BAC Information

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BAC

Clone NameB6Ng01-311P14
Chromosome15 (Build37)
Map Location 40,341,535 - 40,342,676
singlet/doubletsinglet
Overlap genenone
Upstream geneRims2, Tm7sf4, Dpys, Lrp12, LOC100039130, LOC670013
Downstream geneLOC664872, Zfpm2, Ppia-ps25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311P14.bB6Ng01-311P14.g
ACCGA103559GA103560
length1,1451,170
definitionB6Ng01-311P14.b B6Ng01-311P14.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaaagtgaaaagtagagaactgtcttgcaagctaagaacacga
gtttgatctctagaaagcttgggaaaatgccaggcttggtggtgtgccct
tactattgcaatgctaggacacagggacaggatatttgatacttcctggc
tggccagattggcctgattagtaagcccaaggccaaggagaggcactgct
tcaaatgaggtgactggtgttcctgagaataacactcaaaaatttcctcc
agtttccaaacacacatgcacacatgtccatgaacaccccacacacatgc
acacatacacacacacacacacacaaatatagcttatgcttaaaattaga
aataaaaagcacagtttataattattttgtgtacaaaaatatgtgagcat
atatgaagtttgttctgagacacagaaatggggtgatcttcataaaacac
ttggaagtaataagaaaaatgtaaacaaatatatgaactaattttgcata
ttgaataaatgtttgtcagtgtgataagataaaaattatattcttatatg
ccaggcataaaagaaattattaagcaatcaagaaatcaagaaacagagtg
ttggtgctggagaaatggctcatcatttatgaaatggagcactgttccat
gaagatgtgtgagagttgactgtagttagagtattctgaagttaaattcc
aaaaggctttgatcacaaaagtgaagagcagaggcctcattaaggtcaat
ttctagcagaaagatgtctcaacaataccaatgacttagcctatactttc
aaagtatagaacaaaatcagaaccaaattacacgtcatgtcacctctccc
cctaggcattgatttatctgcttatatagtcttcatttaatcgattaaga
taaaagtcatatataaacaaaaatgtcaaggatttgcattttccaatata
taattacacatctatttctgctgggacactgaatctcggaaataagatgg
tggaaaatatttctagaaaaactactaggaataaggttcaagggtatttt
attttccctactctcatattctgaaggtaaatataataatggaaaatttc
aatgatgtgggtgaggggggatggggaactctcaagatagttaga
gaattcatgtaatagacatgttatggcttaaaagtacagcagacatccat
gacctctgtgatagctcctattatctttctaattcctggtctgtgatgat
ctttgatgggaagggtgtaacacagatttcacttttagagttgacagacc
acagtctcttgtgctctgtatgttgactagttgtaaagttctgtatcaat
aaccatctactgcaaaaactggctgctctgatggttgagagaagccctaa
tatatgaatatgaagatattagatcatttaaaagtatattaatttagcaa
aatattaggttccctctagggtctgtgacctgtccagcagtgggattggg
ctcagctaacagtataagacattagttccctcttatggaacaggctttaa
atccaataaatttggttggttactcctacaaagaatgtgctcctattgca
ttagaaagtatatattgagaaggatgttcactccagtcagaatggctaag
atcaaaaactcaggtgacagcagatgctggcgaggatgtggagaaagggg
aacactcctccattgttggtgggattgcaagcttgtacaaccactctgga
aatcagtctggcagttcctcagaaaattggacatagtactaccggaggat
cctgcaatacctctcctgggcatatatccagaagacgtcccaaccggtaa
gaagaacacatgctccactatgttcatagcagccttgtttataatagcca
gaagctggaaagaacccagatgcccctcaacagaggaatggatacacaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatattaagatacaacttgccaacggcatgaattcaga
agaacgaaaggcctcctcaactatcttaaatgaaacagcttcctctaaga
tgagaatatccatgtattcagggtaacatttgaatgcttacttttattcg
gatgaagaatagaacatatatatatggactttggagaggtgaaagttcca
aggtcaatggaatctgactaagtaggtcctgaattttcttgtaatggaag
accattcaggaattcccagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_40341535_40342676
seq2: B6Ng01-311P14.b_49_1193 (reverse)

seq1  TCTAACTTATCCTTGAGATGTCCCCCAT--CACCTCA-CCACATCAATTG  47
      |||||| ||| ||||||| || ||||||  | ||||| ||||||| ||||
seq2  TCTAAC-TAT-CTTGAGA-GTTCCCCATCCCCCCTCACCCACATC-ATTG  46

seq1  GAAAATTTTTCAATAATTATATTTTTACC-TCAGAATATGAAGAGTAAGG  96
         || ||||| || ||||||  |||||| |||||||||| |||||| ||
seq2  ---AAATTTTCCATTATTATA--TTTACCTTCAGAATATG-AGAGTAGGG  90

