BAC Information

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BAC

Clone NameB6Ng01-316H04
Chromosome15 (Build37)
Map Location 19,649,870 - 19,780,141
singlet/doubletdoublet
Overlap geneLOC100040265
Upstream geneCdh10, EG666857, EG666875, LOC621884
Downstream geneAcot10, LOC100040302
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316H04.bB6Ng01-316H04.g
ACCGA106843GA106844
length1,0931,105
definitionB6Ng01-316H04.b B6Ng01-316H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,779,119 - 19,780,141)(19,649,870 - 19,650,975)
sequence
gaattcaatattttaagaatactatgaaaataaatctgcaatattttggc
attgttttcccataattgcatcaacctcagttttgtgtgcgtttggttgt
ttattgatttggattatttcaataatgaatttacaagaagggatatcagt
acatctatcttctttaattcaaaataggagtgaaattcatattttaaaaa
tttgaacaactctgcataatatttttgtatgagacaagctctcctctaat
aaaaaggccctggaggggaagttcagcttgctcagataaaggacatagca
ctgtcagtaaataatatataatatatataatatataatgctgtgggtaat
ctctctttataggattcatctcatcatcttttaaaattttttgtttatta
tatatatatatatacacaatatatattttgaacatatatttgttcataat
ataaattttccatatatgtttgagttattagtacttttttggaaggctaa
cacactttccactttccttaggaaaatcaagatcatcaattttgaccata
acctggcactatgaatcgttctttactcattcctagcttgtagagaattt
tttttttcattttttattaggtatttagctcatttacatttccaatgcta
taccaaaagtcccccatacccacccaccccaactcccctacccgcccact
ccccctttttggccctggcgttcccctgttctggggcatataaagtttgc
gtgtccaatgggcctctctttccagtgatggccaactaggccatcttttg
atatatatgcagctagagccaagagctccggggtactggttagttcataa
tgttgatccacctatagggttgcagatcccttttagctccttggggtact
ttcttctagctcctccattgggagccctgtgaatccatccattagctgac
tgtgagcatccactttctggtgtttgctagaacccggcatagtcctcaca
agaagacagctacattctggttcctttcgaataaaattcttgctaagtat
atggcatgtgtcagcgtttgattgcttgaattatgaggttgat

gaattcttcccactgtgtgtccttatgaaataattgcgccacatggcaca
cacatggttcctattcagactgttatttttgttccttgagcaacacaaat
gcacctgttcgctacacaattaggcatgaccatattgaaggtaatcacaa
caaataatgaaaaatggttttggtttgatttggaaaataagccataatgt
ctactcaggcattgagaaagctttgataatggaattaacatatttaatga
aaattgattctgtttatgtacggaggtaatggatatgcttgcataaattc
tgggcactcactctgaaatattaattattattttgtaatttacccaagac
aattccagccaaaggtagcatctgtttggcaccaaaattctactttggtt
taattgtccagtgcaagagaaataggtacaaagagtcaggtaagtcaggc
aaggtcacaaagacgacatttcactttgattcgatatacaaaaatatgtt
ccatatcaggtactcaaatagaagatttttctagataaataaattttcgt
tcacatattacatggacaaaaaagtgggagactcaataaagattagtgat
cagaatggtttttaattaaaattctttccctttaaatttacttcaggata
aattcataatttatatgtcaatagatttttttatacaatgtcattgtatc
tcaatcattatcttattcctatcactcaggaaaaaatgtactttgaaaga
tgtgctgtcaaattcaaaaaaactccttgaattaatatttatatacttta
gttaatacttacatatctgtacatgtggctcaaatacaaagtaatgtctt
gagaggcctggaaagaagaatggtcattgaataaatgtgcttttctgtga
gcatgttgatgcttgttttatccctagaaatcataaaaaagtgtaaagag
agaccaaactccataaattatcttctcagtttttgtattccttggcattc
aaatgcatgtgtgttcatgcacgcatgctgtgcacgtgtgcatgtacaca
cacacacacacacatcacgtcacacacgcacacacacacacatacaacaa
tactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr15_19779119_19780141
seq2: B6Ng01-316H04.b_102_1137 (reverse)

seq1  ATCCACCTCATAAT--CAGCATCCAAACGCTGACACCATTGCATATAC-T  47
      ||| ||||||||||   ||||  |||||||||||| |||  ||||||| |
seq2  ATCAACCTCATAATTCAAGCAATCAAACGCTGACA-CATGCCATATACTT  49

seq1  AGCAAG-ATTTTA-TCGAAAGGACCCAG-ATGTAGCTGTC-TCTTGTGA-  92
      |||||| |||||| ||||||||| |||| ||||||||||| |||||||| 
seq2  AGCAAGAATTTTATTCGAAAGGAACCAGAATGTAGCTGTCTTCTTGTGAG  99

