BAC Information

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BAC

Clone NameB6Ng01-308F19
Chromosome15 (Build37)
Map Location 49,317,113 - 49,318,310
singlet/doubletsinglet
Overlap genenone
Upstream geneCsmd3, EG665146, LOC100039600
Downstream geneLOC100039539, LOC665160
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-308F19.bB6Ng01-308F19.g
ACCGA100884GA100885
length1,2051,161
definitionB6Ng01-308F19.b B6Ng01-308F19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcatgtgatttggactctgaataattaggtagaaaatgatatg
catagtcttcaaaatgtttccacactaattattatataaattttagcaat
aacagtatatcttgaaatgaattattatatatttaactacaccaatttta
ttgtgtgccaataaatcttcagtaaattttttctcatataaaaatcagat
gggaattgggacatcaaaaaactaaactagaaaaatttgataactggaga
gaaacttttaaaaacagtgtttccgaatagtctaccatacacagacataa
ttgaaataagtaaaatccattacattattaggtagaaaatatgtctcata
tcctgaaaataaaattcttgagactattttagacaatcataataaataaa
ttaactcttgatattatttagcagtgtgtacttgtcataaagatatattt
ccatcttaggttgaaaagaaaatgtacaagactcatattcaacttgagat
gtggttaaaaaatagatgtgggataaacctaaaagattagacattatacc
ttaaaaagatttcatggcaatgttctgaccttgtgattttctggtagaca
gggcaaatacatttactacttgatttctcaaactaaaattatatccttaa
cagaatagcacattatatcaagcatctgataagccatagtctattagttt
attgaaaagttgatccatttgtcttttctagttattctcaccccacaaat
ctaagtagaagagtttattgtacagcaaattttaaaggatttactttttt
aaaaatccttcaaagatttagagcatgtcaagtgtgcttctccacagttt
cctggtcacaagtcacttttaaagcaacagaacccattgaaagccactat
gatagaaatgccatattgggtgaaatcctcaggggaagttattcacatag
cacagcccaaagaactttctgccagagaggtgtcatagataagatcccta
gaggacatggagaggaaggaaagtccctattacatcactagcagacatta
tcatttgcctgactacttaaatattaacaattgccctgtgattttataat
aaaataatatggattttcagactaatctttggtgtatttggctgtccgat
accttttttgaatgttccttaactttctctccagaatcagggttataaat
atttg
gaattcctgatctttccaaaacttttatcatgaaagggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctaggg
cttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttcttc
ttggaggcactcagcgctatgagtttccctcttagaaatgctttcatgtg
tcccataggttggggtacggtgtggcttcatttcattaaactctagagtc
tttattcttcttatcttctggaccaaggtatcatgagagaatgttatcag
ttcaagtgatgtagcctccatattatgctgtagtggagagatacagtcct
ctctaaacgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_49317113_49318310
seq2: B6Ng01-308F19.b_46_1250 (reverse)

seq1  CAAATAT---TAAACCTGATTCTG--GAGAAATTTAAGG-ACATTAAAAA  44
      |||||||   ||| ||||||||||  |||||| |||||| ||||| ||||
seq2  CAAATATTTATAACCCTGATTCTGGAGAGAAAGTTAAGGAACATTCAAAA  50

seq1  AAAGTATTCGGACAG-CACATACA-CAAAGATTTAGTCCTGAAAT-CATA  91
      || ||| |||||||| || ||||| |||||| ||||||   |||| ||||
seq2  AAGGTA-TCGGACAGCCAAATACACCAAAGA-TTAGTCTGAAAATCCATA  98

seq1  -TATTTTATTATAAAATCACA-GGCAATTGTTAAATATTTTAAGTAGTCA  139
       |||||||||||||||||||| |||||||||| |||| ||||||||||||
seq2  TTATTTTATTATAAAATCACAGGGCAATTGTT-AATA-TTTAAGTAGTCA  146

seq1  GGCAAAATGATATTGTCTGCTAGTGATGT-ATAGTGACTTTCCTTCCTCT  188
      ||| |||||||| |||||||||||||||| |||| |||||||||||||||
seq2  GGC-AAATGATAATGTCTGCTAGTGATGTAATAGGGACTTTCCTTCCTCT  195

seq1  CCATGTCCTCTAGGGATTCTTTATCTATGACACCTCTCTGGCAGAAAGTT  238
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  CCATGTCCTCTAGGGAT--CTTATCTATGACACCTCTCTGGCAGAAAGTT  243

