BAC Information

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BAC

Clone NameB6Ng01-308C02
Chromosome15 (Build37)
Map Location 103,022,272 - 103,172,607
singlet/doubletdoublet
Overlap geneCbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385
Upstream geneZfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
Downstream geneItga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308C02.bB6Ng01-308C02.g
ACCGA100711GA100712
length1,1661,101
definitionB6Ng01-308C02.b B6Ng01-308C02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,171,433 - 103,172,607)(103,022,272 - 103,023,373)
sequence
gaattccttgggctcaggcaagccatgggtgtgatctagtaccatccctg
agcttacttcttggattcttctatgtctgtcgtctctgaactgagctgcc
tctcctcaaccaccctacctgccctgcagataggatgtgtctcccactcc
gaggcctgagcaacccagaggagaatggagtctgtctgtggagatcagcc
gcccgaaccttctccttgcttgcctgagttggtggaaatggaagagagaa
gtgaagaagtaaacggaagcagagcgactggagatgtcagagggggaagg
ggctcaggagaggcagctggcaagcgggaagatgatctgggggtctcaag
tttcttgacatcaattagggcagccggcctggactcattagtagcctggg
gtgcaggggctcatcaataatgaatctgccccacacaatgctcccccaac
cccccagctgcctgcaaggtcaccgcaccctctagccagctgcctcccat
agtaagctaagcaatccctcatctgagttccacctaactcgggagaccct
ggaaagacagtgtgggcaggtgggcctgaagggcaaggagggggctctcg
aatcagccaagcccagtgctggccctcgttttagtatgtctcctccccag
gggagaaacctggaaaaggagaggaggggctaaacctaggaagcaggctt
tctgttatagaagtgcaggaggattccagcaagttagattcaaagcgaga
agatggcctctcgtggacccagagatcccacatctttcctcaaagcagga
tcacaggactcaaagactagggtgccggcacccatctttcacctagcctt
gagctggagtatcttggcaattgcaaacagcttttcacagatggaaaggc
agacatttgctgaggctcacagtaggaacaaatctaaaaattcctgcact
tgagtagcaatcaagccccaacttcccgccagaagctgggaaatgccctc
ctttcctcaaagtttctgatccaatccctatcactcatgaaccccgcttt
cactcttgcttcaccttccctaaccaatggaggtcattccagtctcaccc
cctctccttgactggatggcctagctgctgcttgacctcaggaactctgc
atgctgtccctccctc
gaattcactgtctcacttccatttagacctggctacaaggtgtgacctgc
ttcctacacaaaatggtacagtgctgagaaaaaccaggggtctctgaaag
ccctttccgtgagaatgtgggttcatggccagcaggcaggggtaaggcaa
ctgctggctactatttggcaggacatgagactgttcctttcccatcctcc
agagaaccctctaggacccctgttaggagtagagtctacccaacagaact
ggagtgtgtatctacagggagctaggaccttgtgctttttcatgggtacc
aatagaaggtcaagtaggggaaaaggaaacctatcatgaagaatctgggg
atgccttagtccctatactgagacagagcaagaaaggctcttgaaccctc
aggtgggcaaacaagtgtccaagatgtcctcagtgggtcagatggtatac
actgaaaagaggtgacagattccacacacagtgaactgaaaagaagcctt
gaggaccaatgctcaattctgaaatggtatacctatttctagaaaaaaac
aaaatacaatgtagctctttttggtaggggaagggagtgttatgttgctt
gagccgtctggcttctatgagagggcagaggcatcggagcatgaagagtt
cagtggacgacctgtcctaggtcagcctggaaaatggaagcaacaatatc
aatccacactaccaagacaatcagcacaagtcatccatgagaataggacc
ttaactcctgcctgcagagaaagacatgaagtagcactcctgcctcaaga
ttccctaacccaaggctcttgaatttctaagtctctttgtgatgcaagac
acagagcccacaagtgccttccctcacagcatcccaagttagactggatg
atcaagactccaacattcacaaacactgtcacatctgaactagcagcatt
gatgagggggttaagggattggggacaagaaaacttcaccagtcactaag
tacttctaaactttggaagtagctcagtgagggctaaaaaacttcgactg
aagttatctcacagccattcctaaggagctggatcagctctggatctgta
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_103171433_103172607
seq2: B6Ng01-308C02.b_46_1211 (reverse)

