BAC Information

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BAC

Clone NameB6Ng01-311M10
Chromosome15 (Build37)
Map Location 88,809,425 - 89,001,607
singlet/doubletdoublet
Overlap geneLOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2
Upstream geneLOC100042329, LOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1
Downstream geneLOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2, Arsa, Shank3, Acr, Rabl2a, LOC676575, Syt10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311M10.bB6Ng01-311M10.g
ACCGA103411GA103412
length9701,118
definitionB6Ng01-311M10.b B6Ng01-311M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,000,640 - 89,001,607)(88,809,425 - 88,810,539)
sequence
gaattcctttcacccttagaaaccctagtgttaatttactgttactgtgt
ccattttgcagatggggaaatgaggcacagagacattaacttgcccaagg
tcacacagctagtaagtagagttgccctgttgtggatgtgcatggttttc
agaaagcagttatgcatagagtggaatatttgtgtgtgtgtgtgtgtgtt
ttgtttttccagaaagggtttctctgtggttgtcctggaactcaatctgt
agaccaagttggtcttgaactaagatcccctagcctctgcctcctgtgtg
ctgtgccacaccacttagctacacatctagttttaaagagcagatggata
ccttagactttcaatgaaaagagctgcctacttctgagcagaagagaaag
tagcatggcttgcttatgtttttcagactggggcgaatgtgcttgcttta
gaagctgggctagatgcctgcaagtgtctaaaggagtaagaggatagaga
taggtggcatcaggacagccacccagagtgactgactgtgctctctctct
cgtctcctagcgagtcctgatgccagcctaaaacagagacggagaccact
ggagccttggtgagtccatgggataagccttcggaacttgctgaaaatca
cggtgggaccctgaggctgtaccactgtatgtatatgtggcttctttgga
tgtatacctccaaaccttcagccagcataagctgactggtaacccctgag
gaaatccccaccagccaggtagcaggttcctggacctagtccaaacagga
agttcctctacttgccctccctttccaggaacatcagcatcaggaagatt
agctggcttgtgcctggcgccttccagttctctcgctgccagacaccata
gagggtcaggtgctcttttgcttcctggactggccaagtagtcaatcatc
gcccttgtttgttcatggaa
gaattccagcatgggttcccatggcagccccaaggattggcaggaatggt
cccactgcagcctttattcctgctcagtaggcagagaaaagggacatgaa
tgtgcttcatttgcctggagacattggcaccctggcaattacagcaacaa
tttctttgtgcacattgcaaaaaaggctcagcccagagtacttgggaaac
aaaacaaaacaaaacaaaaaaccaacccccccccccccagctcctttgaa
cagcagaaccccacgcagcctaggctcagccactggtttctaatcaggga
tggttggttatcttagcttgtcaaccaaacaggaaggattcggaacaatt
cacccagggctggagagatggctcagaggttaagagcactgcctgctctt
ccacagcatctgggttcagttcccagcgtccatatggtgacttacaattc
cagcacctacatggcagctcacaactgtctacaactctagttccagggga
tctaacaccctcttctatggcctctgtggacataaggtacacacagggta
cacatgcatacaggcaaagcacccatacacacaaaataaaaataaaatta
gaaaaagacatgattcacccaaactgtcccctgagacatctagaacttct
ttcaaatgtgttgaggaaactcccaaatttcctgagttcttaaatgatca
gtaaaaatcatgggagtggatccaactggattgaattctcctgtgttttc
ttttctttctttcttttttttttttctcaagggaggctcctgcatttttg
taacatttataaggaaacaaattttcagaattttaggctttgctgtaacc
cttagagcttagaaaccaccctctaggctctcaactgactcacaacccaa
aaccaagccccaaacacttccacatgggcccagcaatcctctcagtactt
taatgccatgaacatcagactatagcaggcacctaatacagagcacaacc
cgttgtccttcttgtgcgggttcctgtattacagccagccaagcttatgt
ccacatcaagtaggctcgcccatagtcactttgttgatgatcataagaat
atccctcaaaacccaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_89000640_89001607
seq2: B6Ng01-311M10.b_45_1014 (reverse)

seq1  TTCC-TGAACAAACAA-GGCCTTGAGTGACCTGCTTGGCCAGGCCCAGGA  48
      |||| ||||||||||| |||  ||| ||| || ||||||||| ||  | |
seq2  TTCCATGAACAAACAAGGGCGATGATTGA-CTACTTGGCCAGTCCAGGAA  49

seq1  GC-AAAGAGCACCTGA-CCTCTATGGTGCTCTGGCAGCGAGAGAACTGG-  95
      || ||||||||||||| ||||||||||| |||||||||||||||||||| 
seq2  GCAAAAGAGCACCTGACCCTCTATGGTG-TCTGGCAGCGAGAGAACTGGA  98

seq1  AGGCGCCAGGCAC-AGCCAGCTAATGCTTCCTGCTGCTGATGTTCCTGGA  144
      ||||||||||||| ||||||||||| ||||||| ||||||||||||||||
seq2  AGGCGCCAGGCACAAGCCAGCTAAT-CTTCCTGATGCTGATGTTCCTGGA  147