seq1  CTTT-GGCTGTGCTATGTGAATAACTTCCCCTGAGGATTTCA-CCAATAT  286
      |||| ||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTTTGGGCTGTGCTATGTGAATAACTTCCCCTGAGGATTTCACCCAATAT  293

seq1  GGCATTTCTATCATAGTGGCTTTCAATGGGTTCTGTTGCTTTAAAAGTGA  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTCTATCATAGTGGCTTTCAATGGGTTCTGTTGCTTTAAAAGTGA  343

seq1  CTTGTGACCAGGAAACTGTGGAGAAGCACACTTGACATGCTCTAAATCTT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACCAGGAAACTGTGGAGAAGCACACTTGACATGCTCTAAATCTT  393

seq1  TGAAGGATTTTTAAAAAAGTAAATCCTTTAAAATTTGCTGTACAATAAAC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATTTTTAAAAAAGTAAATCCTTTAAAATTTGCTGTACAATAAAC  443

seq1  TCTTCTACTTAGATTTGTGGGGTGAGAATAACTAGAAAAGACAAATGGAT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTACTTAGATTTGTGGGGTGAGAATAACTAGAAAAGACAAATGGAT  493

seq1  CAACTTTTCAATAAACTAATAGACTATGGCTTATCAGATGCTTGATATAA  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTCAATAAACTAATAGACTATGGCTTATCAGATGCTTGATATAA  543

seq1  TGTGCTATTCTGTTAAGGATATAATTTTAGTTTGAGAAATCAAGTAGTAA  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATTCTGTTAAGGATATAATTTTAGTTTGAGAAATCAAGTAGTAA  593

seq1  ATGTATTTGCCCTGTCTACCAGAAAATCACAAGGTCAGAACATTGCCATG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTGCCCTGTCTACCAGAAAATCACAAGGTCAGAACATTGCCATG  643

seq1  AAATCTTTTTAAGGTATAATGTCTAATCTTTTAGGTTTATCCCACATCTA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTTTTAAGGTATAATGTCTAATCTTTTAGGTTTATCCCACATCTA  693

seq1  TTTTTTAACCACATCTCAAGTTGAATATGAGTCTTGTACATTTTCTTTTC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAACCACATCTCAAGTTGAATATGAGTCTTGTACATTTTCTTTTC  743

seq1  AACCTAAGATGGAAATATATCTTTATGACAAGTACACACTGCTAAATAAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAAGATGGAAATATATCTTTATGACAAGTACACACTGCTAAATAAT  793

seq1  ATCAAGAGTTAATTTATTTATTATGATTGTCTAAAATAGTCTCAAGAATT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGAGTTAATTTATTTATTATGATTGTCTAAAATAGTCTCAAGAATT  843

seq1  TTATTTTCAGGATATGAGACATATTTTCTACCTAATAATGTAATGGATTT  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTCAGGATATGAGACATATTTTCTACCTAATAATGTAATGGATTT  893

seq1  TACTTATTTCAATTATGTCTGTGTATGGTAGACTATTCGGAAACACTGTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTTCAATTATGTCTGTGTATGGTAGACTATTCGGAAACACTGTT  943

seq1  TTTAAAAGTTTCTCTCCAGTTATCAAATTTTTCTAGTTTAGTTTTTTGAT  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTTTCTCTCCAGTTATCAAATTTTTCTAGTTTAGTTTTTTGAT  993

seq1  GTCCCAATTCCCATCTGATTTTTATATGAGAAAAAATTTACTGAAGATTT  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAATTCCCATCTGATTTTTATATGAGAAAAAATTTACTGAAGATTT  1043

seq1  ATTGGCACACAATAAAATTGGTGTAGTTAAATATATAATAATTCATTTCA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACACAATAAAATTGGTGTAGTTAAATATATAATAATTCATTTCA  1093

seq1  AGATATACTGTTATTGCTAAAATTTATATAATAATTAGTGTGGAAACATT  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATACTGTTATTGCTAAAATTTATATAATAATTAGTGTGGAAACATT  1143

seq1  TTGAAGACTATGCATATCATTTTCTACCTAATTATTCAGAGTCCAAATCA  1186
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACTATGCATATCATTTTCTACCTAATTATTCAGAGTCCAAATCA  1193

seq1  CATGAAGAATTC  1198
      ||||||||||||
seq2  CATGAAGAATTC  1205