BAC Information

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BAC

Clone NameB6Ng01-314A08
Chromosome15 (Build37)
Map Location 18,800,562 - 18,860,535
singlet/doubletdoublet
Overlap geneCdh10
Upstream geneLOC100040162, LOC666835, LOC666839
Downstream geneEG666857, EG666875, LOC621884, LOC100040265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314A08.bB6Ng01-314A08.g
ACCGA105075GA105076
length9921,132
definitionB6Ng01-314A08.b B6Ng01-314A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,800,562 - 18,801,336)(18,859,395 - 18,860,535)
sequence
gaattcaccagttacaaagcaccaaatcctttattcatcagaatcactga
taaaagtacatttggaaattgagggctacatgaacactcctatctatatt
ctgtctacacacttggaaagtcataccctgaacctcatgcccaaaatgca
gtgttagtctaattaaggtgcatgttgtgaattatggcaatcaagaggca
gaaatttaaaaaaaaaatcttcaaaaattttgcttagtgaaattattatt
tgcttgtcaattttctttcataccaagtgtactgggtaattttgtgtcag
cgtgacagaagctaatttatcacagagggggaagagtcacagtaagatta
tgtctctttgagctttactaaagtttctttaatgaatgtagatgcccttg
tatttggagcgtagatattcagaattgagagttcctcttggaggatttta
tctttgatgagaatgaagtgcccctccttgtcttttttgatgactttggg
ttggaagtcaatcttatcagatattaggatggctactccagcagtttctt
cagaccatttgcttggaaaattgttttccagcctttcattctgaggtagt
gtctatctttttctctgagatgagtttcctgtaagcagcaaaatgttggg
tcttgtttgtgtagccagtttgttagtctatgtctttttattggggagtt
gagacccttgatattaagagatattaagaaaaagtaattgttggttcctc
ttattttgttgttaaatttggcattctacttttgtggctgtcttctttta
ggtttgttgagggattaccttcttgttttttctagggcgaggttcccgac
cttgtattggttttttttctgttattatcctttgaaagggctggattcgt
ggaaagggtaatgtgtgaatttgggttttgttgtggaatactttagtttc
tccatctatggtaaattgagagtttgggctgggtatagtagc

gaattcctgttctgaatttgtttgatgataaacagcaatgtgaaagtgta
agctgaataaaccctgtcctcctcaacttgcttcttggtcatggtgtttc
actgcagcaatagaaaccttagactgatatataatattttgatatagttg
taataaaatgtaaaatctcacaccaatatcctctgttgctatgcaagact
atagaaagaaccatagtttttcctccttatttaagtaaaagagaaaacta
aatttgataatattcttatgtatgtatttatttgatcaattttcctgttg
gggaaaaaaaaaactaccttccagaacttctgctctcaagggatgccatt
ttatgtctacatttgagtctctcatactcaggccttttgtacacaacaca
gccttcattttactcaccacctactctcacacagagccactaggcagaca
gcacatatgttctttttttttttttttggttacagttcatcttattgcac
ttgtacaatgtcttcccaccctgaaaccctgaacaactttgcatttgcta
aagatgcttctttacccaaatttgggtccaacaggttccttggtaaaaga
aatagtctttaaaaatcttcaacatgagtgtctcatttagtctatcttta
acaaattaggaactgaagtgtttgtagaaatggacatgttagggggcatc
tggaattaagcaagcaagcaagcaagaaaggtattgctcaaaacctaaca
aatataccttgacatggatttgaagaatcctcattctttccctgaaaccc
cacccccaagaaaaaaaacaaagaagaaaaggaaggaaagaagaaaaaaa
aggaaaaaaatgaaatgagaacgttactgttattcatgcatttaatctat
atttcgagaagaaaaaaaaatctagaaacagaggatgttgttaaatcatt
catttctgtcttagtcattaaaatccaataatatttcagtattttaggga
tacattttggctggaggcagatccacactgaaataggaaagggttggtgg
catagtcaaagactgggaaagatgcaggagggggcatgcatgagctgaac
cgtccagccagcatacctcactgtcgaatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_18800562_18801336
seq2: B6Ng01-314A08.b_46_820

seq1  GAATTCACCAGTTACAAAGCACCAAATCCTTTATTCATCAGAATCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCAGTTACAAAGCACCAAATCCTTTATTCATCAGAATCACTGA  50

seq1  TAAAAGTACATTTGGAAATTGAGGGCTACATGAACACTCCTATCTATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTACATTTGGAAATTGAGGGCTACATGAACACTCCTATCTATATT  100

