BAC Information

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BAC

Clone NameB6Ng01-312A02
Chromosome15 (Build37)
Map Location 16,619,406 - 16,620,561
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream geneCdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312A02.bB6Ng01-312A02.g
ACCGA103583GA103584
length1,1481,169
definitionB6Ng01-312A02.b B6Ng01-312A02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacagatactccaagttatgcacataaacctaaaacttcaatga
taagatccacatcagatggggaaaccttgcagtatttgttattttcatta
cagttctttcattccaaataatgtttacagatttatctattaatgtgaaa
ttttcttaataccatgtttctttacaaattaataacattaaggtgtgtct
atgtacctcattttcattacccatttgtctcttgacgaccatagtggaaa
gcttagtttgttattgttttatggtgtggattcattctctctccgtctct
ctctctctctctctctcttttcttttaaagttcttgaatgacctaatccc
tctaccttgtactccatccctaattctctgctccctatgttgtctatttt
aatgttgaagctttttctttaggctattactatattaacatattgacttc
taaaattttttcagcctaagttttctttttaagatgatttactatttaaa
acagcttccattctctacccacccaaatttaagctattataaaacaaaca
aacaaaaacccacatcaaaacctcgccaaagaaaaaaaccctactccccc
cccaaatcccactaatctttaatcaaataacagtcaacaaaacaaacaaa
caaacaaataactgtggcatccattgtatgttggccactagtcctcatga
acctgtgtcctcgagtagttgatataccaatctattaaagagaagtgatt
tcatcttccaaaaggaataagtaacacttcaactgttaacctttactctc
gttactgcgttttcattctttgagtcattcattcattcattcattcattc
cccactcatttttgtaagatatataacaaaaatataataaaataaaaaat
gatcacactgaagttgaagaaggtaaaaagcacaggagaagcacaagaat
cagagacccattcatttgcacacttaagaatcacatgaaatacactaact
agaagccatccatattcaatagagaccgggtatagtcttgaagctctgtg
ctagctacttcagtctgtggaaccatatgagctttgctttcagtttgtga
atcatagaccttgtaattttgtcatctcatctctctgttttcaccttt
gaattctcacctgaggaatactgaatggcagagaagctcctgaaaaaatg
ttcaacacccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcagttgacagc
agatgctgacgaggatgtggagaaagtgggacatgcctctattgttggtg
agattgcaagcttgtacaaccactctggaaatcaatctggctgttcctca
gaaaattggacatagtactactggaggatcctgaaatatctctcctgggc
atatatcctgaagatgtctctaccagtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatgatacagaaaatgtggtacatatacacaatgg
agtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaa
tgtatggacctggagggcatcatcctgagtgaggtaacccaatcacaaag
gaactcacacaatatgtactcactgataagtggatattaccccagaaact
taggatacccaggatataagatacaatttgctaattgcacgaaacttaag
aagaatgaagaacaaagtgtggatactttgccccttcttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgtgacga
aaggatggacaatctagagactctatatctggggatccatcccataatca
gcttcaactcaaaaggacttaagattttgctgaaaggacccagatacagc
cgtctcttgtgagactaggccggggcctagcaaacacagatgtggatgct
cacagtcatctattggatggatcacagggtccccaatggaggagctagag
aaagtacccaaggagctaaagggatttgcaaccctattaggtggaacaac
attatgactaacagtaccccagagcttctttaactctagctgcatatgta
tcaaagatgcctagtccgcatcactgacagagagccattgaactgcaagt
tatatgccccagttacagtaccggacgactggtctaagtgaactggatgc
ggttatgggatatggctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_16619406_16620561
seq2: B6Ng01-312A02.b_47_1194

seq1  GAATTCCACAGATACTCCAAGTTATGCACATAAACCTAAAACTTCAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGATACTCCAAGTTATGCACATAAACCTAAAACTTCAATGA  50

seq1  TAAGATCCACATCAGATGGGGAAACCTTGCAGTATTTGTTATTTTCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCCACATCAGATGGGGAAACCTTGCAGTATTTGTTATTTTCATTA  100

seq1  CAGTTCTTTCATTCCAAATAATGTTTACAGATTTATCTATTAATGTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTTCATTCCAAATAATGTTTACAGATTTATCTATTAATGTGAAA  150

seq1  TTTTCTTAATACCATGTTTCTTTACAAATTAATAACATTAAGGTGTGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTAATACCATGTTTCTTTACAAATTAATAACATTAAGGTGTGTCT  200

