BAC Information

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BAC

Clone NameB6Ng01-314G15
Chromosome15 (Build37)
Map Location 102,524,511 - 102,727,610
singlet/doubletdoublet
Overlap geneCalcoco1, LOC637762, LOC100043050
Upstream geneKrt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2
Downstream geneHoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1, Cbx5, Hnrpa1, Nfe2, Copz1, Gpr84, Zfp385, Itga5, 1700006H03Rik, BC048502, LOC668321, Nckap1l, Pde1b, Ppp1r1a, Glycam1, LOC668327, LOC100043633
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-314G15.bB6Ng01-314G15.g
ACCGA105358GA105359
length1,0951,009
definitionB6Ng01-314G15.b B6Ng01-314G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,726,509 - 102,727,610)(102,524,511 - 102,525,499)
sequence
gaattcactctgtaaaccaactgactttgaactcaaagacatctacctgc
ctctgcctcctaaatgctgggattaaagccaagcaccaccatgttcagct
ttgtttttgaaacaaggtctttctatacaacccttggctgatctggaact
cacagatatcttcctgcctcttcttcctagatgctaggattacaacctgt
atgccaccatgcctggttatgtccaaggagatttcatctaaactggaagg
tgagcaagggttctagaagacgctcagttcaccttaagacacatttacca
actaactttgtgcatgtgtgcatgcaaactccactcccagtgtgcatgct
catacccacagttccattaggaactgaattatgtatgaattttgttatta
tgtatacattcttgtacaactaaaggcacaactatatgttagtcatacaa
gaggcacactataaattagtgttgttctaagtgccctacatgcaccacct
tatttaaatagtcttagaaaccctacagggaagtattattatcatccttt
ctaggaccgaaggaatggagctaaagagaaatcaagtggttttctcagga
ctagggtgatggtagagatagcatgtaagaagaaaatcatgttggaagta
caccaaactgcctcagacatgttaagcaggaagaagggttatttctggtt
tgtttgattttgtttctgtttctatcttagtgctgggattgaatccagat
ttccagacaggctcagtaaatgatccagccctgagctacactcccaaccc
aagtttttcacgctgtaaatcacaagattatcatttttataggataacat
ggtcagatatgtcagccattgcatgtggttcacacacacacacacaaaac
cccagaaaataaaacaaatgcacccaaaatgataacatcaaaactccgat
ggctgcagtttccttttaaacttatcagtcttctgtgtgctgatcctgga
tgctgttattcagaacagaagagtggaagataaacacctaattgcttccg
acactacactggcagtcactgtagaagaaaggtccttggcaaaga
cccaataacgcagaagtagtgcagatgtacagatttttggcagtttccgc
atctccttgaactgtcaggagtttgccctttgctttaatgctgtcactat
tcctacccctgatcattcttcctcgtccaccccaggggtggcttctcgcc
atgtgaaatccctcactcacttagccactgttcttaaaaccccctctatg
gcttcagctctcccaacttccaacagtcccctgcttgctactcaaaatcc
aggcagttctcacaacaatccagtttaggagggagttagagggggagacg
acaccctcccctaaaaaaaaaaaaaaaaaaaaaaaagcctccatcctctt
tcctcatccattttctccgagggagccgagtttgacagcgaattcattcc
gagcggggagggtgatttattcttcaaatataccgacaagtgcgggcatg
atggagcccattaaaatgttgggagattgtttttatgattgaagtctgta
ttactccaaccataaagaaagagagcaaggagtcattagcattttcatga
tggtgtatttctgcttgtctccgcgccatcactcatctttactgcccgtc
cctttgctctcgctctgctacaacgaggagagactgaagcctgagctggg
gttgggggctgcgggaggcgggagccagagatcccccccgacgctctgcc
cttcacgcccaaatcctcacccctctctgggacgcagatacagggggtga
gagggacacagaggatatgccttccacttctttagccagctcctccttgc
ccccgcacccccccccccaggtgggcaacagggatgtcctgtccaaatgg
ttctttgaagtcctggaaggggttgggccttgcagataggcctctttttc
tattggcttcactcttcctgacctacacaccccttggaagctcctcccag
aattcatctctaatggggagtgaatatagggagttcatggtctaagtgcc
atgacttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_102726509_102727610
seq2: B6Ng01-314G15.b_44_1138 (reverse)

seq1  TCTTTCCCAAGGAGCCTTTCTTTCTACAGTGAATTTCAAGTGTAGTGTCG  50
      ||||| ||||||| |||||| |||||||||| | | | ||||||||||||
seq2  TCTTTGCCAAGGA-CCTTTC-TTCTACAGTG-ACTGCCAGTGTAGTGTCG  47

seq1  GGAAGGCATTTAGGTGTTTATC-TCCACTCTTCTG-TCTGAAATAACAGC  98
      |  | ||| ||||||||||||| |||||||||||| |||| |||||||||
seq2  G--AAGCAATTAGGTGTTTATCTTCCACTCTTCTGTTCTG-AATAACAGC  94

