BAC Information

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BAC

Clone NameB6Ng01-315B01
Chromosome15 (Build37)
Map Location 79,554,429 - 79,705,447
singlet/doubletdoublet
Overlap geneUnc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748
Upstream geneMfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp, H1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1
Downstream geneApobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981, Tnrc6b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315B01.bB6Ng01-315B01.g
ACCGA105815GA105816
length4391,074
definitionB6Ng01-315B01.b B6Ng01-315B01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,705,003 - 79,705,447)(79,554,429 - 79,555,499)
sequence
ctgatcttcttgcgtctgcctcccaggtgctgagacaacagacatgcacc
cccatgcctggcttggacctgactttttttttttttttcttctttttgac
cataagtgctgcaagaaggtattgtctttcagaactagaattacagacag
ttatgatccaccctgtgggtgctaagaattgaacctgggtcgtctacaag
ccatctctccacccgcatattgagcttgattcttggtagagaaatctgta
ataaatcttccataaggagtaaataaaaattctagcatattcttgagaca
tagtggaccatgcctgttagtcttcccaccctctccacaggtaggactga
aagctaaccttattctgaggacttagtagaagatctttctcttacaccca
ctattctctccattctgatgaaaatcattgagctcctgg
gaattcagtcccttgtatcccccaagagcagctgagttgctctgtgacaa
ccagaaaaaagcacactccaatgatcctgggcatcctttattttttgcat
aggcataaattagagactggagaggtttgtttcgttttgttttgaaagaa
tcaacagtgcagcatttgtgacaggagagcacaaaacaagcccgaggggg
ctgtacaacttgccatttcacccgaacactaaccgggctgccttgcagct
cctcttggccccttccatagagcaggcaggaccaagcccctcaagagcca
ggaactagaaactgggtaacagctggtgcccctcagaatggggctagaaa
tcaagcctgtggctttttcagttaaaaacaaaaacaaaacaacaaaaaac
agaccttgagaattctatatataatacagcagggccagccgttgagtcta
aaagcctcttcctcctctccacacaagttaatgtctccctccctccttcc
ctccctccctccctccctccctctctcccagcccccatctaactgccacc
atagaggccagaaaggaagcagtgtaagcaagagctgagagcccaagaga
gttgctgtagagtagacaggaccactctaaatggggtgggctagtgtagc
ccctctacctgtatcttgagccacactgtggctattggcactgaatcagg
agaacccccaaagtcatctccccactcctctagacaaccctgcagaatag
ccccaaagccagggctgggtcctccctggggggtggaaagcttgctgtgg
ggcacaggcaggatgcagcaggaatggggaaacagaatagaccctcaccc
cacatcaggaaaaaaaagcagtggtcccagcactggggaatctcttaggt
tggcacagaacaacagtcgtcagagcacacagggagctgggttcctccgt
ttgctaggaaccccaggctctacggcccatggtacccctcatgctggaag
aagctcagcagcctcggtgtccttacagcacttgccagggaacagtccaa
gctgcacagtgcttaaggcactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_79705003_79705447
seq2: B6Ng01-315B01.b_46_490 (reverse)

seq1  CCAGGAGCTCAATGATTTTCATCAGAATGGAGAGAATAGTGGGTGTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGCTCAATGATTTTCATCAGAATGGAGAGAATAGTGGGTGTAAGA  50

seq1  GAAAGATCTTCTACTAAGTCCTCAGAATAAGGTTAGCTTTCAGTCCTACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCTTCTACTAAGTCCTCAGAATAAGGTTAGCTTTCAGTCCTACC  100

seq1  TGTGGAGAGGGTGGGAAGACTAACAGGCATGGTCCACTATGTCTCAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAGGGTGGGAAGACTAACAGGCATGGTCCACTATGTCTCAAGAA  150

seq1  TATGCTAGAATTTTTATTTACTCCTTATGGAAGATTTATTACAGATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGAATTTTTATTTACTCCTTATGGAAGATTTATTACAGATTTCT  200

seq1  CTACCAAGAATCAAGCTCAATATGCGGGTGGAGAGATGGCTTGTAGACGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAAGAATCAAGCTCAATATGCGGGTGGAGAGATGGCTTGTAGACGA  250

seq1  CCCAGGTTCAATTCTTAGCACCCACAGGGTGGATCATAACTGTCTGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTTCAATTCTTAGCACCCACAGGGTGGATCATAACTGTCTGTAAT  300

seq1  TCTAGTTCTGAAAGACAATACCTTCTTGCAGCACTTATGGTCAAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTTCTGAAAGACAATACCTTCTTGCAGCACTTATGGTCAAAAAGAA  350

seq1  GAAAAAAAAAAAAAAAGTCAGGTCCAAGCCAGGCATGGGGGTGCATGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAAAAGTCAGGTCCAAGCCAGGCATGGGGGTGCATGTCT  400

seq1  GTTGTCTCAGCACCTGGGAGGCAGACGCAAGAAGATCAGGAATTC  445
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTCAGCACCTGGGAGGCAGACGCAAGAAGATCAGGAATTC  445

seq1: chr15_79554429_79555499
seq2: B6Ng01-315B01.g_66_1139

seq1  GAATTCAGTCCCTTGTATCCCCCAAGAGCAGCTGAGTTGCTCTGTGACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCCTTGTATCCCCCAAGAGCAGCTGAGTTGCTCTGTGACAA  50

