BAC Information

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BAC

Clone NameB6Ng01-312J06
Chromosome6 (Build37)15 (Build37)
Map Location 72,793,982 - 72,794,13496,334,028 - 96,334,950
singlet/doubletsingletsinglet
Overlap geneKcmf1
Upstream geneImmt, Ptcd3, Rpo1-4, LOC668057, St3gal5, Atoh8, Sftpb, Usp39, 0610030E20Rik, Tmem150, 2500002L14Rik, Vamp5, Vamp8, Ggcx, Mat2a, Sh2d6, Capg, Rbed1, Retsat, Tgoln1, LOC100038890, Tcf3
Downstream geneTmsb10, Dnahc6, Suclg1, Olfr210-ps1, 4931417E11Rik, LOC100043338
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-312J06.bB6Ng01-312J06.g
ACCGA104013GA104014
length903925
definitionB6Ng01-312J06.b B6Ng01-312J06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(72,793,982 - 72,794,134)(96,334,028 - 96,334,950)
sequence
gaattcctgattttatttatttatttttaaatttttcactgtgtaaatgt
acctgtcttattattcttcattcacctgttgtggacacctgggctatcat
gagcagatcagaagtcgcatcaatttgcatttccttgatagctaagaatg
gtgaacatttctttgagtggtactcggccatctgtgttttgggttttgtt
ttgaaaacttctctgtttacttttgtactccatatttaattgggttattt
gtcttcttgatgcctaggttgttttttttttcctgttttgttttgttttt
agttctctatataagttacatattaactctctcttgcatgtgtacttgat
aaagatcatttccctttttttgtttttttttctttttttgtttgtttgtt
tttctttattttattttatttttattttgtttgtttttcgagacagggtt
tctctgtatagccctggctgtcctggaactcactttgtagaccaggatgg
cctcaaactcagaaatccacctgcctctgctgggattaaaggcatgcgcc
accacgtctggctgatcatttcccattttataacctctttatccaaatga
cagcatcctttgccttacagagcttttggttttcataaggtcccgtgtat
taattgtccttagggcccgagctaccagcgtcttgatcagaacgtctttc
cgtgggccagtgagttcaacactattctccatgttctctcctgtcagacc
ctgtgtatgtggccttaggggaaagttctttgacctatttggcaatggct
gttgcgtgaggtgggtaagtgtggatctatttacattcttctatatatgt
tctatttgccatcctccagtttgacccctaccattttgttgtagaatgct
gtg
gaattcatgagggagttaaaagaatgatgtttagccgggtatgacgacgc
acacttacaattcctgatgtggaagaaggaaggaggatctcaaggtgggg
ctaccaagagctatgtggggtctctcctcaggcacaaaataattctctcc
tgactctgcttccttactacatgttctgtactcgccatgttaagtgcacc
ctgcccacaagcattcaatatcttccagtcccacatacatactggttatg
gcttgaataggaaatgcccctttcccaccccccaattcatgtgtttaaag
ctcagtccctagatggttgtcattacttttggaggtgcccaaggatttca
gaggttgggcctattcagaaaaaaaaagttaactagggggcaagagcatg
tgtattttatcttggtctatatttttttctttaggcctattccttactcc
tttccatcctctctctctgtctctctgtctctgtctctgtctgtgtgtgt
ctctctctgtctctctgcctctctctgtttgtgtctctttctctgtctct
ctgtctctctgcctctctgtctctctctgtctctctctgtctctatctct
tgttctctgcttcctggccactatgaagtgacaaacttcattttgccctg
ccctctctggcatgaagctctgcattacttggtagcagattatggactga
ggcctctgatactttgagccaagataaatcttttcgtcttgtaagctgct
ttgtcagatattttgttataccaatggaatttccaactagagaacagact
atgtgaatcatctgaatacacattatatttttaaaggctctcttctcttc
ttcttcttctcttctcttctcttctctcttctctctctctcttcttcttc
ttctcttctctctcctcctcctcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_72793982_72794134
seq2: B6Ng01-312J06.b_426_598 (reverse)

seq1  GTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGG  50
      |||||||| || |||||||||||||           ||||||||||| ||
seq2  GTGGTGGCGCATGCCTTTAATCCCA-----------GCAGAGGCAGGTGG  39

seq1  ATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGC  100
      ||||||||||| ||||||| ||||||||||||||||||||||||||||||
seq2  ATTTCTGAGTTTGAGGCCATCCTGGTCTACAAAGTGAGTTCCAGGACAGC  89

seq1  CAAGGCTACACAGAGAAACCCTGTCTTGAAAAAC----------------  134
      || ||||| ||||||||||||||||| |||||||                
seq2  CAGGGCTATACAGAGAAACCCTGTCTCGAAAAACAAACAAAATAAAAATA  139