seq1  ATCCAGGATCAGCACACAGAAGACCTTGATAAGTTTAAAAGG-AACTGCA  147
      ||||||||||||||||||||||||  |||||||||||||||| |||||||
seq2  ATCCAGGATCAGCACACAGAAGAC--TGATAAGTTTAAAAGGAAACTGCA  142

seq1  GCCATCGGAGTTTTTGATGTTATCATTTTGGTTGCATTTGTTTTTATTTT  197
      |||||||||| |||||||||||||||||||| |||||||| |||||||||
seq2  GCCATCGGAG-TTTTGATGTTATCATTTTGGGTGCATTTG-TTTTATTTT  190

seq1  CTGGGGTTTTGTGTGTGTGTGTGTGAACCACATGCAATGGCTGACATATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTTTGTGTGTGTGTGTGTGAACCACATGCAATGGCTGACATATC  240

seq1  TGACCATGTTATCCTATAAAAATGATAATCTTGTGATTTACAGCGTGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGTTATCCTATAAAAATGATAATCTTGTGATTTACAGCGTGAAA  290

seq1  AACTTGGGTTGGGAGTGTAGCTCAGGGCTGGATCATTTACTGAGCCTGTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGTTGGGAGTGTAGCTCAGGGCTGGATCATTTACTGAGCCTGTC  340

seq1  TGGAAATCTGGATTCAATCCCAGCACTAAGATAGAAACAGAAACAAAATC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTGGATTCAATCCCAGCACTAAGATAGAAACAGAAACAAAATC  390

seq1  AAACAAACCAGAAATAACCCTTCTTCCTGCTTAACATGTCTGAGGCAGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCAGAAATAACCCTTCTTCCTGCTTAACATGTCTGAGGCAGTT  440

seq1  TGGTGTACTTCCAACATGATTTTCTTCTTACATGCTATCTCTACCATCAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTACTTCCAACATGATTTTCTTCTTACATGCTATCTCTACCATCAC  490

seq1  CCTAGTCCTGAGAAAACCACTTGATTTCTCTTTAGCTCCATTCCTTCGGT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTCCTGAGAAAACCACTTGATTTCTCTTTAGCTCCATTCCTTCGGT  540

seq1  CCTAGAAAGGATGATAATAATACTTCCCTGTAGGGTTTCTAAGACTATTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAAGGATGATAATAATACTTCCCTGTAGGGTTTCTAAGACTATTT  590

seq1  AAATAAGGTGGTGCATGTAGGGCACTTAGAACAACACTAATTTATAGTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGGTGGTGCATGTAGGGCACTTAGAACAACACTAATTTATAGTGT  640

seq1  GCCTCTTGTATGACTAACATATAGTTGTGCCTTTAGTTGTACAAGAATGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTGTATGACTAACATATAGTTGTGCCTTTAGTTGTACAAGAATGT  690

seq1  ATACATAATAACAAAATTCATACATAATTCAGTTCCTAATGGAACTGTGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATAATAACAAAATTCATACATAATTCAGTTCCTAATGGAACTGTGG  740

seq1  GTATGAGCATGCACACTGGGAGTGGAGTTTGCATGCACACATGCACAAAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAGCATGCACACTGGGAGTGGAGTTTGCATGCACACATGCACAAAG  790

seq1  TTAGTTGGTAAATGTGTCTTAAGGTGAACTGAGCGTCTTCTAGAACCCTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGGTAAATGTGTCTTAAGGTGAACTGAGCGTCTTCTAGAACCCTT  840

seq1  GCTCACCTTCCAGTTTAGATGAAATCTCCTTGGACATAACCAGGCATGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTTCCAGTTTAGATGAAATCTCCTTGGACATAACCAGGCATGGT  890

seq1  GGCATACAGGTTGTAATCCTAGCATCTAGGAAGAAGAGGCAGGAAGATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACAGGTTGTAATCCTAGCATCTAGGAAGAAGAGGCAGGAAGATAT  940

seq1  CTGTGAGTTCCAGATCAGCCAAGGGTTGTATAGAAAGACCTTGTTTCAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTTCCAGATCAGCCAAGGGTTGTATAGAAAGACCTTGTTTCAAA  990

seq1  AACAAAGCTGAACATGGTGGTGCTTGGCTTTAATCCCAGCATTTAGGAGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCTGAACATGGTGGTGCTTGGCTTTAATCCCAGCATTTAGGAGG  1040

seq1  CAGAGGCAGGTAGATGTCTTTGAGTTCAAAGTCAGTTGGTTTACAGAGTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGTAGATGTCTTTGAGTTCAAAGTCAGTTGGTTTACAGAGTG  1090

seq1  AATTC  1102
      |||||
seq2  AATTC  1095

seq1: chr15_102524511_102525499
seq2: B6Ng01-314G15.g_73_1081

seq1  CCCAATAACGCAGAAGTAGTGCAGATGTACAGATTTTTGGCAGTTTCCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAACGCAGAAGTAGTGCAGATGTACAGATTTTTGGCAGTTTCCGC  50