seq1  ATGTACCTCATTTTCATTACCCATTTGTCTCTTGACGACCATAGTGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTCATTTTCATTACCCATTTGTCTCTTGACGACCATAGTGGAAA  250

seq1  GCTTAGTTTGTTATTGTTTTATGGTGTGGATTCATTCTCTCTCCGTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTTTGTTATTGTTTTATGGTGTGGATTCATTCTCTCTCCGTCTCT  300

seq1  CTCTCTCTCTCTCTCTCTTTTCTTTTAAAGTTCTTGAATGACCTAATCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTTTTCTTTTAAAGTTCTTGAATGACCTAATCCC  350

seq1  TCTACCTTGTACTCCATCCCTAATTCTCTGCTCCCTATGTTGTCTATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTGTACTCCATCCCTAATTCTCTGCTCCCTATGTTGTCTATTTT  400

seq1  AATGTTGAAGCTTTTTCTTTAGGCTATTACTATATTAACATATTGACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGAAGCTTTTTCTTTAGGCTATTACTATATTAACATATTGACTTC  450

seq1  TAAAATTTTTTCAGCCTAAGTTTTCTTTTTAAGATGATTTACTATTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTTTTTCAGCCTAAGTTTTCTTTTTAAGATGATTTACTATTTAAA  500

seq1  ACAGCTTCCATTCTCTACCCACCCAAATTTAAGCTATTATAAAACAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTCCATTCTCTACCCACCCAAATTTAAGCTATTATAAAACAAACA  550

seq1  AACAAAAACCCACATCAAAACCTCGCCAAAGAAAAAAACCCTACTCCCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACCCACATCAAAACCTCGCCAAAGAAAAAAACCCTACTCCCCC  600

seq1  CCCAAATCCCACTAATCTTTAATCAAATAACAGTCAACAAAACAAACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATCCCACTAATCTTTAATCAAATAACAGTCAACAAAACAAACAAA  650

seq1  CAAACAAATAACTGTGGCATCCATTGTATGTTGGCCACTAGTCCTCATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATAACTGTGGCATCCATTGTATGTTGGCCACTAGTCCTCATGA  700

seq1  ACCTGTGTCCTCGAGTAGTTGATATACCAATCTATTAAAGAGAAGTGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTCCTCGAGTAGTTGATATACCAATCTATTAAAGAGAAGTGATT  750

seq1  TCATCTTCCAAAAGGAATAAGTAACACTTCAACTGTTAACCTTTACTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTTCCAAAAGGAATAAGTAACACTTCAACTGTTAACCTTTACTCTC  800

seq1  GTTACTGCGTTTTCATTCTTTGAGTCATTCATTCATTCATTCATTCATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGCGTTTTCATTCTTTGAGTCATTCATTCATTCATTCATTCATTC  850

seq1  CCCACTCATTTTTGTAAGATATATAACAAAAATATAATAAAATAAAAAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCATTTTTGTAAGATATATAACAAAAATATAATAAAATAAAAAAT  900

seq1  GATCACACTGAAGTTGAAGAAGGTAAAAAGCACAGGAGAAGGCACAAGAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GATCACACTGAAGTTGAAGAAGGTAAAAAGCACAGGAGAA-GCACAAGAA  949

seq1  TCAGAGACCCATTCATTTGCACACTTAAGAATCACATGAAATACACTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TCAGAGACCCATTCATTTGCACACTTAAGAATCACATGAAATACACT-AA  998

seq1  CTAGAAGCCATCCCATATTC-ATAGAGGACCGGGTATAGTCTTGAAGGCT  1049
      ||||||||||| |||||||| ||||| ||||||||||||||||||| |||
seq2  CTAGAAGCCAT-CCATATTCAATAGA-GACCGGGTATAGTCTTGAA-GCT  1045

seq1  CTGTGCTAGCTACTTCAGTCTGTGGAACCATATGAGCTTTGC-TTCAGTT  1098
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CTGTGCTAGCTACTTCAGTCTGTGGAACCATATGAGCTTTGCTTTCAGTT  1095

seq1  TGTGAAATCATAGGACCTTGTAATTTTGGTCATCTCCATCCTCTCTGTTT  1148
      |||| ||||||| |||||||||||||| ||||||| ||| ||||||||||
seq2  TGTG-AATCATA-GACCTTGTAATTTT-GTCATCT-CAT-CTCTCTGTTT  1140

seq1  TCACTTTT  1156
      |||| |||
seq2  TCACCTTT  1148