BAC Information

Click to search

BAC

Clone NameB6Ng01-315E10
Chromosome15 (Build37)
Map Location 72,203,407 - 72,326,676
singlet/doubletdoublet
Overlap genenone
Upstream gene1700010C24Rik, LOC100040847, Col22a1
Downstream geneKcnk9, 1810044A24Rik, LOC665621, Peg13, LOC100041120, Chrac1, Eif2c2, Ptk2, LOC666053, LOC100040929
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-315E10.bB6Ng01-315E10.g
ACCGA105968GA105969
length6941,108
definitionB6Ng01-315E10.b B6Ng01-315E10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,203,407 - 72,204,100)(72,325,557 - 72,326,676)
sequence
gaattcatcatcttctcttcctctgcccatggctagagttaaacattata
agttgaaatcctggtgcaatgatcagcagacccttctaaggaaagctgtt
cttctaggtaaggcagggtgttcctatcaaatcacaagctaaccacattc
tgctaacacttgagtaaaagcaggtttgcaatgcagccctggcctagaga
tgacggtggaaatgcgccatcatggctcatcagacattcccactgcctac
tcgcctctacttcctagagatgtccttggatcacctgtgttgggacctct
gccatgttctggccaagctcctcatgattttactcgctgtctccctttac
tggaattcagtctcaatgcataaaaatgaaggataagaacagcccaagct
atatactttaagttccatgcaacaaaaccaaaggacatattcagagtagg
cacaagagtgtttgtccttggtagctctgtctcggaagcagagaacatct
attaagcccttcgtacatgagagtaaattcctaaagcatttaaaaaacaa
caaacttgtctctagctgcatatgtatcaaaagatggcctagtcggccat
cactggaaagagaggcccattggacttgcaaactttatatgccccagtac
aagggaacaccagggccaaaaagggggagtgggtgggtagggga

gaattcctagaatccatgtcattcttggcataacagtgagttcaggggta
gagtggatatctcagctcatctctaattccagtcttaaaaaccagaggca
agtgatctcttaggcaagcttcctagctctggatttgattgagagactct
gcctcagtgaacaaggtggaagagggattgaggttgactcttgatatcaa
gtgctagcccctgcacacatgcaaaatgtgtataaaacacacatagatat
aggaaaatggaagaagaatttgaagattgcaaagtagtttggagaacaaa
aataacctgagcacactgttctcaggacaacctgaacatggttcctttct
gagagccaccatgtttgcagtccatgtctgtgtcctgggccattgggatt
gtctaccattcaactttgctacccagccacacctacccttacactccagc
cttagaccaggaagcacatgtatctcttagatactcaaggctcccaaaat
gattttatatactacagaaagggtggatctttgaatattttaagaagcaa
aagcaggctgggcggtggtggcacatgcttttaatcccagcactcgggag
gcagaggcaggcagatttctgagtttgaggccagcctggtctacaaagtg
agttccaggactacagagaaatcctgtctcggaaaaacaaaaacaaaaca
aatcaaacaaacaaacaaacaaaaagaagcaaaagcttgctgaacagtag
tggtgcatgcttttagtttcagcccttggaaggcagaaacaggtagattt
ctgtgatttccaggcagcctggtctacggagtaaattccaggacagccag
ggctacactgagaaaccctatcttgaaaaacaaacaaacaataaacaaac
aagcaaaatttcaagttcaaagtaacactgagtagtcatgttgtgtttga
tattttctattttgtttagaaataacacaggcatcccaatgaatatccat
tacttactcagttttgtttagttactaaaagctcagacttactgtcaaca
caaagtacacataacgccgaaatgcaattccatagtggtaatgttttatt
cgaataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_72203407_72204100
seq2: B6Ng01-315E10.b_48_741

seq1  GAATTCATCATCTTCTCTTCCTCTGCCCATGGCTAGAGTTAAACATTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCATCTTCTCTTCCTCTGCCCATGGCTAGAGTTAAACATTATA  50

