BAC Information

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BAC

Clone NameB6Ng01-311A13
Chromosome15 (Build37)
Map Location 3,581,390 - 3,582,522
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674207, LOC666163, EG666167, Sepp1, LOC100039139, Ghr
Downstream geneLOC223278, Fbxo4, AW549877, LOC100039196, Oxct1, Plcxd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311A13.bB6Ng01-311A13.g
ACCGA102853GA102854
length8711,115
definitionB6Ng01-311A13.b B6Ng01-311A13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgatccccattttggggggttatttgattttc
tggagtccacctccaaatgctgacaccattgcatacaccagcaagatttt
gctgaaaggaccgtgatatagctgtctcttgtgaggctatgccggtgcct
ggcaaacacagaagtggatgctcacagtcagctattggatggaactcagg
gcccccaatggaggagctagagaaagtacctgtagtggctattcctggtt
gtcaacttgactgtatttggaatgaactacaatacagaattggaaggctc
accagtgacccttatctggaggcttggagatagaagattctgatctggat
cttggtatggagatcttgaggcatagtggattccagaagattaaatctct
gagttcaaggtcatctggaattaagcgtgtggtagaacacacctttaatc
tgggctacaccttctgcttggaagaagggcgtcttgctcttgctccttcg
cctgcttgctgtgtgagactgagtaactgctagatccttggacttccatt
catacctgcgactgaaccattgttgggaattgggctgccaactgtaagtc
atcaataaattcttttactatatagagactatccataaattctgtgactc
tagagaaccctgactaataccgtacccaaggatctaaaggggtctgcaac
cctattggtggaacaacaatatgaactaaccagtacccccagagctcgtg
tctctagctgcatatgtagcagaagatggcctcgtcagccatcattggga
agagaggccccttggtcttgcaaactttatatgcctcagtacagggaaac
accagggccaagaagtgggag
gaattccaggtcactcaagctaaatcatgagttcacaaaaccctgtgtga
tagataatatttattataatcattgcaattttctagaattatctaggggc
aagtttctaagtataccagtgaggaattgtcttggttaagttagccactg
gccaagcctgtaaggattgtcttgattaggttaactaaagtaggaaaaag
aattctaaaagtaggtggtaccattctctaggcctgtgtcctagactgca
caaacagaagtgcagtctagtgagtgagatatatgatcttctctgcttct
ggacggtgggtgcaatgtgctcagctccttcaagtgcttgctgctggaat
atttttgctgtagtaaatggtagcctcacatgatgagccaaaataaatca
ttcatttcttaagccactcttgtcagggtattttaccaaaggaagagaaa
aggaaactaagtaacagcaaacttgttcttactgtcaatgattggaagtg
ttaaggctcacttactgtcttactatataaggagttattctctaagtggg
gtagaacatacgagccatgttattcatgacttagtagttcttagaggaag
aatctctatacaaaatagtaacatgaacagcaacttcatttcccattagt
tttgcaataaaagtttctctaaggaacaatgaaaacactagaacaaatag
cacactaggacattggttcatactggtttcagcaatgtggtttttgatta
tggttaacattgacaattgtttagagttctattagtcctcttctgtttcc
tttgtaagcagaaattataacagaactcattcaatagaatatcttttcag
agttagattaactaattcaggcaaatagtaactataatgtctagcacata
gtaaataatcatcaccactagcactggtaatgtgattcatgggttagtca
ttgctcttgcacaaatgggtcttgatgttttctctcaacagtgatggcat
gcattctaccaatattggggtctgcactacatgatcacatcatattataa
ttgggtacagaataagagcactttatccagaactattaggttaaaagttc
aatgcccaataacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_3581390_3582522
seq2: B6Ng01-311A13.g_67_1181 (reverse)

seq1  GTGTTATTGTGCATTGAACTTTTTTATACTAAATAAGTTCTTTGGATAAA  50
      ||||||||| |||||||||  |||||  ||||   |||||  ||||||||
seq2  GTGTTATTGGGCATTGAAC--TTTTAACCTAA--TAGTTC--TGGATAAA  44

seq1  GTGCTCTTTTATTTTCTGTTACCCATTATTAATATGATTGTGATCAATGG  100
      |||||||    | ||||| |||||| |  |||||||| ||||||||   |
seq2  GTGCTCT----TATTCTG-TACCCAATTATAATATGA-TGTGATCA--TG  86

seq1  TAGTGGCAGACCCCAATATTGGTTAGAATGCAATGCCATCACTTGTTGAG  150
      |||| ||||||||||||||||| |||||||| |||||||||| |||||||
seq2  TAGT-GCAGACCCCAATATTGG-TAGAATGC-ATGCCATCAC-TGTTGAG  132

