BAC Information

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BAC

Clone NameB6Ng01-310B07
Chromosome15 (Build37)
Map Location 13,572,797 - 13,716,674
singlet/doubletdoublet
Overlap geneLOC666708
Upstream gene6030458C11Rik, Rnasen, Cdh6, LOC100039907, LOC666686, LOC239338
Downstream geneLOC674819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310B07.bB6Ng01-310B07.g
ACCGA102158GA102159
length1,1431,181
definitionB6Ng01-310B07.b B6Ng01-310B07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,572,797 - 13,573,946)(13,715,484 - 13,716,674)
sequence
gaattcaaagagctagtaaaactgtagaagaggctgtagaaaaggagaat
agagtgagttttataaaaacagatgcataacagaataaaagggtagtaac
cttaaaggactcagaccacaaatattgccacattctttttctttattgtt
gatggacctaaaaactttaattcagaaatttaatgaaaagtcacagaggg
gatactttatgtttccaaatataaaggaaattcttactagattctactgt
agaggctaagggataccaaggtgcttagcccagtactgggaggagggaca
cttggaagggcaactcttccttaggagtcagttgtcaccaatatgttctt
tggaacactctagcgcttgcattcagtttctttttccctgcccccacttc
ataaaactcagaccttcattaagacctgttagcctttctggagtccttca
gctccttatccagtttgtacctgtgtttttgcccaaatgaaagtttacat
atctacttctattgtattattatcatcaccaaatgctactgagattcatc
agaattcaaatgtgaagattagagattttgagtgagcttatgcacagact
gtgggtgatgagatgggagagttacacttagtcactcatggtaaacatta
gtgctgaagcttgtacttgtgatcaagaaagtgtctgctgatgtatggtt
cgctagagtatgaagagctaggaacttttggtttaacaatgcctattgta
gcattggtgttttctggtaacccctgtaagttattctccagcaccctccc
ttataaagagaggtcatttcctcgataattgaagactttgcagaaactac
acctgcataaaaaaactaggcattgatccttttacaaagtgctcatttgt
ctgcactgcccaagtcagataattagcccaagttgaagaataatcatctt
ttattagtgaagaagagagaaagttatattatgtggtagaagctgaatat
taactggctttactatatggagccagagattatttatgcatgggattttg
atggcaaatcttgtatattctataagaaatattcttaggagggagaatat
ttacctcctctagacaaggaacatattctagaaagatcctaaa

gaattcttgtaaaggacatcctatattgaaaattacactcttaggtggaa
ataattatttttatagagtagagccaatccaaaattccacagttaaaaac
aacatgagttatagtcatgaataaaacaaagttgagactaaatacatttt
aaaccttgagtttttgtaatgacttgagtcgtttgtttttctgtattgat
tagcgccattatcaatgtcccatgctgcatatagctcctgtaaggattaa
atagatacaagtcggttcagtaattcattttttgaagtgaaacttgctca
acagactaagcatgagatacatactgacaagaattaattaacatcattac
tgttttctaaagtatatttttagaaatcctagtatgaaaaaaaatgttct
tatcgtcaaaataaattcaaattgtcagactcagatgtgcaaggatataa
ttttctatatttttactcaccaagactttatattgagctaactttccaac
tgatgaaggaaacccactttaaactccggaaagccctgtgggatgtacaa
catcttacttagtgggtcattatctagcaaagctaaacctctcctgagat
attctttgtcttgaatattgactaagcctgtgggccaagtgcacacccct
gactttgtgtgtaaaggactccttgctctagaggctggctccacattggg
ctcggtgaagccaaaaagaagttctatagctcttacacagaatcagcacc
cagagtccttttgattccatttctcagctttcattgtttctactgcaatg
cttttacctctttccagttctaaaacaagaaaaacaaacacagtagctgt
ggaaaggcaatgcgcaactttgtcttttcaagcagacattctttgatagc
atcatggtattcttgtattagctcaggacactggtcgccactcaccagag
taaatatcccaggaacccaggttttcaaagcatctgtacacaaccttgaa
attatttgggcaacagtaaagttgcaattaaaacctttaagaaacttgtg
aaaaagaaactgaaactgcattatagtacaaacaattatctgattttctt
agcatatagatgatcttttattaagttttgtttttacttatgtcatgatc
tcagcatgcatgatattcaaaatagttcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_13572797_13573946
seq2: B6Ng01-310B07.b_46_1188