seq1  GAGGGAGGG-CAGCAGGCAGAGTTCCCAGAAGGCCAAGCAGCCAGCTTTA  49
      ||||||||| ||||| ||||||||||    ||| ||||||| ||||  ||
seq2  GAGGGAGGGACAGCATGCAGAGTTCC--TGAGGTCAAGCAG-CAGC--TA  45

seq1  GGCCAACCCAGCCAGAGGGAGAGGGGGTGAGACTGGGAATTGGAACACTC  99
      |||| | |||| |  | ||||||||||||||||| |||||  || | | |
seq2  GGCC-ATCCAGTC--AAGGAGAGGGGGTGAGACT-GGAAT--GACCTC-C  88

seq1  ATGGTTTAGGGAGGGTGGAGGCAAGAGTGAAAAGCGGGG-TCATGAGTGA  148
      || | ||||||| ||| || ||||||||| ||||||||| ||||||||||
seq2  ATTGGTTAGGGAAGGT-GAAGCAAGAGTG-AAAGCGGGGTTCATGAGTGA  136

seq1  TA-GGATTGGATTCAGAAACTTTGAGGAAAGGAGGGCATTT-CCAGCTTC  196
      || |||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  TAGGGATTGGA-TCAGAAACTTTGAGGAAAGGAGGGCATTTCCCAGCTTC  185

seq1  TGGCGGGAAGTTGGGGCTTGATTGCTAACTCAGGTGCAGGAA-TTTTAGA  245
      |||||||||||||||||||||||||| ||||| ||||||||| |||||||
seq2  TGGCGGGAAGTTGGGGCTTGATTGCT-ACTCAAGTGCAGGAATTTTTAGA  234

seq1  TTTGTTCCTACTGTGAGCCTCAGC-AATGTCTGCC-TTCCATCTGTGAAA  293
      |||||||||||||||||||||||| |||||||||| ||||||||||||||
seq2  TTTGTTCCTACTGTGAGCCTCAGCAAATGTCTGCCTTTCCATCTGTGAAA  284

seq1  AGCTGTTTGCAATTGCCAAGATACTCCAGCTCAAGGCTAGGTGAAAGATG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTGCAATTGCCAAGATACTCCAGCTCAAGGCTAGGTGAAAGATG  334

seq1  GGTGCCGGCACCCTAGTCTTTGAGTCCTGTGATCCTGCTTTGAGGAAAGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCGGCACCCTAGTCTTTGAGTCCTGTGATCCTGCTTTGAGGAAAGA  384

seq1  TGTGGGATCTCTGGGTCCACGAGAGGCCATCTTCTCGCTTTGAATCTAAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGATCTCTGGGTCCACGAGAGGCCATCTTCTCGCTTTGAATCTAAC  434

seq1  TTGCTGGAATCCTCCTGCACTTCTATAACAGAAAGCCTGCTTCCTAGGTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGAATCCTCCTGCACTTCTATAACAGAAAGCCTGCTTCCTAGGTT  484

seq1  TAGCCCCTCCTCTCCTTTTCCAGGTTTCTCCCCTGGGGAGGAGACATACT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCCCTCCTCTCCTTTTCCAGGTTTCTCCCCTGGGGAGGAGACATACT  534

seq1  AAAACGAGGGCCAGCACTGGGCTTGGCTGATTCGAGAGCCCCCTCCTTGC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACGAGGGCCAGCACTGGGCTTGGCTGATTCGAGAGCCCCCTCCTTGC  584

seq1  CCTTCAGGCCCACCTGCCCACACTGTCTTTCCAGGGTCTCCCGAGTTAGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGGCCCACCTGCCCACACTGTCTTTCCAGGGTCTCCCGAGTTAGG  634