seq1  CTGTCTACACACTTGGAAAGTCATACCCTGAACCTCATGCCCAAAATGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTACACACTTGGAAAGTCATACCCTGAACCTCATGCCCAAAATGCA  150

seq1  GTGTTAGTCTAATTAAGGTGCATGTTGTGAATTATGGCAATCAAGAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTCTAATTAAGGTGCATGTTGTGAATTATGGCAATCAAGAGGCA  200

seq1  GAAATTTAAAAAAAAAATCTTCAAAAATTTTGCTTAGTGAAATTATTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTAAAAAAAAAATCTTCAAAAATTTTGCTTAGTGAAATTATTATT  250

seq1  TGCTTGTCAATTTTCTTTCATACCAAGTGTACTGGGTAATTTTGTGTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCAATTTTCTTTCATACCAAGTGTACTGGGTAATTTTGTGTCAG  300

seq1  CGTGACAGAAGCTAATTTATCACAGAGGGGGAAGAGTCACAGTAAGATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACAGAAGCTAATTTATCACAGAGGGGGAAGAGTCACAGTAAGATTA  350

seq1  TGTCTCTTTGAGCTTTACTAAAGTTTCTTTAATGAATGTAGATGCCCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTTGAGCTTTACTAAAGTTTCTTTAATGAATGTAGATGCCCTTG  400

seq1  TATTTGGAGCGTAGATATTCAGAATTGAGAGTTCCTCTTGGAGGATTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGAGCGTAGATATTCAGAATTGAGAGTTCCTCTTGGAGGATTTTA  450

seq1  TCTTTGATGAGAATGAAGTGCCCCTCCTTGTCTTTTTTGATGACTTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGATGAGAATGAAGTGCCCCTCCTTGTCTTTTTTGATGACTTTGGG  500

seq1  TTGGAAGTCAATCTTATCAGATATTAGGATGGCTACTCCAGCAGTTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGTCAATCTTATCAGATATTAGGATGGCTACTCCAGCAGTTTCTT  550

seq1  CAGACCATTTGCTTGGAAAATTGTTTTCCAGCCTTTCATTCTGAGGTAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCATTTGCTTGGAAAATTGTTTTCCAGCCTTTCATTCTGAGGTAGT  600

seq1  GTCTATCTTTTTCTCTGAGATGAGTTTCCTGTAAGCAGCAAAATGTTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTTTTTCTCTGAGATGAGTTTCCTGTAAGCAGCAAAATGTTGGG  650

seq1  TCTTGTTTGTGTAGCCAGTTTGTTAGTCTATGTCTTTTTATTGGGGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTGTGTAGCCAGTTTGTTAGTCTATGTCTTTTTATTGGGGAGTT  700

seq1  GAGACCCTTGATATTAAGAGATATTAAGAAAAAGTAATTGTTGGTTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCCTTGATATTAAGAGATATTAAGAAAAAGTAATTGTTGGTTCCTC  750

seq1  TTATTTTGTTGTTAAATTTGGCATT  775
      |||||||||||||||||||||||||
seq2  TTATTTTGTTGTTAAATTTGGCATT  775


seq1: chr15_18859395_18860535
seq2: B6Ng01-314A08.g_67_1198 (reverse)

seq1  TCCATTTGACAGTGAGGTAATGCT-GCTGTGGCTGTCTCTGCCTCCTCTC  49
      |||||| ||||||||||| ||||| |||| | | || || | ||| |  |
seq2  TCCATTCGACAGTGAGGT-ATGCTGGCTG-GACGGT-TCAG-CTCAT-GC  45

seq1  ATTCCCCCTCTTTCCATTCTTTTCCTGTCTTTTAACTAATGCCA-CAACC  98
      || ||||||| | |   ||||| || ||| ||| ||| |||||| |||||
seq2  ATGCCCCCTCCTGC--ATCTTTCCCAGTC-TTTGACT-ATGCCACCAACC  91

seq1  --TTTCTATTTCAGTGTGATTCTGGCCTCAG-CAAAATGTATCCCTAAAA  145
        || |||||||||||||  |||| |  ||| ||||||||||||||||||
seq2  CTTTCCTATTTCAGTGTGGATCTGCCTCCAGCCAAAATGTATCCCTAAAA  141

seq1  TACTGAAATATTATTGGATTTTAATGACTAAGACAGAAATTGAATGATTT  195
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TACTGAAATATTATTGGATTTTAATGACTAAGACAGAAA-TGAATGATTT  190