seq1  ATGGGAGGGCAAGTAGAGGAACTTCCTGTTTTGGACTAGGTCCAGGACCC  194
      | |||||||||||||||||||||||||| ||||||||||||||||||  |
seq2  AAGGGAGGGCAAGTAGAGGAACTTCCTG-TTTGGACTAGGTCCAGGA-AC  195

seq1  CTGCTTGCCTGGCTGGTGGGGATTTCCTCAGGGG-TACCAGTCAGCCTTA  243
      |||| | ||||||||||||||||||||||||||| |||||||||| ||||
seq2  CTGC-TACCTGGCTGGTGGGGATTTCCTCAGGGGTTACCAGTCAG-CTTA  243

seq1  TGCTGGCTG-AGGTTTGGAGGTATACATCC-AAGAAGCCACATATACATA  291
      ||||||||| |||||||||||||||||||| |||||||||||||||||||
seq2  TGCTGGCTGAAGGTTTGGAGGTATACATCCAAAGAAGCCACATATACATA  293

seq1  CAGTGGTACAGCCTCAGGGTCCCACCGTGATTTTCAGCAAGTTCCGAAGG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTACAGCCTCAGGGTCCCACCGTGATTTTCAGCAAGTTCCGAAGG  343

seq1  CTTATCCCATGGACTCACCAAGGCTCCAGTGGTCTCCGTCTCTGTTTTAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCCCATGGACTCACCAAGGCTCCAGTGGTCTCCGTCTCTGTTTTAG  393

seq1  GCTGGCATCAGGACTCGCTAGGAGACGAGAGAGAGAGCACAGTCAGTCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATCAGGACTCGCTAGGAGACGAGAGAGAGAGCACAGTCAGTCAC  443

seq1  TCTGGGTGGCTGTCCTGATGCCACCTATCTCTATCCTCTTACTCCTTTAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGGCTGTCCTGATGCCACCTATCTCTATCCTCTTACTCCTTTAG  493

seq1  ACACTTGCAGGCATCTAGCCCAGCTTCTAAAGCAAGCACATTCGCCCCAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGCAGGCATCTAGCCCAGCTTCTAAAGCAAGCACATTCGCCCCAG  543

seq1  TCTGAAAAACATAAGCAAGCCATGCTACTTTCTCTTCTGCTCAGAAGTAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAAACATAAGCAAGCCATGCTACTTTCTCTTCTGCTCAGAAGTAG  593

seq1  GCAGCTCTTTTCATTGAAAGTCTAAGGTATCCATCTGCTCTTTAAAACTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTTTTCATTGAAAGTCTAAGGTATCCATCTGCTCTTTAAAACTA  643

seq1  GATGTGTAGCTAAGTGGTGTGGCACAGCACACAGGAGGCAGAGGCTAGGG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTAGCTAAGTGGTGTGGCACAGCACACAGGAGGCAGAGGCTAGGG  693

seq1  GATCTTAGTTCAAGACCAACTTGGTCTACAGATTGAGTTCCAGGACAACC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGTTCAAGACCAACTTGGTCTACAGATTGAGTTCCAGGACAACC  743

seq1  ACAGAGAAACCCTTTCTGGAAAAACAAAACACACACACACACACACAAAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCTTTCTGGAAAAACAAAACACACACACACACACACAAAT  793

seq1  ATTCCACTCTATGCATAACTGCTTTCTGAAAACCATGCACATCCACAACA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCACTCTATGCATAACTGCTTTCTGAAAACCATGCACATCCACAACA  843

seq1  GGGCAACTCTACTTACTAGCTGTGTGACCTTGGGCAAGTTAATGTCTCTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTCTACTTACTAGCTGTGTGACCTTGGGCAAGTTAATGTCTCTG  893

seq1  TGCCTCATTTCCCCATCTGCAAAATGGACACAGTAACAGTAAATTAACAC  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCATTTCCCCATCTGCAAAATGGACACAGTAACAGTAAATTAACAC  943

seq1  TAGGGTTTCTAAGGGTGAAAGGAATTC  968
      |||||||||||||||||||||||||||
seq2  TAGGGTTTCTAAGGGTGAAAGGAATTC  970

seq1: chr15_88809425_88810539
seq2: B6Ng01-311M10.g_69_1186

seq1  GAATTCCAGCATGGGTTCCCATGGCAGCCCCAAGGATTGGCAGGAATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCATGGGTTCCCATGGCAGCCCCAAGGATTGGCAGGAATGGT  50

seq1  CCCACTGCAGCCTTTATTCCTGCTCAGTAGGCAGAGAAAAGGGACATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTGCAGCCTTTATTCCTGCTCAGTAGGCAGAGAAAAGGGACATGAA  100