seq1  GAATTCAAAGAGCTAGTAAAACTGTAGAAGAGGCTGTAGAAAAGGAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGCTAGTAAAACTGTAGAAGAGGCTGTAGAAAAGGAGAAT  50

seq1  AGAGTGAGTTTTATAAAAACAGATGCATAACAGAATAAAAGGGTAGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAGTTTTATAAAAACAGATGCATAACAGAATAAAAGGGTAGTAAC  100

seq1  CTTAAAGGACTCAGACCACAAATATTGCCACATTCTTTTTCTTTATTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAGGACTCAGACCACAAATATTGCCACATTCTTTTTCTTTATTGTT  150

seq1  GATGGACCTAAAAACTTTAATTCAGAAATTTAATGAAAAGTCACAGAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGACCTAAAAACTTTAATTCAGAAATTTAATGAAAAGTCACAGAGGG  200

seq1  GATACTTTATGTTTCCAAATATAAAGGAAATTCTTACTAGATTCTACTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTTATGTTTCCAAATATAAAGGAAATTCTTACTAGATTCTACTGT  250

seq1  AGAGGCTAAGGGATACCAAGGTGCTTAGCCCAGTACTGGGAGGAGGGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCTAAGGGATACCAAGGTGCTTAGCCCAGTACTGGGAGGAGGGACA  300

seq1  CTTGGAAGGGCAACTCTTCCTTAGGAGTCAGTTGTCACCAATATGTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGGGCAACTCTTCCTTAGGAGTCAGTTGTCACCAATATGTTCTT  350

seq1  TGGAACACTCTAGCGCTTGCATTCAGTTTCTTTTTCCCTGCCCCCACTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACACTCTAGCGCTTGCATTCAGTTTCTTTTTCCCTGCCCCCACTTC  400

seq1  ATAAAACTCAGACCTTCATTAAGACCTGTTAGCCTTTCTGGAGTCCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTCAGACCTTCATTAAGACCTGTTAGCCTTTCTGGAGTCCTTCA  450

seq1  GCTCCTTATCCAGTTTGTACCTGTGTTTTTGCCCAAATGAAAGTTTACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTATCCAGTTTGTACCTGTGTTTTTGCCCAAATGAAAGTTTACAT  500

seq1  ATCTACTTCTATTGTATTATTATCATCACCAAATGCTACTGAGATTCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTCTATTGTATTATTATCATCACCAAATGCTACTGAGATTCATC  550

seq1  AGAATTCAAATGTGAAGATTAGAGATTTTGAGTGAGCTTATGCACAGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCAAATGTGAAGATTAGAGATTTTGAGTGAGCTTATGCACAGACT  600

seq1  GTGGGTGATGAGATGGGAGAGTTACACTTAGTCACTCATGGTAAACATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGATGAGATGGGAGAGTTACACTTAGTCACTCATGGTAAACATTA  650

seq1  GTGCTGAAGCTTGTACTTGTGATCAAGAAAGTGTCTGCTGATGTATGGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAAGCTTGTACTTGTGATCAAGAAAGTGTCTGCTGATGTATGGTT  700

seq1  CGCTAGAGTATGAAGAGCTAGGAACTTTTGGTTTAACAATGCCTATTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGAGTATGAAGAGCTAGGAACTTTTGGTTTAACAATGCCTATTGTA  750

seq1  GCATTGGTGTTTTCTGGTAACCCCTGTAAGTTATTCTCCAGCACCCTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGTGTTTTCTGGTAACCCCTGTAAGTTATTCTCCAGCACCCTCCC  800