seq1  CCAGAAAAAAGCACACTCCAATGATCCTGGGCATCCTTTATTTTTTGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAAAGCACACTCCAATGATCCTGGGCATCCTTTATTTTTTGCAT  100

seq1  AGGCATAAATTAGAGACTGGAGAGGTTTGTTTCGTTTTGTTTTGAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAATTAGAGACTGGAGAGGTTTGTTTCGTTTTGTTTTGAAAGAA  150

seq1  TCAACAGTGCAGCATTTGTGACAGGAGAGCACAAAACAAGCCCGAGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAGTGCAGCATTTGTGACAGGAGAGCACAAAACAAGCCCGAGGGGG  200

seq1  CTGTACAACTTGCCATTTCACCCGAACACTAACCGGGCTGCCTTGCAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAACTTGCCATTTCACCCGAACACTAACCGGGCTGCCTTGCAGCT  250

seq1  CCTCTTGGCCCCTTCCATAGAGCAGGCAGGACCAAGCCCCTCAAGAGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGCCCCTTCCATAGAGCAGGCAGGACCAAGCCCCTCAAGAGCCA  300

seq1  GGAACTAGAAACTGGGTAACAGCTGGTGCCCCTCAGAATGGGGCTAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAGAAACTGGGTAACAGCTGGTGCCCCTCAGAATGGGGCTAGAAA  350

seq1  TCAAGCCTGTGGCTTTTTCAGTTAAAAACAAAAACAAAACAACAAAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTGTGGCTTTTTCAGTTAAAAACAAAAACAAAACAACAAAAAAC  400

seq1  AGACCTTGAGAATTCTATATATAATACAGCAGGGCCAGCCGTTGAGTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGAGAATTCTATATATAATACAGCAGGGCCAGCCGTTGAGTCTA  450

seq1  AAAGCCTCTTCCTCCTCTCCACACAAGTTAATGTCTCCCTCCCTCCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTCTTCCTCCTCTCCACACAAGTTAATGTCTCCCTCCCTCCTTCC  500

seq1  CTCCCTCCCTCCCTCCCTCCCTCTCTCCCAGCCCCCATCTAACTGCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTCCCTCCCTCCCTCCCTCTCTCCCAGCCCCCATCTAACTGCCACC  550

seq1  ATAGAGGCCAGAAAGGAAGCAGTGTAAGCAAGAGCTGAGAGCCCAAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGGCCAGAAAGGAAGCAGTGTAAGCAAGAGCTGAGAGCCCAAGAGA  600

seq1  GTTGCTGTAGAGTAGACAGGACCACTCTAAATGGGGTGGGCTAGTGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTAGAGTAGACAGGACCACTCTAAATGGGGTGGGCTAGTGTAGC  650

seq1  CCCTCTACCTGTATCTTGAGCCACACTGTGGCTATTGGCACTGAATCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTACCTGTATCTTGAGCCACACTGTGGCTATTGGCACTGAATCAGG  700

seq1  AGAACCCCCAAAGTCATCTCCCCACTCCTCTAGACAACCCTGCAGAATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCCCAAAGTCATCTCCCCACTCCTCTAGACAACCCTGCAGAATAG  750

seq1  CCCCAAAGCCAGGGCTGGGTCCTCCCTGGGGGGTGGAAAGCTTGCTGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAAGCCAGGGCTGGGTCCTCCCTGGGGGGTGGAAAGCTTGCTGTGG  800

seq1  GGCACAGGCAGGATGCAGCAGGAAT-GGGAAACAGAATAGACCCTCACCC  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGCACAGGCAGGATGCAGCAGGAATGGGGAAACAGAATAGACCCTCACCC  850

seq1  CACATCAGG-AAAAAAAGCAGTGGTCCCAGCACT-GGGAATCTCTTAGGT  897
      ||||||||| |||||||||||||||||||||||| |||||||||||||||
seq2  CACATCAGGAAAAAAAAGCAGTGGTCCCAGCACTGGGGAATCTCTTAGGT  900

seq1  TGGCACAG-ACAACAGTCGTCAGAGGCACACA-GGAGCTGGTTTCCTCCC  945
      |||||||| ||||||||||||||| ||||||| |||||||| ||||| ||
seq2  TGGCACAGAACAACAGTCGTCAGA-GCACACAGGGAGCTGGGTTCCT-CC  948

seq1  GTTTGCTAGGAACCCCAGGCTCCTACGGGCCATGGTACCCTCCATGCTGG  995
      ||||||||||||||||||||| |||||| |||||||||||  ||||||||
seq2  GTTTGCTAGGAACCCCAGGCT-CTACGGCCCATGGTACCCCTCATGCTGG  997

seq1  AAG-AGCTCAGCAGCCTCGGTGTCCTTTACCAGGCACTTGCCAGGG-ACA  1043
      ||| ||||||||||||||||||||| ||||   ||||||||||||| |||
seq2  AAGAAGCTCAGCAGCCTCGGTGTCC-TTAC--AGCACTTGCCAGGGAACA  1044

seq1  GTCCCAGCTGCACAGTGCT--AAGCACTGT  1071
      |||| ||||||||||||||  | |||||||
seq2  GTCCAAGCTGCACAGTGCTTAAGGCACTGT  1074