seq1  AGTTGAAATCCTGGTGCAATGATCAGCAGACCCTTCTAAGGAAAGCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAAATCCTGGTGCAATGATCAGCAGACCCTTCTAAGGAAAGCTGTT  100

seq1  CTTCTAGGTAAGGCAGGGTGTTCCTATCAAATCACAAGCTAACCACATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGTAAGGCAGGGTGTTCCTATCAAATCACAAGCTAACCACATTC  150

seq1  TGCTAACACTTGAGTAAAAGCAGGTTTGCAATGCAGCCCTGGCCTAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACACTTGAGTAAAAGCAGGTTTGCAATGCAGCCCTGGCCTAGAGA  200

seq1  TGACGGTGGAAATGCGCCATCATGGCTCATCAGACATTCCCACTGCCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGGTGGAAATGCGCCATCATGGCTCATCAGACATTCCCACTGCCTAC  250

seq1  TCGCCTCTACTTCCTAGAGATGTCCTTGGATCACCTGTGTTGGGACCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCTCTACTTCCTAGAGATGTCCTTGGATCACCTGTGTTGGGACCTCT  300

seq1  GCCATGTTCTGGCCAAGCTCCTCATGATTTTACTCGCTGTCTCCCTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGTTCTGGCCAAGCTCCTCATGATTTTACTCGCTGTCTCCCTTTAC  350

seq1  TGGAATTCAGTCTCAATGCATAAAAATGAAGGATAAGAACAGCCCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTCAGTCTCAATGCATAAAAATGAAGGATAAGAACAGCCCAAGCT  400

seq1  ATATACTTTAAGTTCCATGCAACAAAACCAAAGGACATATTCAGAGTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTTAAGTTCCATGCAACAAAACCAAAGGACATATTCAGAGTAGG  450

seq1  CACAAGAGTGTTTGTCCTTGGTAGCTCTGTCTCGGAAGCAGAGAACATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGTGTTTGTCCTTGGTAGCTCTGTCTCGGAAGCAGAGAACATCT  500

seq1  ATTAAGCCCTTCGTACATGAGAGTAAATTCCTAAAGCATTTAAAAAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCCCTTCGTACATGAGAGTAAATTCCTAAAGCATTTAAAAAACAA  550

seq1  CAAACTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCAT  600

seq1  CACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTAC  650

seq1  AAGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGA  694
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAACACCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGA  694


seq1: chr15_72325557_72326676
seq2: B6Ng01-315E10.g_67_1174 (reverse)

seq1  TGTATTCGAATAAAACCATTACAATTATGAAATTGCATTTTTGGCGTTAT  50
      ||||||||||||||| |||||| | |||| ||||||| ||| ||||||||
seq2  TGTATTCGAATAAAA-CATTACCACTATGGAATTGCA-TTTCGGCGTTAT  48

seq1  GTTGTACTTTGTTGGTTTGACAGTAAGTTCTGAGCTTTTTAGGTTACTAA  100
      | ||||||||||    ||||||||||| |||||||||||   || |||||
seq2  G-TGTACTTTGT---GTTGACAGTAAG-TCTGAGCTTTT--AGTAACTAA  91

seq1  ACAAAACTGAGTAAAGTAATGGATATTCATTGGGATGCCTGTGTTATTTC  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACAAAACTGAGT-AAGTAATGGATATTCATTGGGATGCCTGTGTTATTTC  140

seq1  TAAACAAAATAGAAATATTCAAACACAACATGACTTACTCAGTGTTACTT  200
      |||||||||||||||   |||||||||||||||| |||||||||||||||
seq2  TAAACAAAATAGAAAATATCAAACACAACATGAC-TACTCAGTGTTACTT  189