seq1  TTATAAAGAGAGGTCATTTCCTCGATAATTGAAGACTTTGCAGAAACTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGAGAGGTCATTTCCTCGATAATTGAAGACTTTGCAGAAACTAC  850

seq1  ACCTGCATAAAAAAACTAGGCATTGATCCTTTTACAAAGTGCTCATTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCATAAAAAAACTAGGCATTGATCCTTTTACAAAGTGCTCATTTGT  900

seq1  CTGCACTGCCCAAGTCAGATAATTAGCCCAAGTTGAAGAATAATCATCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGCCCAAGTCAGATAATTAGCCCAAGTTGAAGAATAATCATCTT  950

seq1  TTATTAGTGAAGAAGAGAAGAAAGTTATATTATGTGGTAGGAAGCTGAAA  1000
      ||||||||||||||||| ||||||||||||||||||||| ||||||||| 
seq2  TTATTAGTGAAGAAGAG-AGAAAGTTATATTATGTGGTA-GAAGCTGAA-  997

seq1  TAATTAACTGGCTTTACTATATGGAGCCAGAGAATTATTTATGCCATGGG  1050
        |||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  -TATTAACTGGCTTTACTATATGGAGCCAGAG-ATTATTTATG-CATGGG  1044

seq1  ATTTTGATGGCCAAATCTTGTATAATTCTATAAGGAAATATTCTTA-GAG  1099
      |||||||||| |||||||||||| ||||||||| |||||||||||| |||
seq2  ATTTTGATGG-CAAATCTTGTAT-ATTCTATAA-GAAATATTCTTAGGAG  1091

seq1  GGAG-ATATTTAACTCTCTTAGGACAAG--ACATATTCTAGAAAAGATCC  1146
      |||| ||||||| ||| ||   ||||||  ||||||||||| ||||||||
seq2  GGAGAATATTTACCTC-CTCTAGACAAGGAACATATTCTAG-AAAGATCC  1139

seq1  TAAA  1150
      ||||
seq2  TAAA  1143


seq1: chr15_13715484_13716674
seq2: B6Ng01-310B07.g_69_1249 (reverse)

seq1  CAAGAACTATTTTAAATATCATGCAATGCTGAGA--ATGTATAAACATAA  48
      ||||||||||||| |||||||||| |||||||||  |||     ||||| 
seq2  CAAGAACTATTTTGAATATCATGC-ATGCTGAGATCATG-----ACATA-  43

seq1  CAGTAAAAACAAAACTTTATTAAAAAGATCATCTTATATGCTAGAAAAAT  98
       |||||||||||||||| ||  ||||||||||| |||||||||  |||||
seq2  -AGTAAAAACAAAACTTAAT--AAAAGATCATC-TATATGCTAAGAAAAT  89

seq1  CAGATAATTTTGTTTGTACTATAATGCAGTTTTCAGTTTTCTTTTTCAAC  148
      |||||||  |||||||||||||||||||| |||||| |||||||||||  
seq2  CAGATAA--TTGTTTGTACTATAATGCAG-TTTCAG-TTTCTTTTTCACA  135

seq1  AGTTTCTTAAAGGTTTTAATTGCAACTTTACTGTTGCCAAAAT-ATTTCA  197
      |||||||||||||||||||||||||||||||||||||| |||| ||||||
seq2  AGTTTCTTAAAGGTTTTAATTGCAACTTTACTGTTGCCCAAATAATTTCA  185

seq1  AGGTTGTGTACAGATGCTTTG-AAACCTGGGTTCTTGGAATATTTACTCT  246
      ||||||||||||||||||||| |||||||||||| ||| |||||||||||
seq2  AGGTTGTGTACAGATGCTTTGAAAACCTGGGTTCCTGGGATATTTACTCT  235

seq1  GGTGAGTGGCGACCAGTGTCCTGAGCTAATACAAGAATACCATGATGCTA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTGGCGACCAGTGTCCTGAGCTAATACAAGAATACCATGATGCTA  285