seq1  ATCTCCTTGAACTGTCAGGAGTTTGCCCTTTGCTTTAATGCTGTCACTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTTGAACTGTCAGGAGTTTGCCCTTTGCTTTAATGCTGTCACTAT  100

seq1  TCCTACCCCTGATCATTCTTCCTCGTCCACCCCAGGGGTGGCTTCTCGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACCCCTGATCATTCTTCCTCGTCCACCCCAGGGGTGGCTTCTCGCC  150

seq1  ATGTGAAATCCCTCACTCACTTAGCCACTGTTCTTAAAACCCCCTCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAAATCCCTCACTCACTTAGCCACTGTTCTTAAAACCCCCTCTATG  200

seq1  GCTTCAGCTCTCCCAACTTCCAACAGTCCCCTGCTTGCTACTCAAAATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGCTCTCCCAACTTCCAACAGTCCCCTGCTTGCTACTCAAAATCC  250

seq1  AGGCAGTTCTCACAACAATCCAGTTTAGGAGGGAGTTAGAGGGGGAGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTTCTCACAACAATCCAGTTTAGGAGGGAGTTAGAGGGGGAGACG  300

seq1  ACACCCTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAGCCTCCATCCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAGCCTCCATCCTCTT  350

seq1  TCCTCATCCATTTTCTCCGAGGGAGCCGAGTTTGACAGCGAATTCATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCATCCATTTTCTCCGAGGGAGCCGAGTTTGACAGCGAATTCATTCC  400

seq1  GAGCGGGGAGGGTGATTTATTCTTCAAATATACCGACAAGTGCGGGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGGGGAGGGTGATTTATTCTTCAAATATACCGACAAGTGCGGGCATG  450

seq1  ATGGAGCCCATTAAAATGTTGGGAGATTGTTTTTATGATTGAAGTCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGCCCATTAAAATGTTGGGAGATTGTTTTTATGATTGAAGTCTGTA  500

seq1  TTACTCCAACCATAAAGAAAGAGAGCAAGGAGTCATTAGCATTTTCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCCAACCATAAAGAAAGAGAGCAAGGAGTCATTAGCATTTTCATGA  550

seq1  TGGTGTATTTCTGCTTGTCTCCGCGCCATCACTCATCTTTACTGCCCGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTATTTCTGCTTGTCTCCGCGCCATCACTCATCTTTACTGCCCGTC  600

seq1  CCTTTGCTCTCGCTCTGCTACAACGAGGAGAGACTGAAGCCTGAGCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTCTCGCTCTGCTACAACGAGGAGAGACTGAAGCCTGAGCTGGG  650

seq1  GTTGGGGGCTGCGGGAGGCGGGAGCCAGAGATCCCCCCCGACGCTCTGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGGCTGCGGGAGGCGGGAGCCAGAGATCCCCCCCGACGCTCTGCC  700

seq1  CTTCACG-CCAAATCCTCA-CCCTCTCTGGGACGCAGATACA-GGGGTGA  747
      ||||||| ||||||||||| |||||||||||||||||||||| |||||||
seq2  CTTCACGCCCAAATCCTCACCCCTCTCTGGGACGCAGATACAGGGGGTGA  750

seq1  GAGGGACACAGAGGATATGCC-TCCACTTCTTTAGCCAGCTCCTCC-TGC  795
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  GAGGGACACAGAGGATATGCCTTCCACTTCTTTAGCCAGCTCCTCCTTGC  800

seq1  CCCCGCA-CCCCCCCCCCAGGT-GGCAACA-GGATGTCCTGTCCAAATGG  842
      ||||||| |||||||||||||| ||||||| |||||||||||||||||||
seq2  CCCCGCACCCCCCCCCCCAGGTGGGCAACAGGGATGTCCTGTCCAAATGG  850

seq1  -TCTTTGAAGTCCTGGAGGGGCT--GGCCTTGCAGATAGGCCTTCTTTTC  889
       |||||||||||||||| ||| |  ||||||||||||||||||  |||||
seq2  TTCTTTGAAGTCCTGGAAGGGGTTGGGCCTTGCAGATAGGCCTCTTTTTC  900

seq1  T-TTGGC-TCACTCTTTCCTGACCTACACACCCCTTGG-AGCTC--TCCA  934
      | ||||| |||||| ||||||||||||||||||||||| |||||   |||
seq2  TATTGGCTTCACTC-TTCCTGACCTACACACCCCTTGGAAGCTCCTCCCA  949

seq1  G-ATTCATCTCTA--TGGGAGTGAATAT-GGGAGTTC-TTGTCAAAGTGC  979
      | |||||||||||   |||||||||||| |||||||| | ||| ||||||
seq2  GAATTCATCTCTAATGGGGAGTGAATATAGGGAGTTCATGGTCTAAGTGC  999

seq1  CTTGACTTGG  989
      | ||||||||
seq2  CATGACTTGG  1009