seq1  GACTATGCCGGGTCCTAGCAAACA-CAG-AAGTGGATGCTCACAGTCAGC  140
      ||||||||||||| |||||||||| ||| |||||||||||||||||||||
seq2  GACTATGCCGGGTTCTAGCAAACACCAGAAAGTGGATGCTCACAGTCAGC  149

seq1  TAATGGATGGA-TCACAGGGCTCCCAATGGAGGAGCTAG-AGAAAGTA-C  187
      ||||||||||| ||||||||||||||||||||||||||| |||||||| |
seq2  TAATGGATGGATTCACAGGGCTCCCAATGGAGGAGCTAGAAGAAAGTACC  199

seq1  CCAAGGAGCT-AAAGGGATCTGCAACCCTATAGGTGGATCAACATTATGA  236
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGAGCTAAAAGGGATCTGCAACCCTATAGGTGGATCAACATTATGA  249

seq1  ACTAACCAGTACCCCGGAGCTCTTGGCTCTAGCTGCATATATATCAAAAG  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACCAGTACCCCGGAGCTCTTGGCTCTAGCTGCATATATATCAAAAG  299

seq1  ATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAAC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTAGTTGGCCATCACTGGAAAGAGAGGCCCATTGGACACGCAAAC  349

seq1  TTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGG  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAGAACAGGGGAACGCCAGGGCCAAAAAGGGGGAGTGGG  399

seq1  CGGGTAGGGGAGTTGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCAT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTAGGGGAGTTGGGGTGGGTGGGTATGGGGGACTTTTGGTATAGCAT  449

seq1  TGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGAAAAAAAAAATTC  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATGTAAATGAGCTAAATACCTAATAAAAAATGAAAAAAAAAATTC  499

seq1  TCTACAAGCTAGGAATGAGTAAAGAACGATTCATAGTGCCAGGTTATGGT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGCTAGGAATGAGTAAAGAACGATTCATAGTGCCAGGTTATGGT  549

seq1  CAAAATTGATGATCTTGATTTTCCTAAGGAAAGTGGAAAGTGTGTTAGCC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGATGATCTTGATTTTCCTAAGGAAAGTGGAAAGTGTGTTAGCC  599

seq1  TTCCAAAAAAGTACTAATAACTCAAACATATATGGAAAATTTATATTATG  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAAAGTACTAATAACTCAAACATATATGGAAAATTTATATTATG  649

seq1  AACAAATATATGTTCAAAATATATATTGTGTATATATATATATATAATAA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATATGTTCAAAATATATATTGTGTATATATATATATATAATAA  699

seq1  ACAAAAAATTTTAAAAGATGATGAGATGAATCCTATAAAGAGAGATTACC  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAATTTTAAAAGATGATGAGATGAATCCTATAAAGAGAGATTACC  749

seq1  CACAGCATTATATATTATATATATTATATATTATTTACTGACAGTGCTAT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCATTATATATTATATATATTATATATTATTTACTGACAGTGCTAT  799

seq1  GTCCTTTATCTGAGCAAGCTGAACTTCCCCTCCAGGGCCTTTTTATTAGA  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTATCTGAGCAAGCTGAACTTCCCCTCCAGGGCCTTTTTATTAGA  849

seq1  GGAGAGCTTGTCTCATACAAAAATATTATGCAGAGTTGTTCAAATTTTTA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCTTGTCTCATACAAAAATATTATGCAGAGTTGTTCAAATTTTTA  899

seq1  AAATATGAATTTCACTCCTATTTTGAATTAAAGAAGATAGATGTACTGAT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGAATTTCACTCCTATTTTGAATTAAAGAAGATAGATGTACTGAT  949

seq1  ATCCCTTCTTGTAAATTCATTATTGAAATAATCCAAATCAATAAACAACC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTTCTTGTAAATTCATTATTGAAATAATCCAAATCAATAAACAACC  999

seq1  AAACGCACACAAAACTGAGGTTGATGCAATTATGGGA  1023
      |||||||||||||||||||||||||||||||||||||
seq2  AAACGCACACAAAACTGAGGTTGATGCAATTATGGGA  1036


seq1: chr15_19649870_19650975
seq2: B6Ng01-316H04.g_64_1168

seq1  GAATTCTTCCCACTGTGTGTCCTTATGAAATAATTGCGCCACATGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCCCACTGTGTGTCCTTATGAAATAATTGCGCCACATGGCACA  50