seq1  AAAATAAAATACCC-TGA--CTTATT-CTAGTAG-TTTTCTAGAAATATT  141
      |||||||||||||| |||  |||||| ||||||| |||||||||||||||
seq2  AAAATAAAATACCCTTGAACCTTATTCCTAGTAGTTTTTCTAGAAATATT  140

seq1  T--CA-CATCTTATTTTCGAGATTCAGTGTTCCAGCAGAAATAGATGTGT  188
      |  || |||||||||| ||||||||||||| |||||||||||||||||||
seq2  TTCCACCATCTTATTTCCGAGATTCAGTGTCCCAGCAGAAATAGATGTGT  190

seq1  AATTATATATTGGAAAATGCAAAT-CTTGACATTTTTGTTTATATATGAC  237
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AATTATATATTGGAAAATGCAAATCCTTGACATTTTTGTTTATATATGAC  240

seq1  TTTTATCTTAATCGATTAAATGAAGACTATATAAGCAGATAAATCAATGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTAATCGATTAAATGAAGACTATATAAGCAGATAAATCAATGC  290

seq1  CTAGGGGGAGAGGTGACATGACGTGTAATTTGGTTCTGATTTTGTTCTAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGGAGAGGTGACATGACGTGTAATTTGGTTCTGATTTTGTTCTAT  340

seq1  ACTTTGAAAGTATAGGCTAAGTCATTGGTATTGTTGAGACATCTTTCTGC  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAAGTATAGGCTAAGTCATTGGTATTGTTGAGACATCTTTCTGC  390

seq1  TAGAAATTGACCTTAATGAGGCCTCTGCTCTTCACTTTTGTGATCAAAGC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTGACCTTAATGAGGCCTCTGCTCTTCACTTTTGTGATCAAAGC  440

seq1  CTTTTGGAATTTAACTTCAGAATACTCTAACTACAGTCAACTCTCACACA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGAATTTAACTTCAGAATACTCTAACTACAGTCAACTCTCACACA  490

seq1  TCTTCATGGAACAGTGCTCCATTTCATAAATGATGAGCCATTTCTCCAGC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGGAACAGTGCTCCATTTCATAAATGATGAGCCATTTCTCCAGC  540

seq1  ACCAACACTCTGTTTCTTGATTTCTTGATTGCTTAATAATTTCTTTTATG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACTCTGTTTCTTGATTTCTTGATTGCTTAATAATTTCTTTTATG  590

seq1  CCTGGCATATAAGAATATAATTTTTATCTTATCACACTGACAAACATTTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCATATAAGAATATAATTTTTATCTTATCACACTGACAAACATTTA  640

seq1  TTCAATATGCAAAATTAGTTCATATATTTGTTTACATTTTTCTTATTACT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATGCAAAATTAGTTCATATATTTGTTTACATTTTTCTTATTACT  690

seq1  TCCAAGTGTTTTATGAAGATCACCCCATTTCTGTGTCTCAGAACAAACTT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGTTTTATGAAGATCACCCCATTTCTGTGTCTCAGAACAAACTT  740

seq1  CATATATGCTCACATATTTTTGTACACAAAATAATTATAAACTGTGCTTT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCTCACATATTTTTGTACACAAAATAATTATAAACTGTGCTTT  790

seq1  TTATTTCTAATTTTAAGCATAAGCTATATTTGTGTGTGTGTGTGTGTGTA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTAATTTTAAGCATAAGCTATATTTGTGTGTGTGTGTGTGTGTA  840

seq1  TGTGTGCATGTGTGTGGGGTGTTCATGGACATGTGTGCATGTGTGTTTGG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCATGTGTGTGGGGTGTTCATGGACATGTGTGCATGTGTGTTTGG  890

seq1  AAACTGGAGGAAATTTTTGAGTGTTATTCTCAGGAACACCAGTCACCTCA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGAGGAAATTTTTGAGTGTTATTCTCAGGAACACCAGTCACCTCA  940

seq1  TTTGAAGCAGTGCCTCTCCTTGGCCTTGGGCTTACTAATCAGGCCAATCT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCAGTGCCTCTCCTTGGCCTTGGGCTTACTAATCAGGCCAATCT  990

seq1  GGCCAGCCAGGAAGTATCAAATATCCTGTCCCTGTGTCCTAGCATTGCAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCAGGAAGTATCAAATATCCTGTCCCTGTGTCCTAGCATTGCAA  1040

seq1  TAGTAAGGGCACACCACCAAGCCTGGCATTTTCCCAAGCTTTCTAGAGAT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGGGCACACCACCAAGCCTGGCATTTTCCCAAGCTTTCTAGAGAT  1090

seq1  CAAACTCGTGTTCTTAGCTTGCAAGACAGTTCTCTACTTTTCACTTTTTG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCGTGTTCTTAGCTTGCAAGACAGTTCTCTACTTTTCACTTTTTG  1140

seq1  AATTC  1142
      |||||
seq2  AATTC  1145