seq1  TGGAACTCAGATGAGGGATTGCTTAGCTTACTATGGGAGGCAGCTGGCTA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCAGATGAGGGATTGCTTAGCTTACTATGGGAGGCAGCTGGCTA  684

seq1  GAGGGTGCGGTGACCTTGCAGGCAGCTGGGGGGTTGGGGGAGCATTGTGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGCGGTGACCTTGCAGGCAGCTGGGGGGTTGGGGGAGCATTGTGT  734

seq1  GGGGCAGATTCATTATTGATGAGCCCCTGCACCCCAGGCTACTAATGAGT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGATTCATTATTGATGAGCCCCTGCACCCCAGGCTACTAATGAGT  784

seq1  CCAGGCCGGCTGCCCTAATTGATGTCAAGAAACTTGAGACCCCCAGATCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCGGCTGCCCTAATTGATGTCAAGAAACTTGAGACCCCCAGATCA  834

seq1  TCTTCCCGCTTGCCAGCTGCCTCTCCTGAGCCCCTTCCCCCTCTGACATC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCGCTTGCCAGCTGCCTCTCCTGAGCCCCTTCCCCCTCTGACATC  884

seq1  TCCAGTCGCTCTGCTTCCGTTTACTTCTTCACTTCTCTCTTCCATTTCCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCGCTCTGCTTCCGTTTACTTCTTCACTTCTCTCTTCCATTTCCA  934

seq1  CCAACTCAGGCAAGCAAGGAGAAGGTTCGGGCGGCTGATCTCCACAGACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCAGGCAAGCAAGGAGAAGGTTCGGGCGGCTGATCTCCACAGACA  984

seq1  GACTCCATTCTCCTCTGGGTTGCTCAGGCCTCGGAGTGGGAGACACATCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATTCTCCTCTGGGTTGCTCAGGCCTCGGAGTGGGAGACACATCC  1034

seq1  TATCTGCAGGGCAGGTAGGGTGGTTGAGGAGAGGCAGCTCAGTTCAGAGA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCAGGGCAGGTAGGGTGGTTGAGGAGAGGCAGCTCAGTTCAGAGA  1084

seq1  CGACAGACATAGAAGAATCCAAGAAGTAAGCTCAGGGATGGTACTAGATC  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACAGACATAGAAGAATCCAAGAAGTAAGCTCAGGGATGGTACTAGATC  1134

seq1  ACACCCATGGCTTGCCTGAGCCCAAGGAATTC  1175
      ||||||||||||||||||||||||||||||||
seq2  ACACCCATGGCTTGCCTGAGCCCAAGGAATTC  1166

seq1: chr15_103022272_103023373
seq2: B6Ng01-308C02.g_67_1167

seq1  GAATTCACTGTCTCACTTCCATTTAGACCTGGCTACAAGGTGTGACCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTCACTTCCATTTAGACCTGGCTACAAGGTGTGACCTGC  50

seq1  TTCCTACACAAAATGGTACAGTGCTGAGAAAAACCAGGGGTCTCTGAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACACAAAATGGTACAGTGCTGAGAAAAACCAGGGGTCTCTGAAAG  100

seq1  CCCTTTCCGTGAGAATGTGGGTTCATGGCCAGCAGGCAGGGGTAAGGCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCCGTGAGAATGTGGGTTCATGGCCAGCAGGCAGGGGTAAGGCAA  150

seq1  CTGCTGGCTACTATTTGGCAGGACATGAGACTGTTCCTTTCCCATCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGCTACTATTTGGCAGGACATGAGACTGTTCCTTTCCCATCCTCC  200

seq1  AGAGAACCCTCTAGGACCCCTGTTAGGAGTAGAGTCTACCCAACAGAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACCCTCTAGGACCCCTGTTAGGAGTAGAGTCTACCCAACAGAACT  250

seq1  GGAGTGTGTATCTACAGGGAGCTAGGACCTTGTGCTTTTTCATGGGTACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTATCTACAGGGAGCTAGGACCTTGTGCTTTTTCATGGGTACC  300