seq1  CACATGGTTCCTATTCAGACTGTTATTTTTGTTCCTTGAGCAACACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTTCCTATTCAGACTGTTATTTTTGTTCCTTGAGCAACACAAAT  100

seq1  GCACCTGTTCGCTACACAATTAGGCATGACCATATTGAAGGTAATCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTGTTCGCTACACAATTAGGCATGACCATATTGAAGGTAATCACAA  150

seq1  CAAATAATGAAAAATGGTTTTGGTTTGATTTGGAAAATAAGCCATAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATGAAAAATGGTTTTGGTTTGATTTGGAAAATAAGCCATAATGT  200

seq1  CTACTCAGGCATTGAGAAAGCTTTGATAATGGAATTAACATATTTAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCAGGCATTGAGAAAGCTTTGATAATGGAATTAACATATTTAATGA  250

seq1  AAATTGATTCTGTTTATGTACGGAGGTAATGGATATGCTTGCATAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTCTGTTTATGTACGGAGGTAATGGATATGCTTGCATAAATTC  300

seq1  TGGGCACTCACTCTGAAATATTAATTATTATTTTGTAATTTACCCAAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACTCACTCTGAAATATTAATTATTATTTTGTAATTTACCCAAGAC  350

seq1  AATTCCAGCCAAAGGTAGCATCTGTTTGGCACCAAAATTCTACTTTGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGCCAAAGGTAGCATCTGTTTGGCACCAAAATTCTACTTTGGTT  400

seq1  TAATTGTCCAGTGCAAGAGAAATAGGTACAAAGAGTCAGGTAAGTCAGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCCAGTGCAAGAGAAATAGGTACAAAGAGTCAGGTAAGTCAGGC  450

seq1  AAGGTCACAAAGACGACATTTCACTTTGATTCGATATACAAAAATATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACAAAGACGACATTTCACTTTGATTCGATATACAAAAATATGTT  500

seq1  CCATATCAGGTACTCAAATAGAAGATTTTTCTAGATAAATAAATTTTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCAGGTACTCAAATAGAAGATTTTTCTAGATAAATAAATTTTCGT  550

seq1  TCACATATTACATGGACAAAAAAGTGGGAGACTCAATAAAGATTAGTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATTACATGGACAAAAAAGTGGGAGACTCAATAAAGATTAGTGAT  600

seq1  CAGAATGGTTTTTAATTAAAATTCTTTCCCTTTAAATTTACTTCAGGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGGTTTTTAATTAAAATTCTTTCCCTTTAAATTTACTTCAGGATA  650

seq1  AATTCATAATTTATATGTCAATAGATTTTTTTATACAATGTCATTGTATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATAATTTATATGTCAATAGATTTTTTTATACAATGTCATTGTATC  700

seq1  TCAATCATTATCTTATTCCTATCACTCAGGAAAAAATGTACTTTGAAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATTATCTTATTCCTATCACTCAGGAAAAAATGTACTTTGAAAGA  750

seq1  TGTGCTGTCAAATTCAAAAAAACTCCTTGAATTAATATTTATATACTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGTCAAATTCAAAAAAACTCCTTGAATTAATATTTATATACTTTA  800

seq1  GTTAATACTTACATATCTGTACATGTGGCTCAAATACAAAGTAATGTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATACTTACATATCTGTACATGTGGCTCAAATACAAAGTAATGTCTT  850

seq1  GAGAGGCCTGG-AAGAAGAATGGTCATTGAATAAATGTGCTTTTCTGTGA  899
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCTGGAAAGAAGAATGGTCATTGAATAAATGTGCTTTTCTGTGA  900

seq1  GCATGTTGATGCTTGTTTTATCCCTAGAAATCATAAAAAAGTGTAAGGAG  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCATGTTGATGCTTGTTTTATCCCTAGAAATCATAAAAAAGTGTAAAGAG  950

seq1  AGACCAAACTCCATAAAATTATCTTCTCAG-TTTTGTATTCCTTGGCATT  998
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  AGACCAAACTCCAT-AAATTATCTTCTCAGTTTTTGTATTCCTTGGCATT  999

seq1  CAAATGCATGTGTGTTCATGCACGCATGCCTGTGCACGTGTGCATGTACA  1048
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAAATGCATGTGTGTTCATGCACGCATG-CTGTGCACGTGTGCATGTACA  1048

seq1  CACACACACACACACA-CACACTCACACACGCACACACACACACATACAA  1097
      |||||||||||||||| |||  |||||||||||||||||||||||||| |
seq2  CACACACACACACACATCAC-GTCACACACGCACACACACACACATAC-A  1096

seq1  ACAATACTG  1106
      |||||||||
seq2  ACAATACTG  1105


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