seq1  TGAACTTGAAATTTTGCTTGTTTGTTTATTTGTTTGTTTGTTTTTCAAGA  250
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TGAACTTGAAATTTTGCTTGTTTGTTTA-TTGTTTGTTTGTTTTTCAAGA  238

seq1  TAGGGTTTCTCAGTGTAGCCCTGGCTGTCCTGGAATTTACTCCGTAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTCTCAGTGTAGCCCTGGCTGTCCTGGAATTTACTCCGTAGACC  288

seq1  AGGCTGCCCTGGAAATCACAGAAATCTACCTGTTTCTGCCTTCCAAGGGC  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTG-CCTGGAAATCACAGAAATCTACCTGTTTCTGCCTTCCAAGGGC  337

seq1  TGAAACTAAAAGCATGCACCACTACTGTTCAGCAAGCTTTTGCTTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTAAAAGCATGCACCACTACTGTTCAGCAAGCTTTTGCTTCTTTT  387

seq1  TGTTTGTTTGTTTGTTTG-TTTGTTTTGTTTTTGTTTTTCCGAGACAGGA  449
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGATTTGTTTTGTTTTTGTTTTTCCGAGACAGGA  437

seq1  TTTCTCTGTAGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTGTAGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACT  487

seq1  CAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGCATGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAAGCATGTG  537

seq1  CCACCACCGCCCAGCCTGCTTTTGCTTCTTAAAATATTCAAAGATCCACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCGCCCAGCCTGCTTTTGCTTCTTAAAATATTCAAAGATCCACC  587

seq1  CTTTCTGTAGTATATAAAATCATTTTGGGAGCCTTGAGTATCTAAGAGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTAGTATATAAAATCATTTTGGGAGCCTTGAGTATCTAAGAGAT  637

seq1  ACATGTGCTTCCTGGTCTAAGGCTGGAGTGTAAGGGTAGGTGTGGCTGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGCTTCCTGGTCTAAGGCTGGAGTGTAAGGGTAGGTGTGGCTGGG  687

seq1  TAGCAAAGTTGAATGGTAGACAATCCCAATGGCCCAGGACACAGACATGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGTTGAATGGTAGACAATCCCAATGGCCCAGGACACAGACATGG  737

seq1  ACTGCAAACATGGTGGCTCTCAGAAAGGAACCATGTTCAGGTTGTCCTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAAACATGGTGGCTCTCAGAAAGGAACCATGTTCAGGTTGTCCTGA  787

seq1  GAACAGTGTGCTCAGGTTATTTTTGTTCTCCAAACTACTTTGCAATCTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTGTGCTCAGGTTATTTTTGTTCTCCAAACTACTTTGCAATCTTC  837

seq1  AAATTCTTCTTCCATTTTCCTATATCTATGTGTGTTTTATACACATTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTCTTCCATTTTCCTATATCTATGTGTGTTTTATACACATTTTG  887

seq1  CATGTGTGCAGGGGCTAGCACTTGATATCAAGAGTCAACCTCAATCCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGCAGGGGCTAGCACTTGATATCAAGAGTCAACCTCAATCCCTC  937

seq1  TTCCACCTTGTTCACTGAGGCAGAGTCTCTCAATCAAATCCAGAGCTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTTGTTCACTGAGGCAGAGTCTCTCAATCAAATCCAGAGCTAGG  987

seq1  AAGCTTGCCTAAGAGATCACTTGCCTCTGGTTTTTAAGACTGGAATTAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCCTAAGAGATCACTTGCCTCTGGTTTTTAAGACTGGAATTAGA  1037

seq1  GATGAGCTGAGATATCCACTCTACCCCTGAACTCACTGTTATGCCAAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGCTGAGATATCCACTCTACCCCTGAACTCACTGTTATGCCAAGAA  1087

seq1  TGACATGGATTCTAGGAATTC  1120
      |||||||||||||||||||||
seq2  TGACATGGATTCTAGGAATTC  1108


| Home | SequenceCutter | Blast | Download |