seq1  AACAACATCCTCTGTTTTCTTAGA-TTTTTTTTCTTCTCGAAATATAGAT  244
      |||||||||||||||||   |||| |||||||||||||||||||||||||
seq2  AACAACATCCTCTGTTT--CTAGATTTTTTTTTCTTCTCGAAATATAGAT  238

seq1  TAAATTGCATGAATAACAGTAACGTTCTCATTTTCATTTTTTTCTTTTTT  294
      |||| ||||||||||||||||||||||||| ||||||||||||| |||||
seq2  TAAA-TGCATGAATAACAGTAACGTTCTCA-TTTCATTTTTTTCCTTTTT  286

seq1  TTCTTTCTTTCCTTTCCTTTTCTTCTTTGTTTTTTTTCTTGGGGGTGGGG  344
      ||  |||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTTCC-TTCCTTTTCTTCTTTGTTTTTTTTCTTGGGGGTGGGG  335

seq1  TTTCAGGGAAAGAATGAGGATTCTTCAAATCCATGTCAAGGTATATTTGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGGAAAGAATGAGGATTCTTCAAATCCATGTCAAGGTATATTTGT  385

seq1  TAGGTTTTGAGCAATACCTTTCTTGCTTGCTTGCTTGCTTAATTCCAGAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTGAGCAATACCTTTCTTGCTTGCTTGCTTGCTTAATTCCAGAT  435

seq1  GCCCCCTAACATGTCCATTTCTACAAACACTTCAGTTCCTAATTTGTTAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCTAACATGTCCATTTCTACAAACACTTCAGTTCCTAATTTGTTAA  485

seq1  AGATAGACTAAATGAGACACTCATGTTGAAGATTTTTAAAGACTATTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGACTAAATGAGACACTCATGTTGAAGATTTTTAAAGACTATTTCT  535

seq1  TTTACCAAGGAACCTGTTGGACCCAAATTTGGGTAAAGAAGCATCTTTAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGGAACCTGTTGGACCCAAATTTGGGTAAAGAAGCATCTTTAG  585

seq1  CAAATGCAAAGTTGTTCAGGGTTTCAGGGTGGGAAGACATTGTACAAGTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCAAAGTTGTTCAGGGTTTCAGGGTGGGAAGACATTGTACAAGTG  635

seq1  CAATAAGATGAACTGTAACCAAAAAAAAAAAAAAAGAACATATGTGCTGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGATGAACTGTAACCAAAAAAAAAAAAAAAGAACATATGTGCTGT  685

seq1  CTGCCTAGTGGCTCTGTGTGAGAGTAGGTGGTGAGTAAAATGAAGGCTGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAGTGGCTCTGTGTGAGAGTAGGTGGTGAGTAAAATGAAGGCTGT  735

seq1  GTTGTGTACAAAAGGCCTGAGTATGAGAGACTCAAATGTAGACATAAAAT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTACAAAAGGCCTGAGTATGAGAGACTCAAATGTAGACATAAAAT  785

seq1  GGCATCCCTTGAGAGCAGAAGTTCTGGAAGGTAGTTTTTTTTTTCCCCAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCCTTGAGAGCAGAAGTTCTGGAAGGTAGTTTTTTTTTTCCCCAA  835

seq1  CAGGAAAATTGATCAAATAAATACATACATAAGAATATTATCAAATTTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAATTGATCAAATAAATACATACATAAGAATATTATCAAATTTAG  885

seq1  TTTTCTCTTTTACTTAAATAAGGAGGAAAAACTATGGTTCTTTCTATAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTTTTACTTAAATAAGGAGGAAAAACTATGGTTCTTTCTATAGT  935

seq1  CTTGCATAGCAACAGAGGATATTGGTGTGAGATTTTACATTTTATTACAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATAGCAACAGAGGATATTGGTGTGAGATTTTACATTTTATTACAA  985

seq1  CTATATCAAAATATTATATATCAGTCTAAGGTTTCTATTGCTGCAGTGAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCAAAATATTATATATCAGTCTAAGGTTTCTATTGCTGCAGTGAA  1035

seq1  ACACCATGACCAAGAAGCAAGTTGAGGAGGACAGGGTTTATTCAGCTTAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATGACCAAGAAGCAAGTTGAGGAGGACAGGGTTTATTCAGCTTAC  1085

seq1  ACTTTCACATTGCTGTTTATCATCAAACAAATTCAGAACAGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCACATTGCTGTTTATCATCAAACAAATTCAGAACAGGAATTC  1132


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