seq1  ---------------AAACAAACAAACAAAAAAA  153
                     |||||||||||||||||||
seq2  AAATAAAATAAAGAAAAACAAACAAACAAAAAAA  173

seq1: chr15_96334028_96334950
seq2: B6Ng01-312J06.g_68_992

seq1  GAATTCATGAGGGAGTTAAAAGAATGATGTTTAGCCGGGTATGACGACGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGGGAGTTAAAAGAATGATGTTTAGCCGGGTATGACGACGC  50

seq1  ACACTTACAATTCCTGATGTGGAAGAAGGAAGGAGGATCTCAAGGTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACAATTCCTGATGTGGAAGAAGGAAGGAGGATCTCAAGGTGGGG  100

seq1  CTACCAAGAGCTATGTGGGGTCTCTCCTCAGGCACAAAATAATTCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGAGCTATGTGGGGTCTCTCCTCAGGCACAAAATAATTCTCTCC  150

seq1  TGACTCTGCTTCCTTACTACATGTTCTGTACTCGCCATGTTAAGTGCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTGCTTCCTTACTACATGTTCTGTACTCGCCATGTTAAGTGCACC  200

seq1  CTGCCCACAAGCATTCAATATCTTCCAGTCCCACATACATACTGGTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCACAAGCATTCAATATCTTCCAGTCCCACATACATACTGGTTATG  250

seq1  GCTTGAATAGGAAATGCCCCTTTCCCACCCCCCAATTCATGTGTTTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAATAGGAAATGCCCCTTTCCCACCCCCCAATTCATGTGTTTAAAG  300

seq1  CTCAGTCCCTAGATGGTTGTCATTACTTTTGGAGGTGCCCAAGGATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTCCCTAGATGGTTGTCATTACTTTTGGAGGTGCCCAAGGATTTCA  350

seq1  GAGGTTGGGCCTATTCAGAAAAAAAAAGTTAACTAGGGGGCAAGAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTGGGCCTATTCAGAAAAAAAAAGTTAACTAGGGGGCAAGAGCATG  400

seq1  TGTATTTTATCTTGGTCTATATTTTTTTCTTTAGGCCTATTCCTTACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTATCTTGGTCTATATTTTTTTCTTTAGGCCTATTCCTTACTCC  450

seq1  TTTCCATCCTCTCTCTCTGTCTCTCTGTCTCTGTCTCTGTCTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCCTCTCTCTCTGTCTCTCTGTCTCTGTCTCTGTCTGTGTGTGT  500

seq1  CTCTCTCTGTCTCTCTGCCTCTCTCTGTTTGTGTCTCTTTCTCTGTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGTCTCTCTGCCTCTCTCTGTTTGTGTCTCTTTCTCTGTCTCT  550

seq1  CTGTCTCTCTGCCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTCTGCCTCTCTGTCTCTCTCTGTCTCTCTCTGTCTCTATCTCT  600

seq1  TGTTCTCTGCTTCCTGGCCACTATGAAGTGACAAACTTCATTTTGCCCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCTGCTTCCTGGCCACTATGAAGTGACAAACTTCATTTTGCCCTG  650

seq1  CCCTCTCTGGCATGAAGCTCTGCATTACTTGGTAGCAGATTATGGACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTGGCATGAAGCTCTGCATTACTTGGTAGCAGATTATGGACTGA  700

seq1  GGCCTCTGATACTTTGAGCCAAGATAAATCTTTTCGTCTTGTAAGCTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTGATACTTTGAGCCAAGATAAATCTTTTCGTCTTGTAAGCTGCT  750

seq1  TTGTCAGATATTTTGTTATACCAATGGAATTTCCAACTAGAGAACAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGATATTTTGTTATACCAATGGAATTTCCAACTAGAGAACAGACT  800

seq1  ATGTGAATCATCTGAATACACATTATATTTTT-AAGGCTCTCTTCTTCTT  849
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  ATGTGAATCATCTGAATACACATTATATTTTTAAAGGCTCTCTTC-TCTT  849

seq1  CTTCTTCTTCTTCTTCTTCTTCTTCTTCT-TCTTCT---TCT-TCTTCTT  894
      |||||||||| ||||| ||||| |||||| ||||||   ||| |||||||
seq2  CTTCTTCTTC-TCTTC-TCTTC-TCTTCTCTCTTCTCTCTCTCTCTTCTT  896

seq1  CTTCTTCTTCTTCT-TCTCCTCCTTCTCCT  923
      ||||||| |||||| ||||||||| |||||
seq2  CTTCTTC-TCTTCTCTCTCCTCCTCCTCCT  925