seq1  CACTAATCCAATTGTTCAGGGTAGTTTCTTGTTGAAAAGAACATCTAGGA  900
      |||||||||||||||||||||||||||||||||| |||||||||||| ||
seq2  CACTAATCCAATTGTTCAGGGTAGTTTCTTGTTG-AAAGAACATCTA-GA  898

seq1  ATCCCA-TTTCTCATACTAGGACAGCGTTGAGGATCAACTAAGAA-TCTG  948
      |||||| |||||||||||||||||||||||||||||||||||||| ||||
seq2  ATCCCATTTTCTCATACTAGGACAGCGTTGAGGATCAACTAAGAATTCTG  948

seq1  GGGCTATATGAGTTAGGGAATTCTCCAACAGTGGGATTTTACTTCTGGCT  998
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  GGGCTATATGAGTTAGGG-ATTCTCC-ACAGTGGGATTTTACTTCTGGCT  996

seq1  AGAAGGAAAAATTTTCTAACTCAGGAGATTCACAAATAAAGAGACTGAGA  1048
      |||    |||||||||| ||||| ||||||| || |  ||||||||||| 
seq2  AGA---GAAAATTTTCT-ACTCAAGAGATTC-CACAATAAGAGACTGAG-  1040

seq1  AATGCAGTCTGAAAATTAGGGGCTAGTCATGTTGATTTAAACATCTCCAG  1098
      |||||||||||  || || || |||||||||||||||   ||||||||||
seq2  AATGCAGTCTG--AACTAAGGCCTAGTCATGTTGATT---ACATCTCCAG  1085

seq1  CTGAATAAGAACAATTTGACCTGGCTGTCCACCCTTATCTAAGATCAGAG  1148
      ||| |||||||||  |||||   ||||||   |||||||| ||||| |||
seq2  CTG-ATAAGAACA--TTGAC--TGCTGTC--ACCTTATCT-AGATC-GAG  1126

seq1  GGCACTGGG  1157
      |||||||||
seq2  GGCACTGGG  1135