BAC Information

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BAC

Clone NameB6Ng01-310E22
Chromosome15 (Build37)
Map Location 69,633,612 - 69,771,308
singlet/doubletdoublet
Overlap genenone
Upstream geneEG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310E22.bB6Ng01-310E22.g
ACCGA102320GA102321
length1,209210
definitionB6Ng01-310E22.b B6Ng01-310E22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,633,612 - 69,634,812)(69,771,099 - 69,771,308)
sequence
gaattcagggaacaacagtatagtcttactacagtataatcaatccacaa
acactgacattcactggattctgtatttctttgtgcatcgatgcaatgtt
attaagaagctgtggttcaagacaggaaagaagctatagtgatgactact
tcttgacaatggaactttgaactttggtctctgtacatcttcttgccttt
ataaaatgccttggtcttgggaaggttctatgtcccagtataggggaatg
ccagggccaggaagcgggagtgggtgggttgggaagcagggcaaggggac
aggggataggggattttccagagaggaaaataggaaagaagataacattt
gaaatgtaaataaagaaaatatctaataaaaaataatgtaacttaaaaaa
ataaaaaaaatatttggaaggattcaaagagtcaatgcatacgaaaaccc
tgtttaatagagcttagctattccattagaaatgatggaatatgcttaca
gtctcagtactggttaaagtctaaaagagggccagttaggtaacttattg
agcagaaactcaaccccaaattctgagaacatgagtccaatttctgtgac
caatatcgtaaaaggggtgaaccaatcccagaaaattgtcctctaatctc
tgcatatgcaccagacatgcacacacacacacacacacacacacacacac
actctctctctctaaataagtaattaaacattaaataaaaaagactcatc
atctcaaaacacagaagtgaaattttttttcttttgtgtttaacaatcac
cagatcagtcacttgctgagacttacaagtaagtgtgtggagaataacag
aaaataaaaagcaaggatgaagaacgaagtagcttcattctcacatttta
ttccacatgtacaagatgcaggctgccaggtaaaggccaatgatgacatg
gtcaggtgattcatagattctcttttccacatccacttttgtttattctt
tacaaaacctttgcaatctctgagattacacagtaacatgaattctcatt
acttaaatttgctttatgtactactataatttttccttgtccaatttatt
tttggtgccatctgaagactttatacccattacttctgttaatatgaatg
ttcattgcatgtgtatgaaacttcaagggaaggtttttctttccttcagt
gtcgccttc

tgcctttgagagggaagggttgatgtgtcagtcacttcatgatgtctcaa
ctcaatatcagattgggaggatgaagcagcagccatttattttctcatag
ttctaaagatggaaagtcaggatcatgctttagttagttttggtctctat
tcacatagatttttgattttcattgtggggtgtttgtgtatgtgtgtgtg
tgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_69633612_69634812
seq2: B6Ng01-310E22.b_41_1249

seq1  GAATTCAGGGAACAACAGTATAGTCTTACTACAGTATAATCAATCCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAACAACAGTATAGTCTTACTACAGTATAATCAATCCACAA  50

seq1  ACACTGACATTCACTGGATTCTGTATTTCTTTGTGCATCGATGCAATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGACATTCACTGGATTCTGTATTTCTTTGTGCATCGATGCAATGTT  100

seq1  ATTAAGAAGCTGTGGTTCAAGACAGGAAAGAAGCTATAGTGATGACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAAGCTGTGGTTCAAGACAGGAAAGAAGCTATAGTGATGACTACT  150

seq1  TCTTGACAATGGAACTTTGAACTTTGGTCTCTGTACATCTTCTTGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACAATGGAACTTTGAACTTTGGTCTCTGTACATCTTCTTGCCTTT  200

seq1  ATAAAATGCCTTGGTCTTGGGAAGGTTCTATGTCCCAGTATAGGGGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATGCCTTGGTCTTGGGAAGGTTCTATGTCCCAGTATAGGGGAATG  250

seq1  CCAGGGCCAGGAAGCGGGAGTGGGTGGGTTGGGAAGCAGGGCAAGGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCCAGGAAGCGGGAGTGGGTGGGTTGGGAAGCAGGGCAAGGGGAC  300

seq1  AGGGGATAGGGGATTTTCCAGAGAGGAAAATAGGAAAGAAGATAACATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATAGGGGATTTTCCAGAGAGGAAAATAGGAAAGAAGATAACATTT  350

seq1  GAAATGTAAATAAAGAAAATATCTAATAAAAAATAATGTAACTTAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAAATAAAGAAAATATCTAATAAAAAATAATGTAACTTAAAAAA  400

seq1  ATAAAAAAAATATTTGGAAGGATTCAAAGAGTCAATGCATACGAAAACCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAAAATATTTGGAAGGATTCAAAGAGTCAATGCATACGAAAACCC  450