seq1  TCAAAGAATGTCTGCTTGAAAAGACAAAGTTGCGCATTGCC-TTCCACAG  345
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCAAAGAATGTCTGCTTGAAAAGACAAAGTTGCGCATTGCCTTTCCACAG  335

seq1  CTACTGTGTTTGTTTTTCTTGTTTTAGAACTGGAAAGAGGTAAAAGCATT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTTTGTTTTTCTTGTTTTAGAACTGGAAAGAGGTAAAAGCATT  385

seq1  GCAGTAGAAACAATGAAAGCTGAGAAATGGAATCAAAAGGACTCTGGGTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGAAACAATGAAAGCTGAGAAATGGAATCAAAAGGACTCTGGGTG  435

seq1  CTGATTCTGTGTAAGAGCTATAGAACTTCTTTTTGGCTTCACCGAGCCCA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTGTGTAAGAGCTATAGAACTTCTTTTTGGCTTCACCGAGCCCA  485

seq1  ATGTGGAGCCAGCCTCTAGAGCAAGGAGTCCTTTACACACAAAGTCAGGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAGCCAGCCTCTAGAGCAAGGAGTCCTTTACACACAAAGTCAGGG  535

seq1  GTGTGCACTTGGCCCACAGGCTTAGTCAATATTCAAGACAAAGAATATCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTTGGCCCACAGGCTTAGTCAATATTCAAGACAAAGAATATCT  585

seq1  CAGGAGAGGTTTAGCTTTGCTAGATAATGACCCACTAAGTAAGATGTTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGTTTAGCTTTGCTAGATAATGACCCACTAAGTAAGATGTTGT  635

seq1  ACATCCCACAGGGCTTTCCGGAGTTTAAAGTGGGTTTCCTTCATCAGTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCCACAGGGCTTTCCGGAGTTTAAAGTGGGTTTCCTTCATCAGTTG  685

seq1  GAAAGTTAGCTCAATATAAAGTCTTGGTGAGTAAAAATATAGAAAATTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTAGCTCAATATAAAGTCTTGGTGAGTAAAAATATAGAAAATTAT  735

seq1  ATCCTTGCACATCTGAGTCTGACAATTTGAATTTATTTTGACGATAAGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCACATCTGAGTCTGACAATTTGAATTTATTTTGACGATAAGAA  785

seq1  CATTTTTTTTCATACTAGGATTTCTAAAAATATACTTTAGAAAACAGTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTCATACTAGGATTTCTAAAAATATACTTTAGAAAACAGTAA  835

seq1  TGATGTTAATTAATTCTTGTCAGTATGTATCTCATGCTTAGTCTGTTGAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTAATTAATTCTTGTCAGTATGTATCTCATGCTTAGTCTGTTGAG  885

seq1  CAAGTTTCACTTCAAAAAATGAATTACTGAACCGACTTGTATCTATTTAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCACTTCAAAAAATGAATTACTGAACCGACTTGTATCTATTTAA  935

seq1  TCCTTACAGGAGCTATATGCAGCATGGGACATTGATAATGGCGCTAATCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTACAGGAGCTATATGCAGCATGGGACATTGATAATGGCGCTAATCA  985

seq1  ATACAGAAAAACAAACGACTCAAGTCATTACAAAAACTCAAGGTTTAAAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGAAAAACAAACGACTCAAGTCATTACAAAAACTCAAGGTTTAAAA  1035

seq1  TGTATTTAGTCTCAACTTTGTTTTATTCATGACTATAACTCATGTTGTTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTAGTCTCAACTTTGTTTTATTCATGACTATAACTCATGTTGTTT  1085

seq1  TTAACTGTGGAATTTTGGATTGGCTCTACTCTATAAAAATAATTATTTCC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTGGAATTTTGGATTGGCTCTACTCTATAAAAATAATTATTTCC  1135

seq1  ACCTAAGAGTGTAATTTTCAATATAGGATGTCCTTTACAAGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAGTGTAATTTTCAATATAGGATGTCCTTTACAAGAATTC  1181


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