seq1  TGTGCTTCATTTGCCTGGAGACATTGGCACCCTGGCAATTACAGCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCATTTGCCTGGAGACATTGGCACCCTGGCAATTACAGCAACAA  150

seq1  TTTCTTTGTGCACATTGCAAAAAAGGCTCAGCCCAGAGTACTTGGGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTGCACATTGCAAAAAAGGCTCAGCCCAGAGTACTTGGGAAAC  200

seq1  AAAACAAAACAAAACAAAAAACCAACCCCCCCCCCCCCAGCTCCTTTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAACAAAAAACCAACCCCCCCCCCCCCAGCTCCTTTGAA  250

seq1  CAGCAGAACCCCACGCAGCCTAGGCTCAGCCACTGGTTTCTAATCAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAACCCCACGCAGCCTAGGCTCAGCCACTGGTTTCTAATCAGGGA  300

seq1  TGGTTGGTTATCTTAGCTTGTCAACCAAACAGGAAGGATTCGGAACAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTTATCTTAGCTTGTCAACCAAACAGGAAGGATTCGGAACAATT  350

seq1  CACCCAGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGCCTGCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGGCTGGAGAGATGGCTCAGAGGTTAAGAGCACTGCCTGCTCTT  400

seq1  CCACAGCATCTGGGTTCAGTTCCCAGCGTCCATATGGTGACTTACAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCATCTGGGTTCAGTTCCCAGCGTCCATATGGTGACTTACAATTC  450

seq1  CAGCACCTACATGGCAGCTCACAACTGTCTACAACTCTAGTTCCAGGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCTACATGGCAGCTCACAACTGTCTACAACTCTAGTTCCAGGGGA  500

seq1  TCTAACACCCTCTTCTATGGCCTCTGTGGACATAAGGTACACACAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACACCCTCTTCTATGGCCTCTGTGGACATAAGGTACACACAGGGTA  550

seq1  CACATGCATACAGGCAAAGCACCCATACACACAAAATAAAAATAAAATTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCATACAGGCAAAGCACCCATACACACAAAATAAAAATAAAATTA  600

seq1  GAAAAAGAAACAATTCACCCAAACTGTCCCCTGAGACATCTAGAACTTCT  650
      |||||||| |  ||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGACATGATTCACCCAAACTGTCCCCTGAGACATCTAGAACTTCT  650

seq1  TTCAAATGTGTTGAGGAAACTCCCAAATTTCCTGAGTTCTTAAATGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGTGTTGAGGAAACTCCCAAATTTCCTGAGTTCTTAAATGATCA  700

seq1  GTAAAAATCATGGGAGTGGATCCAACTGGATTGAATTCTCCTGTGTTTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATCATGGGAGTGGATCCAACTGGATTGAATTCTCCTGTGTTTTC  750

seq1  TTTTCTTTCTTTCTTTTTTTTTTTTCTCAA-GGAGGCTCCTGCATTTTTG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTCTTTCTTTCTTTTTTTTTTTTCTCAAGGGAGGCTCCTGCATTTTTG  800

seq1  TAACATTTATAA-GAAACAAATTTTCAGAA-TTTAGGCTTTGCTGTAA-C  846
      |||||||||||| ||||||||||||||||| ||||||||||||||||| |
seq2  TAACATTTATAAGGAAACAAATTTTCAGAATTTTAGGCTTTGCTGTAACC  850

seq1  CTTAGAGCTTAGAAACCA-CCTCTAGGCTCTCAACTGACTCACAACCCAA  895
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTTAGAGCTTAGAAACCACCCTCTAGGCTCTCAACTGACTCACAACCCAA  900

seq1  AACCAAGCCCCAAACACTTCCACAT-GGCCCAGCAATCCTCTCAGTACTT  944
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACCAAGCCCCAAACACTTCCACATGGGCCCAGCAATCCTCTCAGTACTT  950

seq1  TAATGCCATGAACATCAGACTATAGCAGGCAACT-ATACAGAGCACAA-C  992
      ||||||||||||||||||||||||||||||| || ||||||||||||| |
seq2  TAATGCCATGAACATCAGACTATAGCAGGCACCTAATACAGAGCACAACC  1000

seq1  CGTTGTTCCTTCTTGTGCGGGTCCCTGTATTACAGCAAGCCCAGCTTATG  1042
      ||||| |||||||||||||||| ||||||||||||| |||| ||||||||
seq2  CGTTG-TCCTTCTTGTGCGGGTTCCTGTATTACAGCCAGCCAAGCTTATG  1049

seq1  TTCCACCATCAAGTAGGGCTCGCCCATTAGTTCACTTTG-TGATGGATCA  1091
       |||| ||||||||| |||||||||| ||| |||||||| |||| |||||
seq2  -TCCA-CATCAAGTA-GGCTCGCCCA-TAG-TCACTTTGTTGAT-GATCA  1093

seq1  TTAAGAATAT-CCTCAAAA-CCAATG  1115
       ||||||||| |||||||| ||||||
seq2  -TAAGAATATCCCTCAAAACCCAATG  1118