seq1  TGTTTAATAGAGCTTAGCTATTCCATTAGAAATGATGGAATATGCTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAATAGAGCTTAGCTATTCCATTAGAAATGATGGAATATGCTTACA  500

seq1  GTCTCAGTACTGGTTAAAGTCTAAAAGAGGGCCAGTTAGGTAACTTATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGTACTGGTTAAAGTCTAAAAGAGGGCCAGTTAGGTAACTTATTG  550

seq1  AGCAGAAACTCAACCCCAAATTCTGAGAACATGAGTCCAATTTCTGTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAAACTCAACCCCAAATTCTGAGAACATGAGTCCAATTTCTGTGAC  600

seq1  CAATATCGTAAAAGGGGTGAACCAATCCCAGAAAATTGTCCTCTAATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCGTAAAAGGGGTGAACCAATCCCAGAAAATTGTCCTCTAATCTC  650

seq1  TGCATATGCACCAGACATGCACACACACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATATGCACCAGACATGCACACACACACACACACACACACACACACAC  700

seq1  ACTCTCTCTCTCTAAATAAGTAATTAAACATTAAAT-AAAAAGACTCATC  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTCTCTCTCTCTAAATAAGTAATTAAACATTAAATAAAAAAGACTCATC  750

seq1  ATCTCAAAACACAGAAGTGAAA-TTTTTTTCTTTTGTGTTTAACAATCAC  798
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATCTCAAAACACAGAAGTGAAATTTTTTTTCTTTTGTGTTTAACAATCAC  800

seq1  CAGATCAGTCACTTGCTGAGACTTACAAGTAAGTGTGTGGAGAATAACAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCAGTCACTTGCTGAGACTTACAAGTAAGTGTGTGGAGAATAACAG  850

seq1  AAAATAAAAAGCAAGGATGAAGAACGAAGTAGCTTCATTCTCACATTTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAGCAAGGATGAAGAACGAAGTAGCTTCATTCTCACATTTTA  900

seq1  TTCCACATGTAACAAGATGCAGGCTGCCAGGTAAAGGCCAATGATGACAT  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCCACATGT-ACAAGATGCAGGCTGCCAGGTAAAGGCCAATGATGACAT  949

seq1  GGTCAGGTGATTCATAGATTCTCTTT--CACATCCACTTTTGTTTA-TCT  995
      ||||||||||||||||||||||||||  |||||||||||||||||| |||
seq2  GGTCAGGTGATTCATAGATTCTCTTTTCCACATCCACTTTTGTTTATTCT  999

seq1  TTACAAAA-CTTTGCAATCTCTTGAAGATACACAGTAACATG-ATTCTCA  1043
      |||||||| |||||||||||| |||   |||||||||||||| |||||||
seq2  TTACAAAACCTTTGCAATCTC-TGAGATTACACAGTAACATGAATTCTCA  1048

seq1  -TACTTAAATTTGCTTTATGTTACTACTATA--TTTTTCTTGTCAATTTT  1090
       ||||||||||||||||||| ||||||||||  |||| |||||| | |||
seq2  TTACTTAAATTTGCTTTATG-TACTACTATAATTTTTCCTTGTCCAATTT  1097

seq1  ATTTTTTGGTG-CATCTGAAGAC-TTATACCCATAATTTTCTGTTAATAA  1138
      | ||||||||| ||||||||||| |||||||||| |  ||||||||||| 
seq2  A-TTTTTGGTGCCATCTGAAGACTTTATACCCATTA-CTTCTGTTAATAT  1145

seq1  TGATGTTCAATGCAATGTTGTATGGAAAACT--CAGGGAAGTGTTTTCTT  1186
        ||||||| ||| ||| ||||||  |||||   |||||||  |||||||
seq2  GAATGTTCATTGC-ATG-TGTATG--AAACTTCAAGGGAAGGTTTTTCTT  1191

seq1  TCCTTCAGT---GCCTTC  1201
      |||||||||   ||||||
seq2  TCCTTCAGTGTCGCCTTC  1209


seq1: chr15_69771099_69771308
seq2: B6Ng01-310E22.g_75_284 (reverse)

seq1  CACACACACACACACACACATACACAAACACCCCACAATGAAAATCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACACAAACACCCCACAATGAAAATCAAAA  50

seq1  ATCTATGTGAATAGAGACCAAAACTAACTAAAGCATGATCCTGACTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTGAATAGAGACCAAAACTAACTAAAGCATGATCCTGACTTTCC  100

seq1  ATCTTTAGAACTATGAGAAAATAAATGGCTGCTGCTTCATCCTCCCAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAGAACTATGAGAAAATAAATGGCTGCTGCTTCATCCTCCCAATC  150

seq1  TGATATTGAGTTGAGACATCATGAAGTGACTGACACATCAACCCTTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTGAGTTGAGACATCATGAAGTGACTGACACATCAACCCTTCCCT  200

seq1  CTCAAAGGCA  210
      ||||||||||
seq2  CTCAAAGGCA  210


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