seq1  AATAGAAGGTCAAGTAGGGGAAAAGGAAACCTATCATGAAGAATCTGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGGTCAAGTAGGGGAAAAGGAAACCTATCATGAAGAATCTGGGG  350

seq1  ATGCCTTAGTCCCTATACTGAGACAGAGCAAGAAAGGCTCTTGAACCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTAGTCCCTATACTGAGACAGAGCAAGAAAGGCTCTTGAACCCTC  400

seq1  AGGTGGGCAAACAAGTGTCCAAGATGTCCTCAGTGGGTCAGATGGTATAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGCAAACAAGTGTCCAAGATGTCCTCAGTGGGTCAGATGGTATAC  450

seq1  ACTGAAAAGAGGTGACAGATTCCACACACAGTGAACTGAAAAGAAGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAAAGAGGTGACAGATTCCACACACAGTGAACTGAAAAGAAGCCTT  500

seq1  GAGGACCAATGCTCAATTCTGAAATGGTATACCTATTTCTAGAAAAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACCAATGCTCAATTCTGAAATGGTATACCTATTTCTAGAAAAAAAC  550

seq1  AAAATACAATGTAGCTCTTTTTGGTAGGGGAAGGGAGTGTTATGTTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACAATGTAGCTCTTTTTGGTAGGGGAAGGGAGTGTTATGTTGCTT  600

seq1  GAGCCGTCTGGCTTCTATGAGAGGGCAGAGGCATCGGAGCATGAAGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCGTCTGGCTTCTATGAGAGGGCAGAGGCATCGGAGCATGAAGAGTT  650

seq1  CAGTGGACGACCTGTCCTAGGTCAGCCTGGAAAATGGAAGCAACAATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGACGACCTGTCCTAGGTCAGCCTGGAAAATGGAAGCAACAATATC  700

seq1  AATCCACACTACCAAGACAATCAGCACAAGTCATCCATGAGAATAGGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCACACTACCAAGACAATCAGCACAAGTCATCCATGAGAATAGGACC  750

seq1  TTAACTCCTGCCTGCAGAGAAAGACATGAAGTAGCACTCCTGCCTCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCTGCCTGCAGAGAAAGACATGAAGTAGCACTCCTGCCTCAAGA  800

seq1  TTCCCTAACCCAAGGCTCTTGAATTTCTAAGTCTCTTTGTGATGCAAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAACCCAAGGCTCTTGAATTTCTAAGTCTCTTTGTGATGCAAGAC  850

seq1  ACAGAGCCCACAAGTGCCTTCCCTCACAGCATCCCAAGTTAGACTGGATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCCACAAGTGCCTTCCCTCACAGCATCCCAAGTTAGACTGGATG  900

seq1  ATCAAGACTCCAACATTCACAAAACACTGTCAACATCTGAACTAGCAGCA  950
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  ATCAAGACTCCAACATTCAC-AAACACTGTC-ACATCTGAACTAGCAGCA  948

seq1  TTGATGA-GGGGTTAAGGGATTGGGGAC-AGAAA--CTCACCAAGGTCAC  996
      ||||||| |||||||||||||||||||| |||||   ||||||  |||||
seq2  TTGATGAGGGGGTTAAGGGATTGGGGACAAGAAAACTTCACCA--GTCAC  996

seq1  TAAGTACTTCCAAAC-TTGGAAGTAGCTCAGTGAGGGCTAAAAAAACTTC  1045
      |||||||||| |||| ||||||||||||||||||||||| ||||||||||
seq2  TAAGTACTTCTAAACTTTGGAAGTAGCTCAGTGAGGGCT-AAAAAACTTC  1045

seq1  GACTGAAGGTATCCTCCACAGGCAATCCTAAAGGAG-TTGATCAGCTCT-  1093
      |||||||| ||||   ||||| || |||| |||||| | |||||||||| 
seq2  GACTGAAGTTATC--TCACAGCCATTCCT-AAGGAGCTGGATCAGCTCTG  1092

seq1  GATCTGTAA  1102
      |||||||||
seq2  GATCTGTAA  1101