seq1  AGAAAACATCAAGACCCATTTTGTGCAAGAGCAATGACTAACCCATGAAT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGAAAACATCAAGACCCA-TTTGTGCAAGAGCAATGACTAACCCATGAAT  181

seq1  CACATTACCAGTGCTAGTGGTGATGATTATTTACTATGTGCTAGACATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACCAGTGCTAGTGGTGATGATTATTTACTATGTGCTAGACATTA  231

seq1  TAGTTACTATTTGCCTGAATTAGTTAATCTAACTCTG-AAAGATATTCTA  299
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TAGTTACTATTTGCCTGAATTAGTTAATCTAACTCTGAAAAGATATTCTA  281

seq1  TTGAATGAGTTCTGTTATAATTTCTGCTTACAAAGGAAACAGAAGAGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGAGTTCTGTTATAATTTCTGCTTACAAAGGAAACAGAAGAGGAC  331

seq1  TAATAGAACTCTAAACAATTGTCAATGTTAACCATAATCAAAAACCACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGAACTCTAAACAATTGTCAATGTTAACCATAATCAAAAACCACAT  381

seq1  TGCTGAAACCAGTATGAACCAATGTCCTAGTGTGCTATTTGTTCTAGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAACCAGTATGAACCAATGTCCTAGTGTGCTATTTGTTCTAGTGT  431

seq1  TTTCATTGTTCCTTAGAGAAACTTTTATTGCAAAACTAATGGGAAATGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGTTCCTTAGAGAAACTTTTATTGCAAAACTAATGGGAAATGAA  481

seq1  GTTGCTGTTCATGTTACTATTTTGTATAGAGATTCTTCCTCTAAGAACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTCATGTTACTATTTTGTATAGAGATTCTTCCTCTAAGAACTA  531

seq1  CTAAGTCATGAATAACATGGCTCGTATGTTCTACCCCACTTAGAGAATAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTCATGAATAACATGGCTCGTATGTTCTACCCCACTTAGAGAATAA  581

seq1  CTCCTTATATAGTAAGACAGTAAGTGAGCCTTAACACTTCCAATCATTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTATATAGTAAGACAGTAAGTGAGCCTTAACACTTCCAATCATTGA  631

seq1  CAGTAAGAACAAGTTTGCTGTTACTTAGTTTCCTTTTCTCTTCCTTTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAGAACAAGTTTGCTGTTACTTAGTTTCCTTTTCTCTTCCTTTGGT  681

seq1  AAAATACCCTGACAAGAGTGGCTTAAGAAATGAATGATTTATTTTGGCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACCCTGACAAGAGTGGCTTAAGAAATGAATGATTTATTTTGGCTC  731

seq1  ATCATGTGAGGCTACCATTTACTACAGCAAAAATATTCCAGCAGCAAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTGAGGCTACCATTTACTACAGCAAAAATATTCCAGCAGCAAGCA  781

seq1  CTTGAAGGAGCTGAGCACATTGCACCCACCGTCCAGAAGCAGAGAAGATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAGGAGCTGAGCACATTGCACCCACCGTCCAGAAGCAGAGAAGATC  831

seq1  ATATATCTCACTCACTAGACTGCACTTCTGTTTGTGCAGTCTAGGACACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTCACTCACTAGACTGCACTTCTGTTTGTGCAGTCTAGGACACA  881

seq1  GGCCTAGAGAATGGTACCACCTACTTTTAGAATTCTTTTTCCTACTTTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGAGAATGGTACCACCTACTTTTAGAATTCTTTTTCCTACTTTAG  931

seq1  TTAACCTAATCAAGACAATCCTTACAGGCTTGGCCAGTGGCTAACTTAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTAATCAAGACAATCCTTACAGGCTTGGCCAGTGGCTAACTTAAC  981

seq1  CAAGACAATTCCTCACTGGTATACTTAGAAACTTGCCCCTAGATAATTCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAATTCCTCACTGGTATACTTAGAAACTTGCCCCTAGATAATTCT  1031

seq1  AGAAAATTGCAATGATTATAATAAATATTATCTATCACACAGGGTTTTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGCAATGATTATAATAAATATTATCTATCACACAGGGTTTTGT  1081

seq1  GAACTCATGATTTAGCTTGAGTGACCTGGAATTC  1133
      ||||||||||||||||||||||||||||||||||
seq2  GAACTCATGATTTAGCTTGAGTGACCTGGAATTC  1115